@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25040: (2016-07-09 )
MNVFQLFIKSTYSPRDIAKTRFQGIGKAILYVFLLSVLFAIPTAYYVSTGTVKSMNGFKTVLNKDFPDFTISNGKLQTDEKKATESQANGFVIVFDPTDSYGTEQIEAKQNAIGILQNKFVLAIDGQAQEMSYSMMPSELQKKDVIAGLNQNKAMIVTVLSALIFLVTAAGKFIEVSFLALIGLIIKNSQKKHLSYHQLWKLSAYSITLSTVFFTIMRALEATVPSEFLLNWFVNFVILFLVLKEIPSKKVINKS
Atome Classification :
(20 SA)
---------------------------------------.........10........20........30------------------.......-------..--40........50......-------..60-......----...70........80........90........100.--......110.......-----120.......130.--..---....----------------------140.......150-........-------.160.--......170...--.-...180.......190.......200..--.....210----------........220.......230.......240.......---250...--------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------M
N
V
F
Q
L
F
I
K
STY
S
P
R
D
I
A
K
T
R
F
Q
G
I
G
K
A
I
L
-------------------
Y
V
F
L
L
S
V
-------
L
F
--AIP
T
A
Y
Y
V
STG
T
V
KSMN
G
-------
F
K
T
--
V
L
NKDF----PDFTISNGKLQT
D
E
KKATESQAN
G
F
V
I
V
F
DPTDSYG
T
--
E
Q
I
E
A
K
Q
N
A
I
G
ILQN
K
-----
F
V
L
A
IDG
Q
A
Q
E
M
S
Y
--SM---M
P
S
E
----------------------
L
Q
K
K
D
V
I
AGLN---QN
K
A
M
I
V
T
-------
V
L
S
A
L
--
I
F
L
V
TAAG
K
F
I
E
--
V
-
S
F
L
A
L
I
G
L
I
IKNSQKKH
L
S
Y
H
Q
L
W
K
L
S
A
--
Y
S
I
T
L
S
T
-----------
V
F
F
T
I
M
R
A
L
E
ATV
P
S
E
F
L
L
N
W
F
V
N
F
V
I
L
F
L
V
L
K
EIPSK---KVINKS--------------------------------------------------------------------
24
Fugue
57.24
16%
20
* C5 *
3J6V
-
RT09_BOVIN
I:
[68-396]
--------------------------SYTVDFIKKQIEE
F
N
I
G
K
R
H
L
A
N
M
M
G
E
D
P
E
T
F
T
Q
-
E
D
V
D
R
A
I
T
-------------------
Y
L
F
P
S
G
L
FEKRARP
I
M
--
K
H
P
E
E
I
F
P
K
Q
R
A
V
Q
W
G
E
D
GRPFHFL
F
Y
T
--
G
K
Q
S
Y
Y
----
S
L
M
H
E
A
Y
G
K
V
L
H
A
E
E
R
Q
D
Q
L
R
A
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L
F
----
S
E
K
S
K
S
K
--
D
L
I
G
S
R
W
L
I
K
E
E
L
E
E
M
-----
L
V
E
K
L
S
D
Q
D
Y
A
Q
F
I
--
R
L
---
L
E
R
L
SALPCDAAEEEFVGRFRRTVTV
Q
S
K
K
H
L
I
E
P
L
Q
YDE
Q
G
M
A
F
S
T
G
QGKRKTA
N
A
E
A
V
--
V
Y
G
H
G
S
G
K
I
E
I
N
--
G
-
V
D
Y
L
L
Y
F
P
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R
E
Q
L
M
F
P
F
H
F
L
D
R
L
G
K
--
H
D
V
T
C
T
V
SGGGRSSQAGA
I
R
L
A
M
S
R
A
L
-
C
S
F
I
T
E
D
E
V
E
W
M
R
Q
A
G
L
L
T
T
D
P
R
V
R
E
R
K
---
K
P
G
Q
E
G
ARRKFTWKKR----------------------------------------------------------
31
Fugue
52.03
13%
-74
- C1 -
4O6M
13
?
A:
[29-370]
---------------------------------------
M
R
L
A
Y
V
K
N
H
E
I
Y
G
E
K
L
L
G
L
T
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R
E
R
I
E
K
T
L
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R
A
G
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R
F
F
D
E
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L
E
E
A
E
D
Y
L
I
I
L
E
P
-------
V
L
--
I
L
E
R
D
L
L
L
E
G
R
K
I
L
V
S
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G
-------
F
T
V
G
Y
F
F
G
G
D
F
----
R
T
--
V
F
D
G
N
L
Q
S
S
I
E
K
Y
L
S
L
N
N
L
E
S
Y
E
I
W
A
I
K
L
S
N
D
N
--
L
K
T
A
E
K
L
L
L
S
S
L
I
D
G
W
-----
I
A
R
E
I
N
R
K
V
S
L
R
I
S
--
R
L
---
L
A
D
T
----------------------
S
V
T
P
N
Q
I
T
V
F
S
---
F
F
L
S
L
V
G
S
-------
A
L
F
L
L
NS
Y
L
T
T
L
L
A
G
V
I
I
Q
--
L
H
S
I
I
D
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C
D
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E
I
A
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K
F
M
E
S
K
Y
G
A
W
L
D
G
V
L
--
D
R
Y
S
D
F
I
-----------
I
V
F
S
I
T
Y
V
L
S
A
S
N
P
V
Y
W
I
I
G
F
L
A
A
F
A
S
L
M
I
A
Y
T
G
D
K
F
V
---
A
A
Y
M
R
T
YSPEGFAIPIT
R
D
F
R
L
L
I
I
F
A
C
S
V
V
NL
P
S
L
A
L
V
I
I
A
L
L
G
N
F
E
A
L
R
R
I
V
A
L
RSY---------------
28
Fugue
45.64
17%
-91
- C4 -
1DDB
-
BID_MOUSE
A:
[1-195]
---------------------------------------
M
D
S
---------
E
V
S
N
G
S
G
L
G
A
K
H
I
T
D
L
L
V
-------------------
F
G
F
L
Q
S
--------------------
S
G
C
T
R
Q
E
L
E
V
-------
L
G
R
--
E
L
P
V
Q
A
----
Y
W
E
A
D
L
E
D
E
L
Q
T
D
G
S
Q
A
S
R
S
F
N
Q
G
R
I
E
P
D
S
E
S
Q
E
E
I
I
--
H
N
I
A
R
H
L
A
Q
I
G
D
E
M
D
H
-----
N
I
Q
P
--
T
L
V
R
Q
L
A
A
--
Q
F
---
M
N
G
S
----------------------
L
S
E
E
D
K
R
N
C
L
A
---
K
A
L
D
E
V
K
T
-------
A
F
P
R
----------
D
M
E
N
D
--
K
-
A
M
L
I
M
T
M
L
L
A
K
K
V
A
S
H
A
P
S
L
--------------
L
R
D
-----------
V
F
H
T
T
V
N
F
I
N
Q
N
L
F
S
----------
Y
V
R
N
L
V
R
N
E
M
D
-------------------------------------------------------------------------------
23
Fugue
45.28
9%
-27
- C4 -
5DJ3
2
?
A:
[23-373]
LNIADGHARQALS
P
G
Q
Q
K
I
V
N
E
L
P
V
L
W
A
E
S
E
Q
RP
V
Q
Q
I
E
S
E
A
H
Q
A
Y
F
T
L
L
G
Q
H
G
Y
P
A
E
P
G
R
V
L
S
C
Y
S
S
S
-------------------
V
S
M
E
I
L
A
-------
R
S
--
L
S
A
S
V
D
R
V
A
L
V
H
P
T
F
D
N
I
-------
A
D
L
--
L
R
G
N
G
L
----
D
L
V
P
V
E
E
D
A
L
H
G
A
D
L
S
A
E
L
L
S
S
V
G
C
V
F
V
T
T
P
N
N
P
T
G
R
VL
A
E
E
R
L
R
R
L
A
E
Q
C
A
E
H
G
-----
T
V
L
A
L
D
T
S
F
R
G
F
D
A
--
A
A
HYD
H
Y
A
V
----------------------
L
Q
E
A
G
C
R
W
V
V
I
---
E
D
T
G
K
L
W
P
-------
T
L
D
L
K
--
A
G
L
L
V
F
S
E
D
I
G
L
--
P
-
V
E
K
I
Y
S
D
I
L
L
G
V
S
P
L
I
L
A
L
I
R
E
F
S
R
D
A
A
D
G
G
L
A
D
L
H
A
-----------
F
I
L
H
N
R
S
V
V
R
R
A
L
A
G
V
E
G
V
S
F
P
D
P
E
S
R
S
S
V
E
R
V
A
F
A
G
R
---
T
G
T
E
V
W
E
E
L
Q
R
H
H
V
F
A
L
P
CRQFHWAEPSDGDH
M
V
R
I
A
LSRS
T
E
P
L
E
K
S
V
Q
V
L
R
T
V
L------------------
2
PsiBlast_PDB
42.67
25%
-20
- C6 -
4DTA
1
?
A:
[17-101]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
----------------------
T
Y
Q
M
S
-
F
A
G
M
T
---
K
I
K
G
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.52
27%
-38
- C6 -
3N4T
-
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
42.14
9%
-70
- C2 -
4A0T
2
FIBER_BPT7
A:
[44-227]
--------------------------------------------
M
G
H
V
L
Q
L
E
S
A
S
D
K
A
H
Y
I
L
S
K
D
G
N
-----------------------------------------
R
N
N
W
Y
I
G
R
G
S
D
N
N
-
N
D
-------
C
T
F
--
H
S
Y
V
H
G
----
T
T
L
T
L
K
Q
D
Y
A
V
V
N
K
H
F
H
V
G
Q
A
V
V
A
T
D
G
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I
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G
T
K
W
G
G
K
--
W
L
D
A
Y
L
R
D
S
F
V
A
K
S
K
A
-----
W
T
Q
V
W
S
G
S
A
G
G
G
V
S
--
V
T
---
V
S
Q
D
----------------------
L
R
F
R
N
I
W
I
K
C
A
---
N
N
S
W
N
F
F
R
-------
T
G
P
D
G
--
I
Y
F
I
A
S
D
G
G
W
L
R
--
F
-
Q
I
H
S
N
-
G
L
G
F
K
N
I
A
D
S
R
------------------------------------------
S
V
P
N
A
I
M
V
E
N
E
---------------------------------------------------------------------------------------------
22
Fugue
41.60
9%
-17
- C4 -
1FNN
2
?
A:
[2-389]
----------AIVVDDSVFSPSYVPKRLPHR
E
Q
Q
L
Q
Q
L
D
I
L
L
G
N
W
L
R
N
P
G
H
H
Y
P
R
A
T
L
L
G
R
P
G
T
G
K
T
V
T
-------------------
L
R
K
L
W
E
L
-------
Y
K
DK
T
T
A
R
F
V
Y
I
N
G
F
I
Y
R
N
F
T
A
-------
I
I
G
--
E
I
A
R
S
L
N
I
P
F
P
R
R
G
L
S
R
D
E
F
L
A
L
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H
L
R
E
R
D
L
Y
M
F
L
V
L
D
D
A
F
N
L
A
P
--
D
I
L
S
T
F
I
R
L
G
Q
E
A
D
K
L
GAFR
I
A
L
V
I
V
G
H
N
D
A
V
L
N
N
LD
P
S
---
T
R
G
I
----------------------
M
G
K
Y
V
I
R
F
S
-
P
---
Y
T
K
D
Q
I
F
D
-------
I
L
L
D
R
--
A
K
A
G
L
A
E
G
S
Y
S
E
D
I
L
-
Q
M
I
A
D
I
T
G
A
Q
T
P
L
D
T
N
R
G
D
A
R
L
A
I
D
I
L
Y
--
R
S
A
Y
A
A
Q
Q
N
GRKHIA
P
E
-
D
V
R
K
S
S
K
E
V
L
F
G
I
S
E
E
V
L
I
G
L
P
L
H
E
K
L
F
L
L
A
I
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R
S
L
K
I
S
HT
P
Y
I
T
F
G
D
A
E
E
S
Y
K
I
V
C
E
E
Y
G
E
R
P
R
V
H
S
Q
L
W
S
Y
L
N
D
L
R
E
K
GI
V
E
T
R
Q
NT
T
L
I
S
IGTEP
L
D
T
L
E
A
V
I
T
K
L
I
K
E
E
L
R
11
PsiBlast_PDB
41.39
27%
-40
- C6 -
4DTB
1
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.38
27%
-43
- C6 -
3N4U
-
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
41.05
27%
-39
- C6 -
4DT8
2
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
41.03
27%
-34
- C6 -
3SGC
-
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.99
27%
-44
- C6 -
3SG9
1
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
39.41
27%
-32
- C6 -
4DT9
1
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
38.79
40%
-153
- C6 -
2G9P
-
A:
[3-17]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
K
L
I
K
K
F
G
R
K
A
I
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.68
27%
-37
- C6 -
3SG8
1
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
35.71
27%
-32
- C- -
3N4V
-
?
A:
[17-86]
---------------------------------------------------------------------------------------------------------------------------------------------
Y
----
P
D
F
T
I
N
T
I
E
I
S
G
E
G
N
D
C
I
A
Y
E
I
N
R
D
F
I
F
K
F
P
K
H
S
R
G
S
--
T
N
L
F
N
E
V
N
I
L
K
R
I
H
N
K
-----
L
P
L
P
I
----
P
E
V
V
F
--
T
G
---
M
P
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
34.19
10%
-106
- C3 -
4WFW
-
GSPB_DICD3
A:
[117-186]
--------------------------------------------------------------------------------------------------------------------------
T
G
-------
W
Q
T
--
A
K
P
G
E
L
----
P
Y
I
A
F
S
A
H
V
Y
T
S
A
P
--------
D
K
R
S
V
T
L
N
G
E
R
Y
R
E
G
--
D
S
P
Y
Q
G
L
V
I
E
Q
I
E
Q
D
M
-----
V
I
F
S
F
N
G
E
P
F
I
L
D
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
31.16
12%
-174
- C6 -
2O60
-
B:
[4-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
G
F
K
K
L
A
E
A
V
K
--
F
S
A
K
---------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
30.41
25%
-327
- C6 -
4XTR
-
?
G:
[15-29]
---------------------------------------------------------------
R
W
R
V
Y
L
-------------------
L
I
V
L
L
V
M
-------
L
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------