@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25580: (2016-07-10 )
MERISWNQYFMAQSHLLALRSTCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEGCLMIDDHCARTIHAEMNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTVYYAEDYKTHPYAQELFEQAGVTVEQVELDEMIVDLKNREKLSFVAGLIGKLADAGLAEEELKKIHEQANTLFTSYV
Atome Classification :
(20 SA)
.........10........20--..---.......30..-......40-........50....----....60------.------------------...----------------...--..70........80........90.......------.100----.........110.....---..-120-.----.-----.....130.......--140.......150.......160.......170.......180.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MERIS
W
N
Q
Y
F
M
A
Q
S
H
L
L
A
L
R
---ST---CPRLSV
G
A
T
I
V
-RD
K
R
M
I
AG-GYNGSIAG
G
V
H
CAD----E
G
C
L
M
-------
I
------------------
D
D
H----------------
C
A
R
--
T
I
H
A
E
M
N
A
I
L
Q
C
S
KFGVPTDG
A
E
I
Y
V
T
H
Y
P
C
------
I
Q
------
C
C
K
S
I
I
Q
AGI
K
T
V
Y
Y
AE---DY-KT
H
-
P
----
Y
-----
A
Q
E
L
F
E
Q
AG
V
T
V
E
Q
V
--
E
L
D
E
M
I
V
D
L
KNR
E
K
L
S
F
V
A
G
L
I
G
K
LADAGL
A
E
E
E
L
K
K
I
H
E
Q
A
N
T
L
F
TSYV-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
95
HHSearch
95.26
48%
-143
- C5 -
2HVW
5
?
A:
[37-180]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
H
--
D
V
P
R
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
Fugue
93.39
46%
-145
- C5 -
2HVW
5
?
A:
[37-183]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
E
V
E
Y
V
Q
H
--
D
V
P
R
V
K
L
G
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
92.04
49%
-140
- C5 -
2HVW
5
?
A:
[37-181]
-
N
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
--
E
V
E
Y
V
--
Q
H
D
V
P
R
V
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
90.46
49%
-138
- C5 -
2HVW
6
?
C:
[38-181]
--
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
--
E
V
E
Y
V
--
Q
H
D
V
P
R
V
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
89.97
49%
-136
- C5 -
2HVW
8
?
B:
[38-181]
--
R
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
--
E
V
E
Y
V
--
Q
H
D
V
P
R
V
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
87.64
49%
-120
- C5 -
2HVV
9
?
A:
[39-181]
---
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
--
E
V
E
Y
V
--
Q
H
D
V
P
R
V
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
86.82
49%
-130
- C5 -
2HVV
8
?
B:
[39-181]
---
L
S
W
Q
D
Y
F
M
A
N
A
E
L
I
S
K
R
---
S
T
---
C
N
R
A
Y
V
G
A
V
L
V
-
K
N
N
R
I
I
A
T
-
G
Y
N
G
G
V
A
D
T
D
N
C
D
D
----
V
G
H
E
M
-------
E
------------------
D
G
H
----------------
C
I
R
--
T
V
H
A
E
M
N
A
L
I
Q
C
A
K
E
G
I
S
A
N
N
T
E
I
Y
V
T
H
F
P
C
------
I
N
------
C
T
K
A
L
L
Q
A
G
V
K
K
I
T
Y
N
T
---
A
Y
-
R
I
H
-
P
----
F
-----
A
I
E
L
M
T
Q
K
--
E
V
E
Y
V
--
Q
H
D
V
P
R
V
K
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
96
HHSearch
81.27
37%
-39
- C5 -
1VQ2
3
DCTD_BPT4
A:
[1-177]
----
M
K
A
S
T
V
L
Q
I
A
Y
L
V
S
Q
E
---
S
K
---
C
C
S
W
K
V
G
A
V
I
E
-
K
N
G
R
I
I
S
T
-
G
Y
N
G
S
P
A
G
G
V
N
C
C
D
----
Y
A
A
E
Q
-------
G
WLLNKRFVLAKEH
R
S
A
H
S
E
W
S
----------------
S
K
N
--
E
I
H
A
E
L
N
A
I
L
F
A
A
E
N
G
S
S
I
E
G
A
T
M
Y
V
T
L
S
P
C
------
P
D
------
C
A
K
A
I
A
Q
S
G
I
K
K
L
V
Y
C
E
---
T
Y
-
D
K
N
K
P
----
G
-----
W
D
D
I
L
R
N
A
G
I
E
V
F
N
V
--
P
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
PsiBlast_CBE
79.73
36%
-30
- C5 -
2W4L
2
DCTD_HUMAN
E:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
S
D
----
D
V
L
P
W
RRTAENK
L
------------------
D
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
K
N
L
T
D
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
77.37
36%
-41
- C5 -
2W4L
4
DCTD_HUMAN
A:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
S
D
----
D
V
L
P
W
RRTAENK
L
------------------
D
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
----
D
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
PsiBlast_CBE
76.28
36%
-22
- C5 -
2W4L
3
DCTD_HUMAN
B:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
S
D
----
D
V
L
P
W
RRTAENK
L
------------------
D
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
K
---
D
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
PsiBlast_CBE
76.12
36%
-53
- C5 -
2W4L
1
DCTD_HUMAN
D:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
-------
V
L
P
W
R
R
T
A
E
N
K--------------------
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
K
----
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
76.08
36%
-82
- C5 -
2W4L
1
DCTD_HUMAN
C:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
S
D
----
D
V
L
P
-----------------------------------------------
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
K
----
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
PsiBlast_CBE
75.87
36%
-45
- C5 -
2W4L
2
DCTD_HUMAN
F:
[10-163]
---
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
-
N
S
E
N
K
I
V
G
I
G
Y
N
G
M
P
N
G
---
C
S
D
----
D
V
L
P
W
RRTAENK
L
------------------
D
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
--
N
----
D
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
--
K
Y
H
-
D
----
S
D
E
A
T
A
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
I
P
K
C
S
K
I
V
I
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
110
HHSearch
73.86
31%
-28
- C5 -
2HXV
4
?
A:
[12-154]
----
H
M
Y
E
T
F
M
K
R
A
I
E
L
A
K
K
---
G
L
GRV
N
P
N
P
P
V
G
A
V
V
V
-
K
D
G
R
I
I
A
E
-
G
F
H
P
Y
F
----------------------------------------------------------------
G
--
G
P
H
A
E
R
M
A
I
E
S
A
R
K
K
G
E
D
L
R
G
A
T
L
I
V
T
L
E
P
C
DHHGKT
P
P
------
C
T
D
L
I
I
E
S
G
I
K
T
V
V
I
G
T
---
R
D
-
P
N
P
-
V
SG--
N
-----
G
V
E
K
F
R
N
H
G
I
E
V
I
E
----------
G
V
L
E
E
E
V
K
K
L
C
E
F
F
I
T
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
97
HHSearch
73.55
34%
-82
- C5 -
2W4L
4
DCTD_HUMAN
A:
[8-166]
-
D
Y
L
E
W
P
E
Y
F
M
A
V
A
F
L
S
A
Q
R
---
S
K
---
D
P
N
S
Q
V
G
A
C
I
V
N
S
E
N
K
I
V
G
I
-
G
Y
N
G
M
P
N
G
C
S
D
D
V
L
----
P
W
R
R
T
-------
A
ENKL--------------
D
T
K
----------------
Y
P
Y
--
V
C
H
A
E
L
N
A
I
M
N
------
D
V
K
G
C
S
M
Y
V
A
L
F
P
C
------
N
E
------
C
A
K
L
I
I
Q
A
G
I
K
E
V
I
F
M
S
---
D
K
-
Y
H
D
-
S
D
E
A
T
A
-----
A
R
L
L
F
N
M
A
G
V
T
F
R
K
F
--
I
P
----------
K
C
S
K
I
V
I
D
F
D
S
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
71.96
32%
-19
- C5 -
1VQ2
3
DCTD_BPT4
A:
[10-184]
-------------
A
Y
L
V
S
Q
E
---
S
K
---
C
C
S
W
K
V
G
A
V
I
E
-
K
N
G
R
I
I
S
T
-
G
Y
N
G
S
P
A
G
G
V
N
C
C
D
Y
A
A
E
Q
G
W
L
L
NK---------------------------RFVLAKEH
R
S
A
H
S
E
W
S
S
K
N
--
E
I
H
A
E
L
N
A
I
L
F
A
A
E
N
G
S
S
I
E
G
A
T
M
Y
V
T
L
S
P
C
------
P
D
------
C
A
K
A
I
A
Q
S
G
I
K
K
L
V
Y
C
E
---
T
Y
D
K
N
K
-
P
----
G
-----
W
D
D
I
L
R
N
A
G
I
E
V
---------
F
N
V
P
K
K
N
L
N
K
L
N
W
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
86
Fugue
71.62
26%
-41
- C5 -
2B3Z
1
RIBD_BACSU
A:
[13-371]
-----
M
E
E
Y
Y
M
K
L
A
L
D
L
A
K
Q
G
EG
Q
T
---
E
S
N
P
L
V
G
A
V
V
V
-
K
D
G
Q
I
V
G
M
-
G
A
H
L
K
----------------------------------------------------------------
Y
G
--
E
A
H
A
E
V
H
A
I
H
M
A
---
G
A
H
A
E
G
A
D
I
Y
V
T
L
E
P
C
------
S
H
YGKTPP
C
A
E
L
I
I
N
S
G
I
K
R
V
F
V
A
M
RDP
N
P
-
L
V
A
-
G
----
R
-----
G
I
S
M
M
K
E
A
G
I
E
V
R
E
G
--
I
L
A
D
Q
A
E
R
L
N
E
K
F
L
H
F
M
R
T
G
L
P
Y
V
T
L
K
A
A
A
S
L
D
G
K
I
A
T
S
T
G
D
S
K
W
I
T
S
E
A
A
R
Q
D
A
Q
Q
Y
R
K
T
H
Q
S
I
L
V
G
V
G
T
V
K
A
DNPSLTCRLPNVTKQ
P
V
R
V
I
L
D
TVLSIPEDAKVICDQI
A
P
T
W
I
F
T
T
ARAD
E
E
K
K
K
R
L
S
A
F
G
V
N
I
F
T
L
ETERIQ
I
P
D
V
L
K
I
L
A
E
E
GIMSVYVEGG
S
A
V
H
G
S
F
V
K
E
GCFQ
E
I
I
F
Y
F
A
P
K
L
I
G
G
THAPSL
I
S
G
EGFQSMKD
V
P
L
L
Q
FT
D
I
T
Q
I
GR
D
I
K
L
T
A
K
P
T
38
PsiBlast_CBE
70.84
34%
-30
- C5 -
4P9C
3
?
C:
[12-138]
---------
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
M
K
V
G
A
I
V
V
-
K
N
G
S
I
L
A
H
-
G
W
N
G
T
P
S
G
----
F
H
----
T
N
C
C
E
-------
L
------------------
E
D
G
----------------
S
T
N
PF
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
S
E
L
F
C
T
H
S
P
C
------
P
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
---
E
Y
-
R
I
T
-
D
----------
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
70.59
34%
-33
- C5 -
4P9D
7
?
A:
[12-138]
---------
Y
M
K
T
A
E
L
F
S
Q
V
---
S
N
---
C
K
R
M
K
V
G
A
I
V
V
-
K
N
G
S
I
L
A
H
-
G
W
N
G
T
P
S
G
----
F
H
----
T
N
C
C
E
-------
L
------------------
E
D
G
----------------
S
T
N
PF
V
L
H
A
E
Q
N
A
L
V
K
M
A
K
S
S
E
S
I
D
G
S
E
L
F
C
T
H
S
P
C
------
P
D
------
C
S
K
M
I
A
Q
A
G
V
K
K
V
Y
Y
R
N
---
E
Y
-
R
I
T
-
D
----------
G
I
D
V
L
Q
Q
L
G
V
E
V
E
K
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------