@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu19820: (2016-07-02 )
MEPYQRYEELKKKTIKVVQKENYSIRYITQDEASNDLDEFYKQFAQHLLEAALERKAE
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......----..10..------...---...-20...---....-.30..-..-....40...--....---.50.......----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
P
Y
Q
R
Y
----
E
E
L
K
K
K
------
T
I
K
---
V
VQ-KEN
Y
S
---
I
R
Y
I
-TQDEA-SN-
D
L
D
E
F
Y
K
Q
F
--
A
Q
H
L
---
L
E
A
A
L
E
RKAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
75.17
25%
6
- C5 -
5CXI
1
?
A:
[18-198]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
E
R
R
----
K
R
I
L
D
A
------
T
M
A
---
I
A
S
-
K
G
G
Y
E
AVQ
M
R
A
V
-
A
D
R
-
A
-
D
V
-
A
V
G
T
L
Y
R
Y
F
PS
K
V
H
L
---
L
V
S
A
L
G
R
E
F
S
R
I
D
A
KTDRSAAGAT
P
F
Q
R
L
N
F
M
V
G
K
L
N
R
A
M
Q
R
N
P
L
L
T
E
A
M
T
R
A
Y
V
F
ADASA
A
S
E
V
D
Q
V
E
K
L
I
D
S
M
F
A
R
A
M
A
NGEPT
E
D
Q
Y
H
I
A
R
V
I
S
D
V
W
L
S
N
L
L
A
W
L
T
RRAS
A
T
D
V
S
K
R
L
D
L
A
V
R
L
L
IG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.20
27%
-101
- C5 -
2WOY
2
A:
[104-147]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
Q
Y
D
S
L
----
E
A
A
P
K
K
------
V
Q
D
---
L
L
K
-
K
A
N
I
T
---
V
K
G
A
-
F
Q
L
F
S
-
A
D
-
N
P
E
E
F
Y
K
Q
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.27
27%
-85
- C5 -
2WZA
1
A:
[122-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
Q
Y
D
S
L
----
E
A
A
P
K
K
------
V
Q
D
---
L
L
K
-
K
A
N
I
T
---
V
K
G
A
-
F
Q
L
F
S
-
A
D
-
N
P
E
E
F
Y
K
Q
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.34
27%
-85
- C5 -
2WQS
2
A:
[104-147]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
Q
Q
Y
D
S
L
----
E
A
A
P
K
K
------
V
Q
D
---
L
L
K
-
K
A
N
I
T
---
V
K
G
A
-
F
Q
L
F
S
-
A
D
-
N
P
E
E
F
Y
K
Q
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
55.72
16%
-87
* C5 *
1H3O
-
TAF4_HUMAN
A:
[870-917]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
L
Q
----
A
P
L
Q
R
R
------
I
L
E
---
I
G
K
-
K
H
G
I
-----------
T
E
L
-
H
P
-
D
V
V
S
Y
V
S
H
A
--
T
Q
Q
R
---
L
Q
N
L
V
E
K
I
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.27
19%
151
- C5 -
4ZFV
4
?
A:
[10-445]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
V
L
D
F
T
V
L
G
L
N
S
G
TSMD
G
I
D
C
A
L
C
H
F
Y
Q
KTPDA
P
M
E
F
E
LL
E
Y
G
E
V
P
L
A
------
Q
P
I
K
Q
R
------
V
M
R
---
M
I
L
-
E
D
T
T
S
--------------
P
S
-
E
L
S
E
V
N
V
I
L
--
G
E
H
F
---
A
D
A
V
R
Q
F
A
A
E
R
NVDLSTID
A
I
A
S
HGQTIWLLSMPEEGQVK
S
A
L
T
M
A
E
G
A
I
L
A
S
R
T
G
I
T
S
I
T
D
F
R
I
S
D
Q
A
A
GRQGAPLI
A
F
F
D
A
L
L
LHHPT
K
L
R
A
C
Q
N
I
G
G
I
A
N
V
C
F
I
P
P
DVDGRRTDE
Y
Y
D
F
D
TGPGN
V
F
I
D
A
V
V
R
H
F
T
N
GEQEYDKDG
A
M
G
K
R
G
K
V
D
Q
E
L
V
D
D
F
L
KMPYFQLDPPKTTGREVFRD
T
L
A
H
D
L
I
R
R
A
E
A
K
GLS
P
D
D
I
V
A
T
T
T
R
I
T
A
Q
A
I
V
D
H
Y
R
R
YAPSQEID
E
I
F
M
C
G
GGAYN
P
N
I
V
E
F
I
Q
Q
S
Y
P
N
T
K
I
M
M
LDEAGVPAGA
K
E
A
I
T
F
A
W
Q
G
M
E
A
L
V
GRSI
P
V
P
T
RVETRQHYV
L
G
K
V
S
P
G
LN
Y
R
S
V
M
K
K
G
M
A
FGGDAQQLPWVS
E
M
I
V
K
K
KG
K
V
I
T
NNWAGSHHHH
21
Fugue
53.80
16%
127
- C5 -
4HLB
1
?
A:
[21-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSDRF
T
A
F
E
E
E
L
L
A
R
Y
----
A
D
K
G
I
R
------
S
V
D
---
V
A
A
Y
A
K
G
I
D
---
I
V
F
V
-
A
A
D
R
K
M
T
----
R
A
E
F
S
A
I
--
A
S
R
S
---
I
R
E
L
K
E
R
F
G
F
DKD
V
P
I
G
A
V
L
D
Y
K
KDAA
T
D
T
R
T
RFVLKLR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
51.62
14%
-234
- C5 -
1TVI
-
YBEY_THEMA
A:
[1-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
---
I
R
I
L
-
G
E
G
K
G
-
S
K
-
L
L
E
N
L
K
E
K
L
--
E
E
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
50.44
25%
86
- C5 -
2KPO
-
?
A:
[1-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
L
Y
V
L
I
I
S
ND
K
K
L
I
E
E
------
A
R
K
---
M
A
E
-
K
A
N
L
E
---
L
R
T
V
K
T
E
D
E
L
-
K
K
-
Y
L
E
E
F
R
K
E
S
--
Q
N
I
K
---
V
L
I
L
V
S
N
D
E
E
L
D
K
A
K
E
L
A
Q
K
M
E
I
D
V
R
T
R
K
V
TS
P
D
E
A
K
R
W
I
K
E
F
S
E
E
GGSLEHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.86
29%
61
- C5 -
1SK7
1
?
A:
[24-67]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
H
Q
R
L
----
E
S
L
V
K
S
------
K
E
P
---
F
A
S
-
R
D
N
F
A
---
R
F
V
A
-
A
Q
Y
L
F
-
Q
H
-
D
L
E
P
L
Y
R
N
E
--
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
41.50
22%
-126
- C2 -
4S04
-
?
A:
[198-219]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
----
E
K
I
G
K
S
------
R
I
R
---
T
V
R
-
G
F
G
Y
M
---
L
A
N
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.30
33%
-42
- C5 -
2M4G
-
?
A:
[23-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
E
E
Y
----
D
E
F
K
K
R
------
R
E
S
-----
R
-
G
G
K
Y
S
---
I
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
40.90
19%
-218
- C5 -
1OKS
1
A:
[21-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
Y
L
---
M
T
L
L
-
D
D
I
K
G
-
A
N
-
D
L
A
K
F
H
Q
M
L
--
V
K
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
35.64
36%
122
- C- -
2W6A
-
GIT1_RAT
A:
[430-460]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
L
Q
E
Y
----
L
E
L
K
K
A
L
A
T
S
E
A
K
V
Q
---
Q
L
M
-
K
V
N
S
S
---
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
34.62
13%
76
- C5 -
3R1K
2
EIS_MYCTU
A:
[29-428]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
T
L
C
S
P
T
EDD
W
P
G
M
F
L
L
A
A
A
S
F
T
DFIG
P
E
S
A
T
A
W
R
T
L
VPTDG
A
V
V
V
R
DGSEVV
G
M
A
L
Y
M
D
L
R
L
T
V
P
GEVVLP
T
A
G
L
SF
V
A
V
A
PTHRRRG
L
L
R
A
M
C
A
E
L
H
R
R
I
A
D
S
GYP
V
A
A
L
H
A
SEGGIYGRFGYGPA
T
T
L
H
E
L
T
V
D
R
R
F
A
R
F
H
----
A
D
A
P
G
G
------
G
---------
L
G
G
S
S
---
V
R
L
V
-
R
P
T
E
H
-
R
G
-
E
F
E
A
I
Y
E
R
W
--
R
Q
Q
V
---
P
-
G
G
L
L
R
P
Q
V
L
W
D
E
L
L
A
E
CKAAPGGD
R
E
S
F
A
L
L
H
PD
G
Y
A
L
Y
R
V
DRTDLK
L
A
R
V
S
E
L
R
A
VT
A
D
A
H
C
A
L
W
R
A
L
I
G
LDSME
R
I
S
I
ITHPQDPLPHLLTDTRLARTT
W
R
Q
D
G
L
W
L
R
IMN
V
P
A
A
L
E
A
RGYAHEV
G
E
F
S
T
V
L
E
V
SDGGRFA
L
K
I
G
DG
R
A
R
C
T
P
T
DAAAE
I
E
M
D
R
D
V
L
G
S
L
YLGAHR
A
S
T
L
A
A
A
NRLRTKD
S
Q
L
L
R
R
L
D
A
A
F
ASDV
P
V
Q
T
A
F
EF-------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
27.67
20%
73
- C5 -
4DN7
3
?
A:
[24-428]
Q
T
E
Q
V
S
L
K
K
R
A
E
S
A
A
EKKAAFGEDFELEKYEEGSKVSKPIEDLQSLD
E
E
S
K
K
T
L
L
Q
V
GVIPSEEGRS
G
S
F
L
V
L
DNAVS
H
S
T
L
KDKN
V
E
L
M
S
T
H
K
A
M
E
K
Y
EWLKDYSWKLVQVDAD
K
Y
T
A
K
T
Y
L
E
D
A
D
G
Y
F
I
R
V
P
A
GKKTS
M
P
V
Q
T
C
L
M
L
G
S
K
K
A
A
Q
T
V
H
N
I
I
I
V
E
EG
A
T
L
D
I
I
T
G
C
T
T
K
KGVE
E
G
L
H
L
G
I
S
E
M
Y
I
K
KG
G
T
L
N
F
T
M
I
H
N
W
A
EQ
I
G
V
R
P
R
T
V
V
S
V
E
E
G
G
T
Y
V
S
N
Y
I
C
L
K
PVR
S
V
Q
T
Y
P
T
V
R
LEGEG
A
V
T
R
L
N
T
I
A
I
A
H
PGSELD
L
G
S
K
A
I
F
NAPG
T
R
A
E
L
I
S
R
T
I
T
IG
G
R
L
I
A
R
G
E
M
I
G
NAKG
A
K
G
H
L
E
C
K
G
L
V
LTD
K
G
S
Q
L
A
I
P
I
L
E
A
N
V
D
D
----
I
E
L
T
H
E
------
A
A
V
G
K
I
A
K
D
-
Q
V
E
Y
L
M
--
A
R
G
L
-
T
E
D
E
A
-
V
G
M
I
I
R
G
F
L
D
V
G
--
I
R
G
I
PEE
L
K
E
E
I
E
N
T
I
A
Q
T
A
L
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
26.62
33%
126
- C5 -
2DT7
-
SF3A3_HUMAN
A:
[77-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
P
N
-
E
F
A
E
F
Y
N
R
L
--
K
Q
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.48
33%
-
- C5 -
4JDX
-
FRP_SYNY3
A:
[14-28]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
Q
S
--
A
H
A
L
---
F
R
K
A
Y
Q
R
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
26.43
21%
26
- C5 -
1U5T
-
VPS36_YEAST
B:
[402-420]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-
N
K
E
L
F
L
D
E
I
--
A
R
E
I
---
Y
E
F
T
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
26.33
12%
158
- C4 -
3LVG
-
CLCB_BOVIN
D:
[-103]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QADRLTQE
P
E
S
I
R
K
W
----
R
E
E
Q
R
K
------
R
L
Q
---
E
L
D
-
A
A
S
K
V
---
M
E
Q
E
-
W
R
E
K
A
-
K
K
-
D
L
E
E
W
N
Q
R
Q
--
S
E
Q
V
---
E
K
N
K
I
N
N
R
I
A
DKAFYQQPDADII---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------