@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25630: (2016-07-10 )
MNREEALACVKQQLTEHRYIHTVGVMNTAIELAERFGADSKKAEIAAIFHDYAKFRPKEEMKQIIAREKMPAHLLDHNPELWHAPVGAYLVQREAGVQDEDILDAIRYHTSGRPGMTLLEKVIYVADYIEPNRAFPGVDEVRKLAETDLNQALIQSIKNTMVFLMKKNQPVFPDTFLTYNWLVSGS
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------.........10--...----..-...20........30......----.-.40........50...-.----....60.....-------.------..---70.----.-.-...-...80----........90...---------.-.-...---100--.........110.--.-----.--------------------------....120-....-----...130.....----..140....---...150.......160.......170.......180....---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------M
N
R
E
E
A
L
A
C
V
K
--
Q
Q
L
----
T
E-H
R
Y
I
H
T
V
G
V
M
N
T
A
I
E
L
A
E
R
FG----A-DS
K
K
A
E
I
A
A
I
F
H
D
Y
A
K-F----R
P
K
E
E
M
K
Q
I
I
A
-------
R
------EK---M-
P
----
A
-
H
-
L
LD-HNPEL----WHAP
V
G
A
Y
L
V
Q
RE---------A-G-V
Q
D
---
E
----
D
I
L
D
A
I
R
Y
HTSGR--P-----
G
--------------------------
M
T
L
L
E
K
V
-
I
Y
V
A
-----DYIEPNRAFP
G
----
V
D
E
V
R
K
L
A
E
---
T
D
L
N
Q
A
L
I
Q
S
I
K
N
T
M
V
F
L
M
KKNQPVFPD
T
F
L
T
Y
N
W
L
V
SGS---------------------------
1
PsiBlast_PDB
90.79
60%
-65
- C2 -
2O08
9
?
A:
[3-184]
---------------------------------------------------------------------------------------------------------------------------------
N
R
G
K
A
L
Q
L
V
K
--
P
H
L
----
T
E
-
H
R
Y
Q
H
T
I
G
V
M
E
T
A
I
D
L
A
K
L
Y
G
----
A
-
D
Q
Q
K
A
E
L
A
A
I
F
H
D
Y
A
K
-
F
----
R
D
K
N
E
M
R
T
L
I
--------
R
------
E
K
---
L
-
S
----
Q
-
Q
D
I
L
F
-
Y
G
D
E
L
----
L
H
A
P
C
G
A
Y
Y
V
R
E
E
---------
V
-
G
-
I
E
D
---
E
----
D
V
L
Q
A
I
R
F
H
T
T
G
R
--
P
-----
N
--------------------------
M
S
L
L
E
K
I
-
I
F
L
A
-----
D
Y
I
E
P
N
R
Q
F
P
G
----
V
E
K
V
R
T
Q
A
K
---
T
D
L
N
G
A
I
I
S
S
L
V
N
T
I
T
F
L
L
K
K
N
Q
P
I
Y
P
D
T
L
A
T
Y
N
Q
L
L
------------------------------
25
HHSearch
88.58
61%
-33
- C2 -
2O08
9
?
A:
[2-186]
--------------------------------------------------------------------------------------------------------------------------------
M
N
R
G
K
A
L
Q
L
V
K
--
P
H
L
----
T
E
-
H
R
Y
Q
H
T
I
G
V
M
E
T
A
I
D
L
A
K
L
Y
G
----
A
-
D
Q
Q
K
A
E
L
A
A
I
F
H
D
Y
A
K
-
F
----
R
D
K
N
E
M
R
T
L
I
R
-------
E
-------
K
---
L
-
S
Q---
Q
-
D
-
I
L
F
-
Y
G
D
E
L
----
L
H
A
P
C
G
A
Y
Y
V
R
E
E
---------
V
-
G
-
I
-
E
---
D
E
---
D
V
L
Q
A
I
R
F
H
T
T
G
R
--
P
-----
N
--------------------------
M
S
L
L
E
K
I
-
I
F
L
A
-----
D
Y
I
E
P
N
R
Q
F
P
G
----
V
E
K
V
R
T
Q
A
K
---
T
D
L
N
G
A
I
I
S
S
L
V
N
T
I
T
F
L
L
K
K
N
Q
P
I
Y
P
D
T
L
A
T
Y
N
Q
L
L
L
E
----------------------------
2
PsiBlast_PDB
86.51
43%
-108
- C2 -
2OGI
6
?
A:
[10-189]
--------------------------------------------------------------------------------------------------------------------------------
L
D
R
T
E
L
L
S
K
V
R
--
H
M
M
----
S
D
-
K
R
F
N
H
V
L
G
V
E
R
A
A
I
E
L
A
E
R
Y
G
----
Y
-
D
K
E
K
A
G
L
A
A
L
L
H
D
Y
A
K
-
E
----
L
S
D
D
E
F
L
R
L
I
D
-------
K
------
Y
Q
---
P
-
D
----
P
-
D
-
L
K
K
-
W
G
N
N
I
----
W
H
G
L
V
G
I
Y
K
I
Q
E
D
---------
L
-
A
-
I
K
D
---
Q
----
D
I
L
A
A
I
A
K
H
T
V
G
S
--
A
-----
Q
--------------------------
M
S
T
L
D
K
I
-
V
Y
V
A
-----
D
Y
I
E
H
N
R
D
F
P
G
----
V
E
E
A
R
E
L
A
K
---
V
D
L
N
K
A
V
A
Y
E
T
A
R
T
V
A
F
L
A
S
K
A
Q
P
I
Y
P
K
T
I
E
T
Y
N
---------------------------------
24
HHSearch
85.67
43%
-108
- C2 -
2OGI
6
?
A:
[11-193]
---------------------------------------------------------------------------------------------------------------------------------
D
R
T
E
L
L
S
K
V
R
--
H
M
M
----
S
D
-
K
R
F
N
H
V
L
G
V
E
R
A
A
I
E
L
A
E
R
Y
G
----
Y
-
D
K
E
K
A
G
L
A
A
L
L
H
D
Y
A
K
-
E
----
L
S
D
D
E
F
L
R
L
I
D
-------
K
------
Y
Q
---
P
-
D
----
P
-
D
-
L
K
K
-
W
G
N
N
I
----
W
H
G
L
V
G
I
Y
K
I
Q
E
D
---------
L
-
A
-
I
K
D
---
Q
----
D
I
L
A
A
I
A
K
H
T
V
G
S
--
A
-----
Q
--------------------------
M
S
T
L
D
K
I
-
V
Y
V
A
-----
D
Y
I
E
H
N
R
D
F
P
G
----
V
E
E
A
R
E
L
A
K
---
V
D
L
N
K
A
V
A
Y
E
T
A
R
T
V
A
F
L
A
S
K
A
Q
P
I
Y
P
K
T
I
E
T
Y
N
A
Y
I
P
-----------------------------
23
HHSearch
78.76
42%
-18
- C2 -
3CCG
3
?
A:
[3-189]
--------------------------------------------------------------------------------------------------------------------------------
W
S
Y
D
K
I
T
D
Y
L
M
--
N
N
L
----
G
E
-
K
R
Y
K
H
S
L
G
V
M
D
T
A
V
R
L
A
G
I
Y
N
----
E
-
D
T
E
K
A
R
I
A
G
L
V
H
D
C
A
K
-
K
----
L
P
G
E
K
I
I
E
I
C
T
-------
N
------
E
G
---
Y
-
E
L
---
G
-
D
-
E
D
I
-
R
N
S
Y
L
----
L
H
G
L
A
G
R
I
L
A
-
K
K
---------
V
I
G
-
I
D
D
---
E
----
D
V
L
N
A
I
E
F
H
T
T
G
R
--
P
-----
N
--------------------------
M
S
L
L
E
K
I
-
I
Y
I
A
-----
D
Y
I
E
P
G
R
E
F
K
G
----
V
D
E
L
R
K
A
A
D
---
E
D
L
N
K
A
L
L
M
S
F
D
N
T
I
K
F
V
I
D
K
G
G
F
L
H
H
N
T
I
E
A
R
N
Y
L
I
S
R
K
---------------------------
3
PsiBlast_PDB
76.73
43%
-32
- C2 -
3CCG
3
?
A:
[12-187]
-----------------------------------------------------------------------------------------------------------------------------------------
L
M
--
N
N
L
----
G
E
-
K
R
Y
K
H
S
L
G
V
M
D
T
A
V
R
L
A
G
I
Y
N
----
E
-
D
T
E
K
A
R
I
A
G
L
V
H
D
C
A
K
-
K
----
L
P
G
E
K
I
I
E
I
C
T
-------
N
------
E
G
---
Y
-
E
----
L
-
G
-
D
E
D
I
R
N
S
Y
L
----
L
H
G
L
A
G
R
I
L
A
K
K
V
---------
I
-
G
-
I
D
D
---
E
----
D
V
L
N
A
I
E
F
H
T
T
G
R
--
P
-----
N
--------------------------
M
S
L
L
E
K
I
-
I
Y
I
A
-----
D
Y
I
E
P
G
R
E
F
K
G
----
V
D
E
L
R
K
A
A
D
---
E
D
L
N
K
A
L
L
M
S
F
D
N
T
I
K
F
V
I
D
K
G
G
F
L
H
H
N
T
I
E
A
R
N
Y
L
I
S
-----------------------------
55
Fugue
45.14
16%
6
- C2 -
3HC1
8
?
A:
[8-305]
-----------------------------D
V
E
T
R
L
T
L
A
R
E
F
M
S
G
VD
E
L
P
T
V
P
D
I
V
L
R
I
A
G
K
LNDPDVA
I
D
E
V
A
D
L
L
L
QD
Q
V
L
T
A
R
V
V
H
L
A
N
SPLYSAARPISS
I
R
D
A
V
I
Y
L
G
L
D
L
L
R
E
A
I
F
T
C
A
I
VDL
F
K
T
G
K
-----
G
--
P
L
N
----
R
S
-
T
L
W
A
H
S
L
G
V
A
R
I
A
K
L
I
A
E
R
T
G
F---
L
-
N
P
V
N
V
Y
V
A
G
L
L
H
D
V
G
E
-
V
F
I
N
F
F
R
G
K
E
F
S
Q
V
V
T
-------
L
------
V
D
---
E
-
E
KIT
F
G
-
Q
-
A
E
E
-
R
L
F
G
T
----
S
H
C
E
V
G
F
A
L
A
K
R
W
---------
S
----
L
N
---
E
----
F
I
C
D
T
I
L
Y
H
H
D
I
E
AV
P
-----
Y
--------------------------
K
Q
A
A
I
V
A
M
V
A
F
A
-----
D
E
Y
C
T
L
R
R
L
G
F
----
E
G
H
--
K
P
V
D
---
S
V
R
T
L
L
E
N
H
P
S
W
G
V
I
R
R
S
L
G
G
S
D
F
D
E
K
L
I
V
A
E
L
D
S
S
I
V
E
I
R
A
A
V
D
E
LFLL-----------------
4
PsiBlast_PDB
42.34
30%
-8
- C2 -
3DTO
-
?
A:
[8-129]
-----------------------------------------------------------------------------------------------------------------------------------
Q
S
A
E
A
W
V
K
--
K
Q
L
----
M
D
E-
D
W
Y
H
I
R
R
V
T
L
M
A
K
A
I
G
E
Q
E
K
----
V
-
D
V
F
V
V
Q
I
A
A
L
F
H
D
L
I
D
--------
E
T
A
K
Q
Q
L
I
D
-------
W
------
M
E
A
A
G
V
-
P
----
S
-
Q
-
K
I
D
-
H
T
M
D
I
INTI---------
A
T
R
E
---------
A
-
M
V
V
Q
D
---
A
----
D
R
L
D
A
L
---------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
42.33
16%
-27
- C2 -
3M1T
1
?
A:
[103-227]
----------------------------------------------------------------------------------------------------------------------------------------------------
L
A
-
D
F
W
G
N
T
F
E
V
A
I
I
C
Q
E
L
A
K
R
L
G
----
T
-
L
P
E
E
A
F
T
C
G
I
L
H
S
I
G
E
-
L
----
L
I
V
N
G
D
P
A
V
A
A
-------
T
I
S
A
A
V
A
D
G
---
A
-
D
R
---
N
-
L
-
M
E
K
-
E
L
L
G
Y
----
D
N
A
E
I
G
A
L
L
A
-
Q
S
---------
W
-
K
-
F
-
T
---
P
----
H
L
V
K
G
I
Q
F
Q
N
H
P
K
--
S
-----
A
EP------------------------
Y
S
K
L
A
G
M
-
L
A
M
A
-----
K
Q
I
A
A
D
----------------------------------------------------------------------------------------
22
PsiBlast_CBE
41.14
35%
-92
- C2 -
4S1B
3
?
D:
[19-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
----
A
-
N
S
L
L
V
R
V
G
C
F
Y
H
D
I
G
K
T
L
----
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
40.87
18%
-36
- C2 -
2DQB
1
?
A:
[73-200]
----------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
-
T
R
L
T
H
T
L
E
V
A
Q
V
S
R
S
I
A
R
A
L
G
----
L
-
N
E
D
L
T
E
A
I
A
L
S
H
D
L
G
H
-
P
----
P
F
G
H
T
G
E
H
V
L
N
----------------------------
A
-
L
M
Q
-
D
H
G
G
F
----
E
H
N
A
Q
A
L
R
I
L
T
H
L
EVRYPGFRG
L
-
N
-
L
-
T
---
Y
----
E
V
L
E
G
I
A
T
H
E
A
-----G----
Q
--------------------------
G
T
L
E
A
Q
V
-
V
D
L
S
-----
D
A
I
A
Y
-----------------------------------------------------------------------------------------
43
HHSearch
40.68
20%
-47
- C2 -
2PJQ
-
?
A:
[22-127]
-----------------------------------------------------------------------------------------------------------------------------------------------
H
----
S
G
-
H
G
R
D
H
L
Q
R
V
N
R
L
A
R
R
L
A
K
D
E
G
----
A
-
N
L
N
L
T
L
A
A
A
W
L
H
D
V
I
D
------------------------------------------------------------
A
H
Q
-
D
L
I
V
Q
L
-
N
A
---------
Q
-
N
-
V
T
A
D
D
Q
T
----
A
I
F
A
I
I
D
H
M
S
F
S
K
--
S
FN
G
P
Q
K
--------------------------
L
S
L
E
G
Q
V
-
V
Q
D
A
-----
D
R
L
D
A
-----------------------------------------------------------------------------------------
20
PsiBlast_PDB
40.50
35%
-104
- C2 -
4S1C
2
?
D:
[19-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
----
A
-
N
S
L
L
V
R
V
G
C
F
Y
H
D
I
G
K
T
L
----
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
HHSearch
40.41
18%
-5
- C2 -
2QGS
1
?
A:
[8-126]
-----------------------------------------------------------------------------------------------------------------------------------
K
K
A
Y
E
Y
M
K
--
S
F
H
QHDT
T
G
-
H
D
I
A
H
V
E
R
V
Y
N
N
A
C
Y
I
A
K
R
E
N
I---
T
-
D
T
L
V
I
E
L
S
S
L
L
H
D
T
V
D
-
S
----
K
L
T
D
--------------------------------------------
E
I
----
L
A
Y
D
Q
L
K
Q
F
L
-
S
T
---------
L
-
D
-
L
-
S
---
S
E
I
S
Q
Q
V
L
Y
I
I
K
H
M
S
------H
V
---
K
--------------------------
L
S
I
D
G
E
I
-
V
R
D
A
-----
D
R
L
D
------------------------------------------------------------------------------------------
51
Fugue
40.28
20%
42
- C2 -
3TM8
5
?
A:
[20-328]
H
M
D
Y
V
S
I
R
VSTLRGDQKID
F
N
A
Y
V
K
I
ND
K
M
I
L
Y
L
RRG
D
S
F
E
G
ERLKRLKDKKLR
K
M
Y
I
LTDE
E
N
S
Y
R
T
Y
L
Q
K
N
I
E
T
A
Y
DDTTGKD
I
Q
T
R
A
D
I
I
Q
G
S
Q
Q
N
N
A
E
E
V
F
E
N
PEN
V
E
S
Y
N
Y
C
K
D
A
A
G
K
Y
V
N
F
I
M
S
N
A
Q
A
L
S
A
V
M
N
I
E
N
T
----
D
K
-
T
I
S
H
H
G
V
T
V
S
T
L
S
I
A
L
A
Q
K
L
G
ITD
P
K
-
K
T
Q
L
L
T
L
G
A
L
L
H
D
Y
G
H
-
H
----
H
S
P
L
N
----
L
N
-------
Q
------
P
L
---
D
-
S
----
M
-
S
-
P
E
D
-
L
A
L
W
K
----
K
H
P
I
E
G
A
Q
K
V
Q
D
K
---------
K
-
H
-
F
-
D
---
Q
----
T
V
I
N
I
I
G
Q
H
E
E
T
I
--
N
-----
G
TGPKGLREKDMD
P
-------------
L
A
V
L
V
S
S
-
A
N
A
M
-----
D
R
L
I
T
F
E
G
V
P
K
----
A
E
A
A
K
K
L
M
I
DHV
G
K
H
P
L
Q
H
I
Q
H
L
N
D
I
L
K
G
L
-------------------------------------------------
40
HHSearch
39.53
19%
-136
- C2 -
4MLM
5
?
A:
[29-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------
I
-
N
Q
L
E
H
S
L
Q
C
A
Y
F
A
Q
R
S
G
A
----------
D
N
E
M
V
L
A
A
L
L
H
D
L
G
H
-
Y
----
C
N
D
T
S
F
E
D
M
G
-----------------------------------
G
Y
G
V
W
----
Q
H
E
K
V
G
A
D
Y
L
-
R
G
---------
L
-
G
-
F
-
S
---
E
----
R
V
A
C
L
I
E
G
H
V
A
A
K
--
R
-----------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
39.34
22%
-3
* C2 *
3HC1
4
?
A:
[117-242]
-----------------------------------------------------------------------------------------------------------------------------------------------------
S
-
T
L
W
A
H
S
L
G
V
A
R
I
A
K
L
I
A
E
R
T
G
----
F
L
N
P
V
N
V
Y
V
A
G
L
L
H
D
V
G
E
-
V
----
F
I
N
F
F
R
G
K
E
F
S
Q
V
V
T
L
V
D
E
------
E
K
---
I
-
T
F
---
G
-
Q
-
A
E
E
-
R
L
F
G
T
----
S
H
C
E
V
G
F
A
L
A
-
K
R
---------
W
-
S
-
L
-
N
---
E
----
F
I
C
D
T
I
L
Y
H
H
D
I
E
--
A
VPY--
K
--------------------------
Q
A
A
I
V
A
M
-
V
A
F
A
-----
D
E
Y
C
T
-----------------------------------------------------------------------------------------
21
PsiBlast_CBE
38.84
35%
-99
- C2 -
4S1C
2
?
A:
[19-62]
---------------------------------------------------------------------------------------------------------------------------------------------------------
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
----
A
-
N
S
L
L
V
R
V
G
C
F
Y
H
D
I
G
K
T
L
----
R
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
37.40
21%
-3
- C2 -
4S1B
3
?
A:
[14-159]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
----
A
P
-
G
T
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
----
A
-
N
S
L
L
V
R
V
G
C
F
Y
H
D
I
G
K
-
T
----
L
R
P
P
Y
F
V
E
N
Q
---------------
I
N
P--
H
D
R
----
L
T
P
-
E
Q
S
-
R
D
I
I
L
----
S
H
T
K
D
G
A
E
I
L
-
K
E
---------
N
-
H
-
M
-
P
---
Q
----
P
I
I
D
I
A
L
Q
H
H
G
T
T
--
L
-----
L
K
Y
F
Y
F
K
A
K
ETNPDVKEADYRYSGPKP
Q
T
K
E
I
A
I
-
I
N
I
S
-----
D
S
V
E
A
-----------------------------------------------------------------------------------------
50
Fugue
37.12
19%
-15
- C2 -
4S1B
4
?
A:
[5-220]
-----------------------------------------------------------------------------------------------------------------------------------
H
P
L
L
K
K
I
L
--
M
K
-----
A
P
-
G
T
Y
H
H
S
M
M
V
A
N
L
A
E
A
C
A
D
K
I
G
----
A
-
N
S
L
L
V
R
V
G
C
F
Y
H
D
I
G
K
-
T
L---
R
P
P
Y
F
V
E
N
Q
I
N
-------
P
------
H
D
---
R
-
L
----
T
-
P
-
E
Q
S
-
R
D
I
I
L
----
S
H
T
K
D
G
A
E
I
L
K
E
N
---------
H
----
M
P
---
Q
----
P
I
I
D
I
A
L
Q
H
H
-----------
G
--------------------------
T
T
L
L
K
Y
F
-
Y
F
K
A
K
ETNP
D
V
K
E
A
D
Y
R
Y
S
G
PKPQ
T
K
E
I
A
I
I
N
I
---
S
D
S
V
E
A
A
V
R
S
S
T
E
P
T
M
A
K
I
T
E
I
I
D
G
I
I
K
D
R
F
L
D
G
Q
F
T
E
C
D
IT
I
Q
E
I
K
I
I
R
D
T
L
I
A
T
L
N
G
I
YHQRIQY