@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu21640: (2016-07-03 )
MDNRKMLLRQKLKINKQKSLRVTLMSTLPRDMATTIEDCSLITSPELERILDKVQKKWNFELHKNDFAIKYSEHRKEYSWEYEVINHVQQTKLPDEQVYLYLGIEDSPIFLINGNWIIENFNFLWEQINNSDLWIIDFNFKYGVLVSRYGGYLDHDPNPNEIIYAVTEWGI
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------.........10.------------.....------..20......-..----------30..---.....----.40---..-..-.----....50......--..--60...------..--------..-----.70.-.......80....-....90.-----..--.....100-.-.--.....--110.--------...---...120..----.....130.-------.......-----.----140.----......150.......----160.......170-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------MD
N
R
K
M
L
L
R
Q
K
L------------KINKQ------K
S
L
R
V
T
L
M
S
T-L
P
----------
R
D
M
A
---
T
T
I
E
D
----CS----LI-T
S
-
P
----
E
L
E
R
I
L
D
K
V
Q
K
K--WN--
F
E
L
HK------N
D
--------
F
A
-----
I
K
Y
S
-
E
H
R
K
E
YS
W
E
Y
E
V
I
-
N
H
V
Q
Q
TK-----LP--D
E
Q
V
Y
L
Y
L
-G-I--EDS
P
I
--
F
L
I
N--------G
N
W
---
I
IE
N
F
N
F
L
----
W
E
QINN--S-------
D
L
W
I
I
D
F-----N----FKY
G
----
V
L
V
SRYGGYLDHDPNP----N
E
I
I
Y
A
VTEWGI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
79.94
29%
0
- C- -
3VUV
2
?
A:
[160-254]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
-
K
----
E
T
I
T
Y
L
E
K
V
L
K
I
--
Y
N
--
E
N
N
D
K
------
P
K
--------
D
A
-----
K
K
W
W
-
T
E
N
R
H
H
V
W
E
A
M
M
C
-
G
Y
--
Q
S
A
-----
Q
K
--
D
N
Q
C
T
G
Y
G
-
N
-
I
--
D
D
I
P
Q
--
F
L
-----------
R
W
---
F
R
E
W
G
T
Y
V
----
C
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
60.26
16%
-145
- C7 -
1QGT
-
?
A:
[1-142]
-------------------------------------------------------------------------------------------
M
D
I
D
P
Y
---------------------
K
E
------
F
G
A
T
V
E
L
L
S
F
-
L
P
----------
S
D
F
F
---
P
S
V
R
D
----
L
L
----
D
T
-
A
S
-
A
----
L
Y
R
E
A
L
E
S
P
E
H
C
--
S
P
--
H
H
T
A
L
------
R
Q
--------
A
I
-----
L
C
W
G
-
E
L
M
T
L
A
T
W
V
G
N
N
L
-
E
D
P
A
S
R
D
-----
L
V
--
V
N
Y
V
N
T
N
M
-
G
-
L
--
K
I
R
Q
L
--
L
W
F
H
--------
I
S
C
---
L
T
F
G
R
E
T
V
----
L
E
Y
L
V
S
--
F
-------
G
V
W
I
R
----------------------------
T
P
P
A
Y
R
P
P
----
N
A
P
I
L
S
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
59.44
14%
10
- C2 -
1RHY
8
HIS7_CRYNJ
A:
[2-187]
-------------------------------------------------------------------------------------------
S
E
R
I
A
S
V
E
R
T
------------------
T
------
S
E
T
H
I
S
C
T
I
D
-
L
D
----------
H
I
P
G
---
V
T
E
Q
K
----
I
N
----
V
S
-
T
G
I
G
----
F
L
D
H
M
F
T
A
L
A
K
H
G
G
M
S
--
L
Q
L
Q
C
K
G
DLTA
E
D
--------
C
A
-----
L
A
L
G
-
E
A
F
K
K
A
L
G
E
R
K
G
I
-
K
R
Y
G
Y
A
Y
-----
A
P
L
D
E
S
L
S
R
A
V
I
-
D
-
I
--
S
S
R
P
Y
--
F
M
C
H
L
PFTREKV
G
D
L
---
S
T
E
M
V
S
H
L
----
L
Q
S
F
A
F
--
A
-------
A
G
V
T
L
H
I
-----
D
----
S
I
R
G
--------------
E
N
N
H
H
I
----
A
E
S
A
F
K
A
L
A
L
A
I
R
M
A
I
SR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
58.32
18%
51
* C11 *
4I17
4
?
A:
[4-226]
------------------------------------------------------------------------------------------T
T
D
P
N
Q
L
K
N
E
G
N
D
------------
A
L
N
A
K
N
Y
A
V
A
F
E
K
Y
S
E
Y
L
K
L
T
-
N
N
----------
Q
D
S
V
---
T
A
Y
N
C
----
G
V
----
C
A
-
D
N
-
I
KK
Y
K
E
A
A
D
Y
F
D
I
A
I
K
K
--
N
Y
N
L
A
N
A
Y
I
------
G
K
--------
S
A
-----
A
Y
R
D
M
K
N
N
Q
E
Y
I
A
T
L
T
E
G
-
I
K
A
V
P
G
N
-----
A
T
--
I
E
K
L
Y
A
I
Y
-
Y
-
L
--
K
E
G
Q
K
--
F
Q
Q
A
--------
G
N
-----
I
E
K
A
E
E
N
----
Y
K
H
A
T
D
VT
S
-------
K
K
W
K
T
D
A
-----
L
----
Y
S
L
G
----
V
L
F
Y
N
N
G
A
D
V
L
R
K
A
T
P
LASS
N
K
E
K
Y
A
S
E
K
A
K
A
D
A
A
F
K
K
A
V
D
Y
L
G
E
A
V
T
L
S
PNR
T
E
I
K
Q
M
Q
D
Q
V
K
A
M
I-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.41
14%
3
- C11 -
4R7Q
5
?
A:
[3-219]
----------------------------------------------------------------------------------------ADS
L
P
E
R
I
D
L
F
V
S
L
F
DYNSAT
T
S
Y
D
I
R
S
I
Q
T
D
------
F
P
T
R
L
L
T
P
D
S
M
L
P
QTSEYP
L
K
D
I
Q
L
L
Y
---
K
L
A
Q
S
----
C
T
LSPL
I
T
-
E
P
-
L
----
V
F
T
R
S
L
C
K
G
S
S
L
--
S
P
--
R
W
F
A
R
------
S
G
LIHPGGGT
Y
A
-----
F
R
Y
A
-
E
K
Y
P
A
Q
F
A
N
L
L
P
Y
M
H
I
Q
E
R
P
N
-----
A
A
--
E
G
T
L
L
Y
H
L
Q
N
M
G
--
E
D
A
I
N
--
A
L
V
S
--------
G
A
S
M
--
F
G
S
G
-
S
D
L
----
W
L
R
K
G
D
--
I
-------
Y
Y
L
F
N
E
E
-----
T
----
W
L
T
N
----
A
N
K
A
G
L
S
Y
S
L
L
S
A
D
N
T
----
C
F
I
Q
R
G
N
I
C
W
D
V
E-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
50.33
16%
-151
* C6 *
2KXE
-
DP2S_PYRHO
A:
[1-72]
------------------------------------------------------------------------------------------------------------------------------------------
M
----------
D
E
F
V
---
K
G
L
M
K
----
N
G
----
Y
L
-
I
T
-
P
----
S
A
Y
Y
L
L
V
G
H
F
N
E
--
G
K
--
F
S
---------
L
I
--------
E
L
-----
I
K
F
A
-
K
S
R
E
T
F
I
I
D
D
E
I
A
-
N
E
F
L
K
S
I
GAEVE
L
P
--
Q
E
I
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
48.89
29%
42
- C6 -
3VUU
1
?
A:
[126-218]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
-
K
----
E
T
I
T
Y
L
E
K
V
L
K
I
--
Y
N
--
E
N
N
D
K
------
P
K
--------
D
A
-----
K
K
W
W
-
T
E
N
R
H
H
V
W
E
A
M
M
C
-
G
Y
--
Q
S
A
-----
Q
K
--
D
N
Q
C
T
G
Y
G
-
N
-
I
--
D
D
I
P
Q
--
F
L
-----------
R
W
---
F
R
E
W
G
T
Y
V
----
C
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
45.54
14%
51
* C7 *
4PP4
4
NS1_MUMIP
A:
[27-274]
-----------------------------------------------------------------YS
D
E
V
L
G
A
T
N
W
L
K
E
K
S
N
Q
E
V
F
S
F
V
F
K
N
E
N
V
Q
L
N
G
K
D
I
G
------------
W
N
S
Y
K
------
K
E
L
Q
E
D
E
L
K
S
-
L
Q
----------
R
G
A
E
---
T
T
W
D
Q
----
S
E
--------
D
-
M
----
E
W
E
T
T
V
D
E
M
T
K
K
--
Q
V
--
F
I
F
D
S
------
L
V
--------
K
K
-----
C
L
F
E
-
V
L
N
T
K
N
I
F
P
G
D
V
N
-
W
F
V
Q
H
E
W
-----
G
K
--
D
Q
G
W
H
C
H
V
-
L
-
I
--
G
G
K
D
F
--
S
Q
A
Q
--------
G
K
W
---
W
R
R
Q
L
N
V
Y
----
W
S
R
W
L
V
--
T
A
CNVQLT
P
A
E
R
I
K
L
-----
R
----
E
I
A
E
D
N
EW
V
T
L
L
T
Y
K
H
K
Q
T
K
K
D
Y
T
----
K
C
V
L
F
G
N
M
I
A
Y
Y
FLT
K
K
K
I
STSPPRDGGYF
L
S
S
D
SGWKTNFLK
E
G
E
R
H
L
V
S
K
L
Y
T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.61
13%
44
- C4 -
3EPO
1
THIC_CAUCR
A:
[5-546]
S
T
I
K
A
V
A
E
T
I
S
T
G
P
IPG
S
R
K
V
Y
Q
A
G
ELFPE
L
R
V
P
F
R
E
V
A
V
H
PSANE
P
P
V
T
I
Y
D
PSGPYSDPA
I
Q
I
D
IEKGLPRTR
E
A
L
V
V
A
R
GDVEEVADP
R
Q
V
P
E
F
P
D
T
G
R
K
------------
I
Y
R
A
K
------
P
G
K
L
V
T
Q
L
E
Y
-
A
R
----------
A
G
---------------------
I
-
I
T
-
A
----
E
M
E
Y
V
A
I
R
E
N
L
R
---------
R
E
------
Q
D
--------
R
P
-----
C
V
R
D
-
G
E
D
F
G
A
S
I
P
D
F
V
T
-
P
E
F
V
R
Q
E
-----
I
A
--
R
G
R
A
I
I
P
A
-
N
-
I
NH
G
E
L
E
P
--
M
A
I
G
--------
R
N
F
---
L
V
------------
K
I
N
A
--
N
-------
I
G
N
T
V
A
D
-----
E
----
V
D
K
L
----
V
W
A
T
R
W
G
A
D
T
V
M
D
L
S
T
----
G
R
N
I
H
N
I
R
D
W
I
I
R
N
SS
V
P
I
G
T
V
P
I
Y
Q
A
L
E
K
V
NGVAEDLN
W
E
V
F
R
D
T
L
I
E
Q
C
E
Q
GVDYFTIHAGVRLPFIPMTAKRVTGIVS
R
G
G
S
I
M
A
K
W
C
L
A
H
HKEN
F
L
Y
E
R
F
D
E
I
C
E
I
M
R
A
Y
DVSFSLGDGLRPGSTADAND
E
A
Q
F
S
E
L
R
T
L
G
E
L
T
K
V
A
W
K
H
G
V
Q
V
M
I
E
G
P
G
HVAMHK
I
K
A
N
M
D
E
Q
L
K
H
CHEA
P
F
Y
T
LGPLTTDIAPGY
D
H
I
T
S
A
I
G
A
A
M
I
G
W
F
GTA
M
L
C
Y
V
T
PKEH
L
G
L
P
D
R
D
D
V
K
T
G
V
I
T
Y
K
L
A
A
H
A
A
D
L
A
K
GHPGA
A
M
W
D
D
A
I
S
R
A
R
F
E
FR
W
E
D
Q
F
N
L
GLD
P
E
T
A
R
K
F
H
15
HHSearch
43.66
17%
-348
- C8 -
1Z6M
-
?
A:
[144-161]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
-
H
-
I
--
Q
F
V
P
T
--
I
I
I
G
--------
E
Y
I
---
F
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
42.80
15%
-34
- C6 -
3U4E
3
?
G:
[1-122]
---------------------------------------------------------------------------------------------------
M
T
T
F
------------
K
L
A
A
C
------
V
T
L
R
C
T
N
A
T
I
--
N
----------
G
S
L
T
---
E
E
V
K
N
----
C
S
----
F
N
-
I
T
-
T
----
E
L
R
---
D
K
K
Q
K
A
--
Y
A
--
L
F
Y
R
P
------
S
E
--------
Y
--------------------
I
L
I
N
-
C
Q
T
T
T
T
E
-----
A
V
--
D
A
A
T
A
A
K
V
-
F
-
K
--
Q
Y
A
N
D
--
N
G
I
D
--------
G
E
W
---
T
Y
D
D
A
T
K
T
----
F
T
V
T
E
G
--
L
-------
E
V
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
37.27
24%
-17
- C5 -
4HOW
3
?
A:
[446-537]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
L
-
Q
N
V
R
Q
T
S
-----
R
D
--
N
S
R
T
P
F
Q
W
-
D
-
A
--
S
K
N
A
G
--
F
T
S
G
--------
T
P
W
---
L
K
I
N
P
N
Y
K
EINS
A
D
Q
I
N
N
--
P
-------
N
S
-
V
F
N
Y
Y
R
K
L
I
N
----
I
R
H
D
----
I
P
A
L
T
Y
G
S
Y
I
D
L
D
P
D
N
----
N
S
-
V
Y
A
Y
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
36.24
45%
-
- C9 -
3JUR
-
?
A:
[11-30]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
E
I
L
-
N
H
V
R
E
P
Q
-----
I
P
--
D
R
E
V
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.21
17%
32
- C6 -
1SED
8
YHAI_BACSU
A:
[27-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
Y
P
F
Y
A
L
L
I
D
--------
K
G
L
---
S
K
E
E
G
E
A
V
----
M
R
I
C
D
E
--
L
-------
S
E
E
L
A
T
Q
-----
K
A
Q
GF
V
T
F
D
----
K
L
L
A
L
F
A
G
Q
L
N
E
K
L
D
V
----
H
E
T
I
F
A
L
Y
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
35.68
31%
-23
* C8 *
3EQO
1
?
A:
[632-688]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
G
L
-
A
-
Q
--
T
E
T
P
Y
--
F
Q
P
N
--------
P
N
P
PAP
F
I
T
N
S
N
F
D
----
P
S
Q
L
G
Q
--
G
-------
D
A
W
A
M
T
V
-----
Q
----
N
S
H
G
----
I
L
V
F
G
A
G
F
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.04
17%
-307
- C8 -
2ZNM
-
?
A:
[143-160]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
Q
Y
-
R
-
I
--
D
S
T
P
T
--
V
I
V
G
--------
G
K
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
34.72
31%
-23
- C8 -
3EQN
2
?
A:
[632-688]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
G
L
-
A
-
Q
--
T
E
T
P
Y
--
F
Q
P
N
--------
P
N
P
PAP
F
I
T
N
S
N
F
D
----
P
S
Q
L
G
Q
--
G
-------
D
A
W
A
M
T
V
-----
Q
----
N
S
H
G
----
I
L
V
F
G
A
G
F
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
31.74
11%
-30
- C7 -
4RFX
-
DCTN1_CHICK
A:
[432-531]
---------------------------------------------------------------------------------------M
V
E
T
L
T
E
R
N
L
D
L
E
E
K
V
------------
R
E
L
R
E
------
T
V
G
D
L
E
A
M
N
E
-
M
N
----------
D
E
L
Q
---
E
N
A
R
E
----
T
E
----
L
E
-
L
R
-
E
----
Q
L
D
L
A
A
A
R
V
R
E
A
--
E
K
--
R
V
E
A
A
------
Q
E
--------
T
V
-----
A
D
Y
Q
-
Q
T
I
K
K
Y
R
E
L
T
A
H
L
-
Q
D
V
N
R
E
L
-----
M
S
--
Q
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
29.50
17%
21
- C6 -
4WLR
-
ADRM1_HUMAN
B:
[305-382]
-------------------------------------------------------------------------------------------------------------------------------
D
V
Q
E
R
L
L
P
Y
-
L
P
----------
S
G
E
S
LPQ
T
A
D
E
I
----
Q
N
----
T
L
-
T
S
-
P
----
Q
F
Q
Q
A
L
G
M
F
S
A
--------
A
L
A
S
------
G
Q
--------
L
G
P
L
M
C
Q
F
G
L
P
-
A
E
A
V
E
A
A
N
K
G
D
V
E
-
A
F
A
K
A
M
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.43
16%
55
- C6 -
3GGY
-
IST1_YEAST
A:
[97-138]
------------------------------------------------------------------------------------------------------------------------------------
V
K
E
H
-
M
D
----------
D
G
I
N
---
E
A
I
R
S
L
I
Y
A
I
L
----
F
V
D
E
V
-
K
----
E
L
S
Q
L
K
D
L
M
A
W
K
--
I
N
--
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------