@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20470: (2016-07-02 )
MNLYEIMLEHFAPKGSERGIFTYLLAQSDEEVYEWLKTDPSLSDGRAVYTPYQDNEANGKTYAIYNQSFDIVGHEKYKDRMIRLKGELNDEVELTDLYYGMTLVGWSMVKSDIPSEQIELLKDTGISIESA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------.......-----..10..------------.....-.20--------------------......------...30..--------...------------...-40.--.-......50------........--60........70---------...-------.....80-----......-------..----------------90......------..100.-----.-----..---.----..110-----.----.......120.......130------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------M
N
L
Y
E
I
M
-----
L
E
HFAP------------KGSER-
G
I
---------------------
F
T
Y
L
LA------QS
D
E
E
V
Y
--------
E
W
L
------------KTD-PSL--S-DG
R
A
V
YTP------YQDNEANG--
K
T
Y
A
I
Y
NQ
S
F
DI---------VG
H
-------
E
K
Y
K
D
R
M
-----
I
R
L
KGE-------LN----------------DEV
E
L
T
D
L
------
Y
Y
G
M
T
L
-----
V
-----
G
W
---
S
----
M
V
K
S------D----I
P
S
E
Q
I
E
L
L
K
DTGISIESA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
61.26
24%
56
- C3 -
4ZOX
-
SQT1_YEAST
A:
[53-431]
MSNNSL
T
Y
F
D
KHTDSVF
A
I
G
H
H
PNLP
L
V
C
T
G
GGDN
L
A
H
L
W
T
SHSQPPKFA
G
T
L
T
GYGESVI
S
C
S
F
T
SEGG
F
L
V
T
A
D
M
S
G
K
V
-----
L
V
H
M
G
Q
------------
K
G
G
A
Q
-
W
K
---------------------
L
A
S
Q
M
Q
------
E
V
E
E
--
I
--------
V
W
L
------------
K
T
H
-
P
T
I
--
A
-
R
T
F
A
F
G
A
T
DG
S
V
W
C
Y
Q
I
N
E
Q
D
G
--
S
L
E
Q
L
M
S
G
-
F
V
H
---------
Q
Q
D
-------
C
S
M
G
E
F
I
-----
N
T
D
K
G
E
-------------------------
N
T
L
E
L
V
T
C
------
S
L
D
S
T
I
-----
V
-----
A
W
---
N
CFTG
Q
Q
L
F
------
K
----
I
T
Q
A
E
I
K
G
L
E
A
P
W
I
S
L
S
L
A
PETLTKGNS
G
V
V
A
C
G
S
NNG
L
L
A
V
I
N
CNNGGAIL
H
L
S
T
V
I
E
L
K
PEQDELDASIE
S
I
S
W
S
SKFS
L
M
A
I
G
L
VCG
E
I
L
L
Y
DTSAWRVR
H
K
F
V
L
EDSVT
K
L
M
F
D
ND
D
L
F
A
S
C
ING
K
V
Y
Q
F
NARTGQEK
F
V
C
V
GHNMGVL
D
F
I
L
L
H
PVANTG
T
E
Q
K
R
K
V
I
T
A
G
DEG
V
S
L
V
F
E
V
P
N
25
Fugue
58.18
22%
-9
- C4 -
1Y88
10
Y1548_ARCFU
A:
[16-199]
-------------------------------------------------------------------------N
L
Y
F
Q
G
H
M
-----
V
A
R
L
L
E
E
H
G
F
E
T
K
T
NVIV
Q
G
N
C
V
-
E
Q
---------------------
E
I
D
V
V
A
------
E
R
D
G
E
R
Y
--------
M
I
E
C
K
F
H
NI------
P
V
Y
-
T
G
L
--
K
-
E
A
M
Y
T
Y
A
R
------
F
L
D
V
E
K
H
G
FT
Q
P
W
I
F
T
N
T
K
F
S
E
---------
E
A
K
-------
K
Y
A
G
C
V
G
-----
I
K
L
T
G
W
SYPEKEG
I
E
----------------
V
L
L
E
S
K
G
L
------
Y
P
I
T
I
L
RID
K
E
V
-----
L
D
---
E
----
L
V
R
A
GLVF
C
R
D
----
V
V
S
A
G
E
E
K
L
R
E
I
G
L
S
A
K
K
A
R
E
V
I
A
E
A
K
K
V
I
G
G
S-----------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
57.39
21%
64
- C- -
1Z8K
-
AOC2_ARATH
A:
[20-193]
----------------------------------------------------------------------K
V
Q
E
L
S
V
Y
E
I
N
ELDRH
S
P
K
I
L
K
------------
N
A
F
S
L
M
F
G
---------------------
L
G
D
L
V
P
------
F
T
N
K
L
Y
T
--------
G
D
L
------------
K
K
R
-
V
G
I
--
T
-
A
G
L
C
V
V
I
E
------
H
V
P
E
K
K
G
E
--
R
F
E
A
T
Y
S
F
Y
F
G
D
---------
Y
G
H
L
S
V
Q
G
P
Y
L
T
Y
E
D
S
F
-----
L
A
I
T
G
G
AGIFEG-
A
Y
----------------
G
Q
V
K
L
Q
Q
L
V
YPT
K
L
F
Y
T
F
Y
L
-----
K
-----
G
----------
L
A
N
------
D
----
L
P
L
E
L
T
G
T
P
V
P
P
S
K
D
I
E
P
A
P
E
A
K
A
LEPSGVISNYTN--------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
50.32
30%
-58
- C5 -
4R04
-
TOXA_PEPDI
A:
[1350-1415]
---------------------------------------------------------------------------------------------------------------------------------------------------
D
N
E
V
R
--------
E
I
S
------------
I
E
N
-
G
T
I
--
K
-
K
G
K
L
I
K
D
V
------
L
S
K
I
D
I
N
K
--
N
K
L
I
I
G
N
Q
T
I
D
F
---------
S
G
D
-------
I
D
N
K
D
R
Y
-----
I
F
L
T
C
E
-------
L
D
----------------
D
K
I
S
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
50.23
32%
21
- C5 -
2BKL
2
?
A:
[184-250]
-------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--------
E
W
L
------------
P
T
D
-
P
S
I
--
K
V
D
E
R
P
G
Y
T
T
------
I
R
Y
H
T
L
G
T
--
E
P
------
S
K
D
T
---------
V
V
H
-------
E
R
T
G
D
P
T
-----
T
F
L
Q
S
D
-------
L
S
----------------
R
D
G
K
Y
L
F
V
------
Y
---
I
L
-----
R
-----
G
W
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
49.45
17%
88
- C4 -
2LTL
-
NFU1_YEAST
A:
[1-119]
--------------------------------------------------------------------------
M
G
H
H
H
--------
H
H
H
S
H
------------
M
N
S
Q
R
-
L
I
---------------------
H
I
K
T
L
T
------
T
P
N
E
N
A
L
--------
K
F
L
------------
S
T
D
-
G
E
M
LQ
T
-
R
G
S
K
S
I
V
I
------
K
N
T
D
E
N
L
I
--
N
H
S
K
L
A
Q
Q
I
F
L
Q
---------
C
------------
P
G
V
E
-----
S
L
M
I
G
D
-------
D
F
----------------
L
T
I
N
K
D
R
M
-----------------
V
-----
H
W
---
N
----
S
I
K
P
------
E
----
I
I
D
L
L
T
K
Q
L
A
Y
G
E
D
V
I
S
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
48.85
32%
24
* C5 *
2BKL
1
?
B:
[184-250]
-------------------------------------------------------------------------------------------------------------------------------------------------------
Y
--------
E
W
L
------------
P
T
D
-
P
S
I
--
K
V
D
E
R
P
G
Y
T
T
------
I
R
Y
H
T
L
G
T
--
E
P
------
S
K
D
T
---------
V
V
H
-------
E
R
T
G
D
P
T
-----
T
F
L
Q
S
D
-------
L
S
----------------
R
D
G
K
Y
L
F
V
------
Y
---
I
L
-----
R
-----
G
W
---
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
47.58
33%
-364
- C4 -
1ZOQ
-
CBP_HUMAN
C:
[2080-2097]
------------------------------------------------------------------------------------------------------------------------------------------
P
------
Q
Q
Q
Q
Q
V
L
--------
N
I
L
------------
K
S
N
-
P
Q
L
--
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
46.05
14%
15
* C3 *
3N9B
10
LIGD_PSEAE
A:
[18-169]
--------------------------------------------------------------------------------
L
-----
L
R
Y
C
V
Q
------------
K
H
D
A
S
-
R
L
---------------------
H
Y
D
F
R
L
------
E
L
D
G
T
L
K
--------
S
W
A
V
PKGPCLDPA
V
K
R
L
A
-
V
Q
V
--
E
-
D
H
P
L
D
Y
A
D
------
F
E
G
S
I
P
Q
A
--
G
D
V
I
V
W
D
R
G
A
W
T
---------
P
L
D
-------
D
P
R
E
G
L
E
K
G
H
L
S
F
A
L
D
G
E
K------
L
S
----------------
G
R
W
H
L
I
R
T
------
N
L
R
G
K
Q
-----
S
-----
Q
W
---
F
----
L
V
K
A
------
K
DGEA
R
S
L
D
R
F
D
V
L
K
E
R
P
D
S
V
L
S
E
R------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
45.27
23%
-243
- C- -
1Z96
-
MUD1_SCHPO
A:
[297-309]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
K
I
A
Q
L
V
S
M
G
F
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
44.82
14%
-80
- C4 -
1UW4
-
REN3B_HUMAN
A:
[1-90]
----------------------------------------------------------------------------
L
S
K
V
V
-----
I
R
R
L
P
P
------------
T
L
T
K
E
-
Q
L
---------------------
Q
E
H
L
Q
P
------
M
P
E
H
D
Y
F
--------
E
F
F
------------
S
N
D
-
T
S
L
--------------------
Y
P
H
M
Y
A
--
R
A
Y
I
N
F
K
N
Q
------------------------------------------------
E
----------------
D
I
I
L
F
R
D
R
------
F
D
G
Y
V
F
-----
L
-----
D
N
---
K
----
G
Q
E
Y
------
P
----
A
I
V
E
F
A
P
F
Q
K
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
HHSearch
43.02
39%
-192
- C4 -
2AB1
-
AAMDC_HUMAN
A:
[77-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
S
S
T
V
E
Y
L
K
K
H
G
I
D
V
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
42.31
13%
0
- C- -
1P3H
2
CH10_MYCTU
A:
[1-99]
--------------------------------------------------------------------------------
A
-----
K
V
N
I
K
P
------------
L
E
-----------------------------------------
D
K
I
L
V
--------
Q
A
N
------------
E
A
E
-
T
T
T
--
A
-
S
G
L
V
I
P
D
T
------
A
K
E
K
P
Q
E
G
--
T
V
V
A
V
G
P
G
R
W
D
E
---------
D
G
------------
E
K
R
-----
I
P
L
D
V
A
-------
E
G
----------------
D
T
V
I
Y
S
K
-------------------------
Y
---
G
----
G
T
E
I
------
K
----
Y
N
G
E
E
Y
L
I
L
S
A
R
D
V
L
A
V
V
S
K------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
42.20
16%
-13
- C4 -
5C50
3
ATG13_HUMAN
B:
[5-189]
---------------------------------------------------------------------------
S
D
L
D
K
F
-----
I
K
F
F
A
L
------------
K
T
V
Q
V
-
I
V
Q
A
R
LG
E
K
I
C
T
R
S
S
SSPTGSDW
F
N
L
A
I
K
------
D
I
P
E
V
T
H
--------
E
A
K
------------
K
A
L
-
A
G
Q
LP
A
-
V
G
R
S
M
C
V
E
------
I
S
L
K
T
S
E
G
--
D
S
M
E
L
E
I
W
C
L
E
M
N
E
KCDKEIK
V
S
Y
-------
T
V
Y
N
R
L
S
-----
L
L
L
K
S
L
-------
L
A
I
T
R
V
T
P
A
Y
R
L
S
R
K
QGH
E
Y
V
I
L
Y
R
I
------
Y
F
G
E
V
Q
-----
L
SGLGE
G
F
---
Q
----
T
V
R
V
------
G
----
T
V
G
T
P
V
G
T
I
T
L
S
C
A
Y
R
I
N
L
AF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
41.84
19%
-11
- C2 -
1KU1
-
GEA2_YEAST
A:
[562-637]
----------------------------------------------------------------------------
E
F
I
E
C
-----
T
N
A
F
N
E
------------
K
P
-
K
K
-
G
I
---------------------
P
-
M
L
I
E
K
GFIAS
D
S
D
K
D
I
A
--------
E
F
L
------------
F
N
N
N
N
R
M
--
N
---
K
K
T
I
G
L
------
L
L
C
H
P
D
K
V
--
S
L
L
N
E
Y
I
R
L
F
D
F
---------
S
G
L
-------
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
40.94
27%
11
- C4 -
4DZH
2
?
A:
[166-226]
-------------------------------------------------------------------------------------------------------------------------------------
F
P
T
A
W
A
------
S
S
D
D
E
Y
F
A
R
A
G
E
L
H
D
Q
W
-------------
R
D
D
-
P
L
I
--
S
-
T
A
F
A
P
H
A
P
------
Y
T
V
N
D
A
N
F
--
E
R
V
R
M
L
A
D
Q
L
D
M
---------
P
V
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
39.71
35%
-3
- C4 -
1R88
-
MPT51_MYCTU
A:
[214-271]
---------------------------------------------------------------------------------------------------------------
V
---------------------
H
A
S
L
L
A
------
Q
N
N
T
R
V
W
--------
V
W
S
------------
P
T
N
-
P
G
A
--
S
-
D
P
A
A
M
I
G
--------
Q
A
A
E
A
M
G
--
N
S
R
M
F
Y
N
Q
Y
R
S
V
---------
G
G
H
-------
N
G
H
F
D
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
38.61
28%
-5
- C4 -
3AIU
1
HGGL_SECCE
A:
[305-354]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
D
V
---------
M
G
Y
-------
E
P
Y
Q
D
S
F
------------------
L
D
----------------
D
Q
A
R
E
R
S
I
------
D
Y
N
M
-------------
G
W
F
L
E
P
----
V
V
R
G
------
D
----
Y
P
F
S
M
R
S
L
I
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
38.48
28%
-13
- C4 -
3AIR
1
HGL1B_WHEAT
A:
[305-354]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
D
V
---------
M
G
Y
-------
E
P
Y
Q
D
S
F
------------------
L
D
----------------
D
Q
A
R
E
R
S
I
------
D
Y
N
M
-------------
G
W
F
L
E
P
----
V
V
R
G
------
D
----
Y
P
F
S
M
R
S
L
I
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
38.44
28%
-14
- C4 -
2DGA
2
HGL1B_WHEAT
A:
[305-354]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
D
V
---------
M
G
Y
-------
E
P
Y
Q
D
S
F
------------------
L
D
----------------
D
Q
A
R
E
R
S
I
------
D
Y
N
M
-------------
G
W
F
L
E
P
----
V
V
R
G
------
D
----
Y
P
F
S
M
R
S
L
I
G
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------