@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu24410: (2016-07-08 )
MGVDVNVIFQIAGVGIVVAFLHTILDQMGKKEYAQWVTLLGFIYILFMVATIVDDLFKKIKAVFLFQG
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-....-10.-----.-------...-...20---......-...-30........40......-----.-----------------.----50......--..60.......---------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGV
D
V
-
N
V
I
F
-
Q
IA-----
G
-------
V
G
I
-
V
V
A
F
----
L
H
T
I
L
D
-QM
G
-
K
K
E
Y
A
Q
W
V
T
L
L
G
F
I
Y
I
L
F
-----
M
-----------------
V
----
A
T
I
V
D
D
L
F
--
K
K
I
K
A
V
F
L
FQG---------------------------------------------------------------------------------------------------------------------
22
Fugue
59.17
26%
-126
- C5 -
4IMP
1
?
A:
[31-550]
SD
P
A
A
G
W
F
W
Q
A
V
A
R
QD
L
K
S
V
S
D
A
L
DLDADAP
L
S
A
T
L
P
A
L
S
V
W
H
R
Q
E
R
E
R
V
L
A
D
G
W
R
Y
R
V
D
W
V
R
V
A
P
Q
P
VRR
T
R
E
T
W
L
L
V
V
P
PGGIE
E
A
L
V
E
R
L
T
D
A
L
N
T
R
G
I
S
T
L
R
L
D
V
P
P
AAT
S
G
E
L
A
T
E
L
R
A
A
A
D
G
DPVK
A
I
L
S
LTALDERPHPECKDVP
S
G
I
A
L
L
L
N
L
V
K
A
L
G
E
A
DLR
I
P
L
W
T
I
T
R
GAVKAGPADRLLR
P
M
Q
A
Q
A
W
G
L
G
R
V
A
A
L
E
HPERWG
G
L
I
D
L
P
DSLDGD
V
L
T
R
L
G
E
A
L
T
NGLAED
Q
L
A
I
R
QS
G
V
L
A
R
R
L
V
P
A
P
ANQPAGRK
W
R
P
R
G
S
A
L
I
T
GGLG
A
V
G
A
Q
V
A
R
W
L
A
E
I
GAE
R
I
V
L
T
S
RRGNQAAG
A
A
E
L
E
A
E
L
R
A
L
G
A
Q
V
S
I
V
ACDVTD
R
A
E
M
S
A
L
L
A
E
F
D
V
-
T
A
V
F
-
H
A
A
-----
G
-------
V
G
R
-
L
L
P
L
----
A
E
T
-------------
D
Q
N
G
L
A
E
I
C
A
A
K
V
-----
R
-----------------
G
----
A
Q
V
L
D
E
L
C
DS
T
D
L
D
A
F
V
L
F
S
S
GAGVWGGGGQ
G
A
Y
G
A
A
N
A
F
L
D
T
L
A
E
Q
R
R
A
R
G
L
P
A
T
S
I
S
W
G
S
WAGGGMADG
A
A
G
E
H
L
R
R
R
G
I
R
P
M
P
A
A
S
A
I
L
A
L
Q
E
V
L
D
Q
DET
C
V
S
I
A
DVD
W
D
R
F
V
P
T
F
A
A
TRATRLFDEV
P
A
A
R
K
AM
15
Fugue
57.73
14%
-106
* C5 *
1S12
2
?
A:
[1-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
I
K
V
T
V
T
N
S
F
F
-
E
V
T
-----
G
H
A
PD
K
T
L
C
A
S
-
V
S
L
L
----
T
Q
H
V
A
N
-
F
L
K
-
A
E
K
K
A
K
I
K
K
E
S
G
Y
L
K
V
K
F
E
ELE
N
C
-----------------
E
----
V
K
V
L
A
A
M
V
--
R
S
L
K
E
L
E
Q
K
F
P
SQ
I
R
V
E
V
I
D
N
G
S---------------------------------------------------------------------------------------------------------
14
Fugue
49.52
14%
-80
- C- -
5DPO
-
?
A:
[11-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F
F
K
D
Y
Q
K
K
N
V
M
R
L
L
Q
D
S
L
-
E
K
I
I
-
N
E
W
L
K
TDD
E
-------
S
H
T
-
K
L
K
S
----
L
Q
E
L
S
E
M
D
I
N
-
A
T
S
F
A
E
H
S
P
L
P
D
F
V
T
R
L
W
-----
L
D
P
H
K
A
L
D
A
M
D
K
NIS
K
N
E
I
----
R
K
L
I
K
E
T
A
--
R
E
I
E
L
V
F
T
H
Q
K
---------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.28
36%
-137
- C- -
4LSO
-
VIRB8_BARQU
A:
[176-211]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
Q
V
R
Y
----
Y
K
T
I
R
E
-
L
N
G
-
K
E
N
I
S
H
W
V
S
I
L
N
F
S
Y
I
N
A
-----
H
-----------------
I
----
S
T
----------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.52
30%
-138
- C4 -
4MEI
-
?
A:
[164-199]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
Q
V
R
Y
----
Y
K
T
V
R
D
-
F
S
E
-
K
E
T
I
S
H
W
V
S
I
L
N
F
S
Y
V
N
A
-----
H
-----------------
I
----
S
T
----------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
46.94
5%
-215
- C5 -
2JX2
-
A:
[35-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
R
K
-
G
N
T
L
-
Y
V
Y
-----
G
-------
E
D
M
-
T
P
T
L
----
L
R
G
A
F
S
-
P
F
G
-
N
I
I
D
L
S
M
D
P
P
R
N
C
A
F
V
T
Y
-----
E
-----------------
K
----
M
E
S
A
D
Q
A
V
--
A
E
L
N
G
T
Q
V
E
S
V
Q
L
K
V
N
I
A
RKQPMLDAATGKS-------------------------------------------------------------------------------------------------
17
Fugue
42.61
5%
-230
- C5 -
2BZ2
-
A:
[35-113]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
R
K
-
G
N
T
L
-
Y
V
Y
-----
G
-------
E
D
M
-
T
P
T
L
----
L
R
G
A
F
S
-
P
F
G
-
N
I
I
D
L
S
M
D
P
P
R
N
C
A
F
V
T
Y
-----
E
-----------------
K
----
M
E
S
A
D
Q
A
V
--
A
E
L
N
G
T
Q
V
E
S
V
Q
L
K
V
N
I
A
R
KQPM---------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.25
46%
3
- C5 -
4ZM6
1
?
A:
[810-841]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-------
I
G
I
G
I
V
A
H
----
A
N
W
L
L
K
-
Q
R
G
V
T
K
S
Y
V
D
W
V
E
L
L
D
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
39.06
14%
-179
- C5 -
1UG2
-
A:
[1-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GP
S
G
S
S
G
A
G
A
L
P
K
A
S
E
A
T
V
C
A
-
N
N
S
K
-
V
S
S
-----
T
-------
G
E
K
-
V
V
L
W
----
T
R
E
A
D
R
-
V
I
L
-
T
M
C
Q
E
Q
G
A
Q
P
H
T
F
S
V
I
S
Q
-----
Q
-----------------
L
GNKT
P
V
E
V
S
H
R
F
--
R
E
L
M
Q
L
F
H
T
A
C
ESGPSSG--------------------------------------------------------------------------------------------------------------
16
Fugue
38.78
11%
-58
- C5 -
1SJQ
-
PTBP1_HUMAN
A:
[12-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
V
P
S
-
R
V
I
H
I
R
K
L
-----
P
-------
I
D
V
-
T
E
G
E
----
V
I
S
L
G
L
-
P
F
G
-
K
V
T
N
L
L
M
L
K
G
K
N
Q
A
F
I
E
M
-----
N
-----------------
T
----
E
E
A
A
N
T
M
V
--
N
Y
Y
T
S
V
T
P
V
L
R
G
Q
P
I
Y
I
Q
F
S
NHKELKTDSS--------------------------------------------------------------------------------------------------
18
Fugue
38.31
21%
-65
- C5 -
2MRF
1
A:
[1-33]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
R
Q
V
T
-
K
V
D
C
-
P
V
C
-----
G
-------
V
N
I
-
P
E
S
H
----
I
N
K
H
L
D
-
S
C
L
-
S
R
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
34.76
29%
-600
- C5 -
2M59
-
VGFR2_HUMAN
A:
[11-31]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-----
G
-------
T
A
V
-
I
A
M
F
F
W
L
L
L
V
I
I
L
R
-
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
30.52
18%
-185
- C1 -
3OA1
-
PHOSP_RABVP
A:
[163-173]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
N
L
-
D
D
I
V
-
K
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
30.48
10%
-137
- C5 -
2MVT
-
?
A:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
D
K
C
-
E
---------------------------------
D
S
L
R
R
-
E
I
A
-
C
T
K
C
R
D
R
V
R
T
D
D
Y
F
Y
--------------------------
E
----
C
C
T
S
E
S
T
F
--
K
K
C
Q
T
M
L
H
Q
-----------------------------------------------------------------------------------------------------------------------
9
HHSearch
29.24
18%
-215
- C2 -
1VYI
-
A:
[46-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
N
L
-
D
D
I
V
-
K
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
27.54
18%
-178
- C5 -
2ROD
-
APR_MOUSE
B:
[17-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
-
L
P
P
E
----
F
A
A
Q
L
R
-
K
I
G
-
D
K
V
Y
C
T
W
S
A
P
D
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.52
9%
-298
- C5 -
3ZE3
4
KDGL_ECOLI
A:
[45-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-------
A
V
L
-
L
C
V
V
----
I
A
A
W
L
D
-
V
D
--
A
V
T
R
V
L
L
I
S
S
V
M
L
V
M
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
26.36
17%
-81
- C5 -
3BO0
-
SECE_METJA
B:
[29-52]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
E
Y
L
A
V
A
K
V
T
A
L
G
I
S
L
L
-----
G
-----------------
I
----
I
G
Y
I
--------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
23.27
23%
-241
- C5 -
4B19
-
?
A:
[6-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
I
I
-
A
P
V
-----
I
-------
S
G
C
-
A
I
A
F
----
F
S
Y
W
L
S
-
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
20.10
20%
-
- C3 -
5EH6
-
GLPA_HUMAN
A:
[84-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
G
T
I
L
L
I
S
-----
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------