@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20260: (2016-07-02 )
MERFIKRLSASCESTIHHKVYQIMNEAKTEFEKVLKKLK
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-.--.......20........30-........----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
F
I
K
R
L
S
A
-
S
-
C
--
E
S
T
I
H
H
K
V
Y
Q
I
M
N
E
A
K
T
E
F
-
E
K
V
L
K
KLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
74.76
57%
-
- C2 -
4TQL
-
?
A:
[108-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
K
L
K
Q
I
M
Q
E
A
K
Q
K
M
-
E
K
L
L
K
Q
L
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
69.50
27%
33
- C2 -
4D2I
2
HERA_SULSO
A:
[1-476]
MII
G
Y
V
I
G
QATTQ
E
A
L
I
L
A
E
R
P
V
R
L
G
T
Y
V
V
L
E
Y
DNVK
A
L
G
L
I
T
N
V
T
R
G
S
PLLDDNMND
I
E
I
V
Q
R
L
K
Q
F
NNS
I
P
V
Y
T
K
A
K
V
K
L
L
CDMNNHFLMPD
I
P
P
F
AGT
P
A
R
E
A
E
D
E
E
L
K
S
I
YSQDGQIRIGSLIGKN
V
E
V
K
L
N
INSFAR
H
L
A
I
L
A
A
TGSG
K
S
N
T
V
A
V
L
S
Q
R
I
S
E
L
G
G
S
V
L
I
FDYHGEYYDSDIKN
L
N
R
I
E
PKLNPLYMT
P
R
E
F
S
T
L
L
EIRENA
I
I
Q
Y
R
I
L
R
R
A
F
I
K
V
T
N
G
I
R
A
A
L
A
A
-
G
-
Q
IP
F
S
T
L
N
S
Q
F
Y
E
L
M
A
D
A
L
K
---
D
E
V
L
N
K
F
E
E
F
M
D
R
Y
SNVIDLTSSDIIEKVKRGKV
N
V
V
S
LTQLD
E
D
S
M
D
A
V
V
S
H
Y
L
R
R
I
L
D
S
R
K
D
F
K
R
SKNSGLK
F
P
I
I
A
V
I
E
E
A
H
V
F
L
SKNENT
L
T
K
Y
W
A
S
R
I
A
R
EGRKFG
V
G
L
T
I
V
S
QRPKGLD
E
N
I
L
S
Q
MTNKIILKIIE
P
T
D
K
K
Y
I
L
E
S
S
DNLS
E
D
L
A
E
Q
L
SSLDVG
E
A
I
I
I
G
KIVKLPAVVKIDMFE
G
K
L
L
G
SDPDMIG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
64.16
33%
-284
- C2 -
2EBB
-
?
A:
[42-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
V
R
R
I
A
A
-
I
-
S
--
E
N
A
N
H
H
P
F
I
S
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
59.52
17%
-41
- C2 -
4UM2
1
EST1A_HUMAN
A:
[1-582]
---------------------------------------------------------------------------------------------------------------------------------------------------------S
M
E
L
H
R
L
L
R
V
A
D
N
Q
E
L
Q
L
S
N
L
L
S
RDRIS
P
E
G
L
E
K
M
A
Q
L
R
A
E
L
L
Q
L
Y
E
R
C
I
L
L
D
I
E
F
S
D
N
Q
N
V
D
Q
I
L
W
K
N
AF
Y
Q
V
I
E
K
F
R
Q
L
V
K
D
P
N
V
-
E
-
N
--
P
E
Q
I
R
N
R
L
L
E
L
L
D
E
G
S
D
F
F
-
D
S
L
L
Q
K
L
Q
V
T
Y
KFKLEDYMDGLAIRLR
K
T
V
K
Y
A
L
I
S
A
Q
R
C
M
I
C
Q
G
D
I
A
R
Y
R
E
Q
A
S
DTANY
G
K
A
R
S
W
Y
L
K
A
Q
H
I
APKNG
R
P
Y
N
Q
L
A
L
L
A
V
Y
T
RR
K
L
D
A
V
Y
Y
Y
M
R
S
L
A
ASNPI
L
T
A
K
E
S
L
M
S
L
F
E
E
T
K
R
K
A
E
Q
M
EKGLGSLS
P
S
D
L
N
K
R
F
I
L
S
F
L
H
A
H
G
K
L
F
TRIGMET
F
P
A
V
A
E
K
V
L
K
E
F
Q
V
L
L
Q
HSPSPIG
S
T
R
M
L
Q
L
M
T
I
N
M
F
A
V
H
N
SQRS
V
I
Q
E
Q
A
A
A
L
G
L
A
M
F
S
L
L
V
R
R
C
T
C
L
L
K
E
SLSSPEDQDDQDDIKVSSFV
P
D
L
K
E
L
L
P
S
V
K
V
W
S
D
W
M
L
G
Y
PDTWNPPPTSLDLPSHVAVD
V
W
S
T
L
A
D
F
C
N
I
L
T
A
VNQSE
V
P
L
Y
KDPDDD
L
T
L
L
I
L
E
E
D
R
L
L
SGFVPLLAAPQ
D
P
C
Y
V
E
KTSD
K
V
I
A
A
D
C
K
R
V
T
V
L
K
Y
F
L
E
A
L
C
G
QEEPLLAFKGG
K
Y
V
S
VAPV
29
Fugue
58.48
28%
18
- C2 -
4XGC
-
?
C:
[1-676]
--------------------------------------------------MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
LTGINQPDH
L
S
Q
F
T
A
L
T
Q
R
L
H
A
Q
RA
A
M
V
C
V
L
Q
SRDCAT
L
K
A
A
V
E
T
L
V
F
G
L
V
E
D
N
A
E
V
E
QLRRSQCT
M
K
Q
L
K
S
W
Y
T
N
N
FDSEQ
K
R
R
Q
L
V
V
I
L
PDFECFN
A
S
V
L
Q
D
L
I
L
I
L
S
A
H
CGSLP
F
V
L
V
L
GVATA
M
T
A
V
H
G
T
L
P
Y
-
H
-
V
--
S
S
K
I
R
L
R
V
F
Q
T
Q
A
-
A
P
T
G
L
-
N
E
V
L
D
K
V
L
LSPKYA
F
H
L
S
G
K
T
F
K
F
L
T
H
I
F
L
Y
YDFS
I
H
G
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
GGNAFALCTD
Y
S
K
A
L
G
R
I
K
Q
LT
H
E
D
M
E
T
I
R
R
LPS
F
R
P
Y
V
E
Q
IND
C
K
R
I
I
A
V
L
TD
D
D
Y
L
K
K
K
L
P
Q
L
L
R
D
C
L
L
H
F
L
L
F
R
C
S
L
E
F
L
T
E
L
V
G
D
LPRCPLGKL
R
R
E
L
Y
V
N
C
L
N
RAIIST
P
E
Y
K
E
C
L
Q
M
L
S
F
LSK
D
E
F
V
A
K
V
N
R
A
L
E
R
T
E
Q
F
L
V
E
EIAPLEL
G
E
A
C
T
A
V
L
R
P
K
L
E
A
I
R
L
A
V
D
E
VG
R
A
L
Q
K
T
L
Q
L
I
E
T
Q
IVQDHLRALQDAPPIHELFVFSD
I
A
T
V
R
R
N
I
I
GAP
R
A
A
L
H
T
A
L
N
NPHFP
D
L
S
V
V
Y
K
L
H
L
E
C
GRMIN
L
F
D
W
L
Q
A
F
R
S
V
VP
Q
I
Q
A
R
F
T
R
A
V
A
E
L
Q
F
L
GYIKMSKRKTD
H
A
T
R
LTW---------------------------------------------
16
HHSearch
51.17
16%
-418
- C2 -
1NQ6
-
?
A:
[106-130]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
H
I
T
Q
V
M
T
-
H
-
Y
--
K
G
K
--
I
H
S
W
D
V
V
N
E
A
F
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
51.11
15%
42
- C2 -
2Q9R
10
?
A:
[5-199]
------------------------------------------------------------------------------------------KTG
F
F
K
R
L
K
A
LT
L
P
Q
K
Q
L
F
A
T
A
L
C
Q
R
M
L
P
N
Y
Q
L
F
S
E
V
C
EFGD
P
A
V
L
S
T
A
L
E
L
L
W
Q
S
L
Y
D
P
KLKFN
I
D
V
H
L
Q
R
L
E
D
N
TPEPADFEAYG
V
Y
P
A
M
D
A
V
V
A
I
S
T
L
L
G
A
I
Q
G
KI
E
E
D
I
V
N
I
S
K
L
S
S
S
T
V
A
N
Y
I
E
A
I
SDVDLVD
E
A
L
D
D
F
V
F
A
H
E
V
M
E
-
E
--
E
K
E
L
Q
N
S
L
L
E
I
I
E
E
N
P
K
I
T
-
A
E
L
V
K
G
L
R
K
D
I
I
E
T
GVSNIGISV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
50.87
33%
-473
- C2 -
3HDO
1
HIS8_GEOMG
A:
[341-353]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
Q
T
L
A
A
L
K
E
-
I
-
G
--
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
48.60
25%
-316
- C2 -
5AWW
-
SECE_THET8
E:
[4-19]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
I
R
Y
F
Q
E
A
R
A
E
L
-
A
R
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
47.85
19%
-124
- C2 -
3FWC
1
SAC3_YEAST
B:
[41-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
T
M
T
R
-
E
L
Y
--
D
A
F
L
H
E
R
L
Y
L
I
Y
M
D
S
R
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
46.60
22%
58
- C2 -
3FWB
-
SAC3_YEAST
B:
[760-787]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
D
T
M
T
R
-
E
L
Y
--
D
A
F
L
H
E
R
L
Y
L
I
Y
M
D
S
R
A
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
45.94
20%
-166
- C2 -
3JST
1
PHS_BRUME
A:
[44-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
M
A
Q
A
A
L
-
Y
-
A
--
E
K
L
D
H
H
P
E
W
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
45.80
33%
116
- C2 -
2IBF
-
IPAA_SHIFL
B:
[2-22]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
I
Y
E
K
A
K
E
V
S
S
A
L
-
S
K
V
L
S
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
44.82
10%
73
- C2 -
1IN0
3
Y1034_HAEIN
A:
[2-163]
--------------------------------------------------------------------------------------------------------------------------P
S
F
D
I
V
S
E
I
T
L
H
E
V
R
N
A
V
E
N
A
N
R
V
L
S
T
RYDFRG
V
E
A
V
I
E
L
NEKNE
T
I
K
I
T
T
ES
D
F
Q
L
E
Q
L
I
E
I
L
I
G
S
C
I
K
R
GIEHSSLDIPA
E
S
E
H
H
GK
L
Y
S
K
E
I
K
L
KQGIE
T
E
M
A
K
K
I
T
K
L
V
K
D
S
K
I
-
K
-
V
--
Q
T
Q
I
Q
G
E
Q
V
R
V
T
G
K
S
R
D
D
L
-
Q
A
V
I
Q
L
V
K
S
AEL
G
Q
P
F
Q
F
NNFRD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
43.47
33%
-86
- C2 -
3B57
-
?
A:
[188-203]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
D
F
I
Q
A
L
E
K
-
E
-
L
--
K
V
L
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
43.32
22%
-41
- C2 -
1DK0
1
HASA_SERMA
A:
[127-153]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
H
--
D
G
V
V
H
Q
V
V
Y
G
L
M
S
G
D
T
G
A
L
-
E
T
A
L
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
40.91
28%
-136
- C2 -
3UID
-
?
A:
[149-164]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
A
I
N
Q
I
D
A
-
L
-
L
--
T
A
T
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
39.30
31%
-112
* C2 *
2IBF
-
D:
[5-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
K
A
K
E
V
S
S
A
L
-
S
K
V
L
S
K
I
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.30
18%
1
- C2 -
4O6U
1
?
A:
[127-154]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
-
G
-
R
--
D
G
T
V
H
K
V
V
Y
G
L
M
S
G
D
S
S
A
L
-
Q
G
Q
I
D
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
37.03
17%
150
- C2 -
1F1E
1
?
A:
[4-154]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELP
K
A
A
I
E
R
I
F
R
Q
G
I
GE
R
R
L
S
Q
D
A
K
D
T
I
Y
D
F
V
P
-
T
M
A
--
E
Y
V
A
N
A
A
K
S
V
L
D
A
S
G
K
K
T
L
M
E
E
H
L
K
A
L
A
D
V
L
MVEGVEDYDGELFG
R
A
T
V
R
R
I
L
K
R
A
GIERAS
S
D
A
V
D
L
Y
N
K
L
I
C
R
A
T
E
E
L
G
E
K
A
A
E
Y
A
D
E
D
GRKTVQ
G
E
D
V
E
K
A
I
T
Y
S
M
PKGGEL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------