@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu21090: (2016-07-03 )
MTNEDFKYLNKHLETLAQLKQSGYKCDKEISTVISKLHKLMGLASKSKVNFYTLGSNVENENIADYKIGVDSPKGNRLLIVDPRTDCTTVLLVNVKDSKFENIKRRIASQTFGYQADLLVQILKEKRPDKLLIDTCGIGKGLMDMVIEKLKTQDIEMSPSGDLTYS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------.........10-----..--.---.....---20.....-...30........40.-.-......50........-60-......---.-.--------70........80--....----....90.......------.100--......-..110--------------........-.120.......130-.......140.......150-........160....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------MTN
E
D
F
K
Y
L
N
K
-----
H
L
--
E
---
T
L
A
Q
L
---
K
Q
SGYK
C
-
D
K
E
I
S
T
V
I
S
K
L
H
K
L
MG-L-ASKS
K
V
N
F
Y
T
LGSNVE-NE-NI
A
D
Y
K
---
I
-G--------VDSPKG
N
R
L
L
I
V--DPRT----D
C
T
T
V
L
L
V
NVKD
S
------
K
F
E
---
N
I
K
R
R
I
-
A
S
Q----------------TFG
Y
Q
A
D
L
-
L
V
Q
I
L
K
EKRP
D
K
L
L
-
I
DTCGIG
K
G
L
M
D
M
V
I
E
K
L-K-TQDIEMSPSGDLTYS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
63.35
20%
14
* C7 *
2CVH
-
RADB_THEKO
A:
[1-220]
--------------------------------------------------------------------------------------MLSTGT
K
S
L
D
S
L
L
G
GGFAPG
V
L
T
Q
V
Y
G
P
Y
ASG
K
T
T
L
A
L
Q
T
G
L
L
SGKKVAYVDTEGG
F
S
P
E
R
L
V
Q
M
A
E
T
R
GLN
P
E
--
E
---
A
L
S
R
F
---
I
L
F
T
P
S
D
-
F
K
E
Q
R
R
V
I
G
S
L
K
K
T
V
------
D
S
N
F
A
L
V
V
V
D
S
I
T
A
-
H
Y
-
R
A
E
E
N
R
SGL
I
-
A
--------
E
L
S
R
Q
L
Q
V
L
L
W
I
--
A
R
K
H
----
N
I
P
V
I
V
I
N
Q
V
H
F
D
------
S
R
T
---
E
M
T
K
P
V
-
A
E
Q
----------------
T
L
G
Y
R
C
K
D
-
I
L
R
L
D
K
L
P
K
P
-------------
G
L
R
V
A
V
L
E
R
H
-
R
------
F
R
P
E
G
L
M
A
Y
F
R
I
T
ERGIEDVE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
53.61
20%
90
- C5 -
4PW8
1
T23O_HUMAN
A:
[26-367]
---------------------------------------------------------------------------------------------------------I
Y
G
N
Y
L
HL
E
K
V
L
N
AQEL
Q
S
E
T
K
GNKIHD
E
H
L
F
I
I
T
H
Q
A
Y
E
L
W
F
K
Q
I
L
W
-----
E
L
--
D
---
S
V
R
E
I
---
F
Q
N
G
H
V
R
D
E
R
N
M
L
K
V
V
S
R
M
H
R
V
S
V
-
I
-
L
K
L
L
V
Q
Q
F
S
I
L
E
T
-
M
T
-
A
L
-
D
F
N
D
F
R
---
E
-
Y
--------
L
S
P
------------------------------
A
S
------
G
F
Q
---
S
L
Q
F
R
L
-
L
E
N
----------------
K
I
G
---------
V
L
Q
E
E
N
E
L
L
L
K
-
S
E
Q
---
E
K
T
L
L
E
L
V
E
A
W
L
E
R
-
T
P
G
L
E
--
P
H
G
F
N
F
W
G
K
L
E
K
N
I
T
R
G
L
E
E
E
F
I
R
I
Q
A
KEES
E
E
K
E
E
Q
V
A
E
F
Q
K
Q
K
E
V
L
L
S
L
F
D
E
K
R
H
E
H
L
L
S
K
GERRLS
Y
R
A
L
Q
G
A
L
M
I
Y
F
Y
R
EEPRF
Q
V
P
F
Q
L
L
T
S
L
M
D
I
D
S
L
M
T
K
W
R
Y
N
H
V
C
M
V
H
R
M
L
GSRYKVF
V
D
L
F
N
LSTYLIPRHWIPKMN-------------------------------------------------------------------------------------------------------------
31
Fugue
50.84
17%
67
- C7 -
2A35
-
?
A:
[4-215]
-------------------------------------------------------------------------------------------------------------------------------------TPK
R
V
L
L
A
G
A
T
G
L
T
G
E
H
L
L
D
-----
R
I
--
L
S
EP
T
L
A
K
V
I
A
P
A
R
K
A
L
A
E
-
H
P
R
L
D
N
P
V
G
P
L
A
E
L
L
P
Q
L
-
D
G
S
I
D
T
A
F
C
C
L
G
T
T
I
K
-
E
A
-
G
S
E
E
A
F
---
R
-
A
--------
V
D
F
D
L
P
L
A
V
G
K
R
--
A
L
E
M
----
G
A
R
H
Y
L
V
V
S
A
L
G
A
DAKSSI
F
Y
N
---
R
V
K
G
E
L
-
E
Q
A
L
Q
E
QGWP
Q
L
T
I
A
R
P
S
L
L
F
G
P
R
E
E
F
R
L
A
E
I
L
A
A
P
I
A
G
K
Y
H
G
I
E
A
C
D
L
A
R
A
L
W
R
L
A
L
E
E
G
-
K
G
V
R
F
V
E
S
D
E
L
R
K
L
G
K
G
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.94
22%
-76
- C6 -
1OHY
1
GABT_PIG
A:
[57-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
47.25
22%
-87
- C6 -
1OHW
1
GABT_PIG
A:
[57-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.37
22%
-64
- C6 -
4Y0D
1
GABT_PIG
A:
[48-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.35
22%
-57
- C6 -
1OHV
-
GABT_PIG
A:
[57-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.31
22%
-79
- C6 -
4Y0I
1
?
A:
[47-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
46.18
22%
-73
- C6 -
4ZSW
1
GABT_PIG
A:
[47-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
45.63
17%
-53
- C4 -
2AO9
-
?
A:
[13-132]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
--
A
---
K
L
D
E
L
---
K
Q
---------------
K
L
T
A
K
Q
I
-
Q
-
A
A
Y
L
L
V
E
N
E
L
M
E
E
E
K
R
-
T
Q
-
D
E
M
A
N
E
---
L
-
G
--------
I
N
---------------------
R
T
T
L
W
E
W
R
T
K
N
Q
------
D
F
I
---
A
F
K
S
E
V
-
A
D
S
----------------
F
L
A
E
K
R
E
Q
-
V
Y
S
K
L
M
Q
L
I
L
G
P
-------
Q
P
S
V
K
A
M
Q
L
Y
M
Q
R
F
-
G
-
L
L
T
D
K
K
V
I
E
G
D
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
45.46
19%
47
- C6 -
5C12
2
?
A:
[43-139]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
G
A
V
V
S
A
H
D
P
S
D
TGP-
D
A
K
G
Y
A
S
R
-----------
H
G
S
V--
V
K
R
I
A
E
G
L
L
M
----------------
D
I
N
E
G
A
D
W
-
A
T
S
L
A
I
E
D
G
A
D
H
Y
L
-
W
D
G
D
G
V
G
A
G
L
R
R
Q
T
T
E
A
F
-
S
-
G
K
K
I
T
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
45.16
22%
-67
- C6 -
4Y0H
-
GABT_PIG
A:
[48-117]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
44.91
26%
-162
- C6 -
4DAP
-
SFSA_ECOLI
A:
[156-174]
-----------------------------------------------------------------------------------------------------------------------------------------------------
R
G
Q
K
-----
H
L
--
R
---
E
L
M
S
V
---
A
A
E
G
Q
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
44.19
22%
-62
- C6 -
4ZSY
1
GABT_PIG
A:
[47-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
D
V
D
G
N
------
R
M
L
---
D
L
Y
S
Q
I
-
S
S
I
----------------
P
I
G
Y
S
H
P
A
-
L
V
K
L
V
Q
Q
P
Q
N
V
S
T
F
-
I
N
R
P
A
L
G
I
L
P
P
E
N
F
V
E
K
L
-
R
-
E
S
L
L
S
V
A
P
K
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
43.96
13%
-160
- C6 -
4UN2
-
B:
[332-361]
--------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
--
H
---
Q
L
R
Q
L
---
N
D
M
G
F
F
D
-
F
D
R
N
V
A
A
L
R
R
S
G
G
S
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
42.48
16%
50
- C6 -
3CPE
2
TERL_BPT4
A:
[418-503]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
K
Y
I
A
T
L
D
C
S
E
GRGQ
D
Y
H
A
L
H
I
I
D
V
T
D
D
------
V
W
E
---
Q
V
G
V
L
H
S
N
T
I
----------------
S
H
L
I
L
P
D
I
-
V
M
R
Y
L
V
E
Y
N
E
C
P
V
Y
-
I
E
L
N
S
T
G
V
S
V
A
K
S
L
Y
M
D
L
-
E
-
Y
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
42.00
16%
60
- C7 -
1PP7
4
?
U:
[5-118]
-------------------------------------------------------------------------------------------------------------------------------------------------
D
L
E
A
S
F
T
S
-----
R
L
PP
E
---
I
V
A
A
L
---
K
R
K
S
S
R
---
D
P
N
S
R
F
P
R
K
L
H
M
L
L
T
-
Y
-
L
A
S
N
P
Q
L
E
E
E
I
G
L
S
W
I
-
S
D
-
T
--
E
F
K
---
M
-----------------------------------------------------------
K
K
K
N
-
V
A
L
----------------
V
M
G
I
K
L
N
T
-
L
N
V
N
L
R
D
L
A
F
E
Q
L
Q
-
H
D
K
----
G
G
W
T
Q
W
K
R
S
G
F
-
T
-
R
N
S
V
F
E
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
37.86
16%
17
- C3 -
1Z2M
1
ISG15_HUMAN
A:
[3-154]
---------------------------------------------------------------------------------------------------------------------------------------------------
W
D
L
T
V
K
-----
M
L
--
A
-----
G
N
E
---
F
Q
V
S
L
S
S
-
S
M
S
V
S
E
L
K
A
Q
I
T
Q
K
I
G
-
V
H
A
F
Q
Q
R
L
A
V
H
P
S
G
V
A
L
Q
-
D
R
V
P
L
A
S
Q
G
---
L
-
G
PG
S
T
V
L
L
V
V
D
K
S
D
E
P
L
S
I
L
V
--
R
N
N
K
----
G
R
S
S
T
Y
E
V
R
L
T
Q
T
-------
V
A
---
H
L
K
Q
Q
V
-
S
G
L
----------------
E
-
G
V
Q
D
D
L
-
F
W
L
T
F
E
G
K
P
L
E
D
Q
L
-
P
--------
L
G
E
Y
G
L
K
P
L
-
S
-
T
V
F
M
N
L
R
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
37.55
15%
76
- C7 -
3DJL
2
AIDB_ECOLI
A:
[3-540]
WQT
H
T
V
F
NQPIPLNNSNLYLSD
G
A
L
C
E
A
V
T
R
E
GAGWD
S
D
F
L
A
S
I
G
Q
Q
L
G
T
A
E
S
L
E
L
G
R
L
A
N
V
N
P
P
E
L
L
RYDAQGRRLD
D
V
R
F
H
P
A
W
H
L
L
M
Q
A
L
C
T
N
RVHNLAWEEDARSG
A
F
V
A
R
A
A
R
F
M
L
H
A
Q
V
EA
G
S
L
C
P
I
T
M
T
F
A
A
T
P
L
L
L
Q
M
L
P
A
P
F
Q
D
-----
W
T
--
T
---
P
L
L
S
D
---
R
Y
------
D
S
H
L
L
P
G
G
Q
K
R
G
L
L
I
G
-
M
-
G
M
T
E
K
Q
G
----
G
S
D
V
M
S
N
T
-
T
R
A
E
R
L
---
E
D
G
--------
S
Y
R
L
V
G
H
K
W
F
F
S
--
V
P
Q
S
----
D
A
H
L
V
L
A
Q
T
A
G
G
L
------
S
C
F
---
F
V
P
R
F
L
-
P
D
-------------------
G
Q
R
N
A
I
-
R
L
E
R
L
K
D
K
L
G
N
R
---------
S
N
A
S
C
E
V
E
F
Q
D
A
-
I
-
G
W
L
L
G
L
E
G
E
G
I
R
L
I
L
K
M
G
G
M
T
R
F
D
C
A
L
G
S
H
A
M
M
R
R
A
F
S
L
A
I
Y
H
A
H
Q
RHVFGNPLIQQ
P
L
M
R
H
V
L
S
R
M
A
L
Q
L
E
G
Q
T
A
L
L
F
R
L
A
R
A
W
D
R
RAD
A
K
E
A
L
W
A
R
L
F
T
P
A
A
K
F
VICKR
G
M
P
F
V
A
E
A
M
E
V
L
GGIGYCEESE
L
P
R
L
Y
R
E
M
P
V
N
S
I
WEGS
G
N
I
M
C
L
D
V
L
R
V
L
N
KQAG
V
Y
D
L
L
S
E
A
F
V
E
V
KGQD
R
Y
F
D
R
A
V
R
R
L
Q
Q
Q
L
R
KPAEEL
G
R
E
I
T
H
Q
L
F
L
L
G
C
G
A
Q
M
L
K
YAS
P
P
M
A
Q
A
W
C
Q
V
M
LDTRGG
V
R
L
S
E
Q
I
Q
N
D
L
L
L
R
A
T
GGVC
12
HHSearch
37.18
11%
-13
- C6 -
3C6A
1
?
A:
[58-148]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
K
Y
V
A
T
L
D
C
S
E
G
RGQ
D
Y
H
A
L
Q
I
I
D
I
---------
T
E
F
PYK
Q
V
A
V
Y
H
S
N
T
T
----------------
S
H
F
I
L
P
D
I
-
V
F
K
Y
L
M
M
Y
N
E
C
P
V
Y
-
I
E
L
N
S
T
G
V
S
I
A
K
S
L
A
M
D
L
-
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------