@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25770: (2016-07-10 )
MIAIYVRVSTEEQAIKGSSIDSQIEACIKKAGTKDVLKYADEGFSGELLERPALNRLREDASKGLISQVICYDPDRLSRKLMNQLIIDDELRKRNIPLIFVNGEYANSPEGQLFFAMRGAISEFEKAKIKERTSSGRLQKMKKGMIIKDSKLYGYKFVKEKRTLEILEEEAKIIRMIFNYFTDHKSPFFGRVNGIALHLTQMGVKTKKGAKVWHRQVVRQILMNSSYKGEHRQYKYDTEGSYVSKQAGNKSIIKIRPEEEQITVTIPAIVPAEQWDYAQELLGQSKRKHLSISPHNYLLSGLVRCGKCGNTMTGKKRKSHGKDYYVYTCRKNYSGAKDRGCGKEMSENKLNRHVWGEIFKFITNPQKYVSFKEAEQSNHLSDELELIEKEIEKTKKGRKRLLTLISLSDDDDLDIDEIKAQIIELQKKQNQLTEKCNEIQSKMKVLDDTSSSENALKRAIDYFQSIGADNLTLEDKKTIVNFIVKEVTIVDSDTIYIETY
Atome Classification :
(20 SA)
-------------------------------------------------.........10..-......20........30----------.--...----....40-.......-.50-........60....--.----...70........-80.....-....-90.......------.100-.--.---------.--....110....-....120.-----......130.......140..---------------..----------...150.......160-----.---...----------------------..-------------..170......-------.180.......190.......200....--...210....-------...220.......230--.-.--......240........---.250.......260--.......------270.......280.......290...-----....300.........310.---......320--.........330.......340-..-----.....350.....--..360.......370.......380.......390.......400....-...410.--------.....-.420.....-------------..430.......440--........------.450.......460.----------......470.......480------.......490.......500--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------
M
I
A
I
Y
V
R
VST
E
E
Q-AIKGSS
I
D
S
Q
I
E
A
C
I
K
KA----------
G
--
T
K
D
----
V
L
K
Y
AD-EGFS
G
E
L
-
L
E
R
-
P
A
L
N
R
L
R
E
D
A
S
K
G
L
--
I
----
S
Q
VICY
D
P
D
R
L
S
R
-
K
-
L
M
N
Q
L-II
D
D
-
E
L
RKRNI
P
L
------
I
F
VN-G--E---------Y--ANSPE-
G
Q
L
F
F
-
A
M
R
G
A
I
S
E
-----
F
E
K
A
K
I
K
ERTSSG
R
L
Q
K
M
KKG---------------
M
I
----------
I
KDSKLY
G
Y
K
F
V
K
E
K
------
R
---
T
L
E
----------------------
I
L
-------------
E
E
E
A
K
I
I
R
M
I
F
-------
N
Y
F
TDHKSPFFGRVN
G
I
A
L
H
L
TQMGVKT--K
K
G
A
K
V
W
H
R
Q
-------
V
V
R
Q
I
L
MNSSYKGEH---
R
-
Q
--
Y
K
YDTEG--SYVSKQAG---NK
S
I
I
K
IRPEE
E
Q
I
--
T
V
T
IPAI------VP
A
E
Q
W
D
Y
A
Q
E
L
L
G
Q
SKRKHLSIS
P
H
-----
N
Y
L
L
S
--
G
L
V
R
CGKCGNTMT---GKKRKSH----GK
D
Y
Y
V
Y
T
CRKNYSGAKDRGCG-K
E
-----
M
S
E
N
K
L
N
R
H
V
W
G
E
--
I
F
K
F
IT
N
P
Q
K
Y
V
S
F
K
E
AEQSNH
L
S
D
E
L
E
L
I
E
K
E
I
E
K
T
K
K
G
R
K
R
L
L
T
L
I
S-LSDDDDL--------
D
I
D
E
I
-
K
A
Q
I
I
E
L
Q
K
-------------
K
Q
N
Q
L
T
E
K
C
N
E
I
Q
----
S
K
M
K
VLDD------TS
S
S
E
N
A
L
K
R
A
I
D
Y
F
----------
Q
S
IGADNLTL
E
D
K
K
T
I
V
N
F
------
I
V
K
E
V
T
I
VDS
D
T
I
Y
I
ETY----------------------------------------
1
HHSearch
70.88
22%
31
- C- -
4BQQ
-
?
A:
[4-371]
-------------------------------------------------
Y
A
G
A
Y
D
R
Q
S
R
E
R
----
S
A
A
S
P
A
T
Q
R
S
A
N
E
D
K
A
A
D
L
Q
R
E
V
E
R
D
G
G
R
F
R
F
----
V
G
H
F
S
E
A
P
G
------
A
E
R
-
P
E
F
E
R
I
L
N
E
C
R
A
G
R
--
L
----
N
M
I
I
V
Y
D
V
S
R
F
S
R
-
L
K
V
M
D
A
I
-
P
I
V
S
-
E
L
L
A
L
G
V
T
I
------
V
S
T
Q
-
E
G
V
F
---------
R
--
Q
G
N
V
M
-
D
L
I
H
L
-
I
M
R
L
D
A
S
H
-----
K
E
S
S
L
K
S
A
K
I
L
D
T
K
N
L
Q
R
E
L
G
---------------
G
Y
----------
V
G
G
K
A
P
Y
G
F
E
L
V
S
E
T
K
E
I
T
R
N
G
R
M
V
N
V
V
----------------------
I
N
K
L
A
HSTTPLTGPF
E
F
E
P
D
V
I
R
W
W
W
-------
R
E
I
K
T
H
K
---
P
G
S
I
T
G
L
C
K
R
M
D
A
D
A
V
P
T
--
R
G
----
W
D
P
A
-------
T
V
M
R
I
L
R
D
P
R
I
A
G
F
A
A
E
V
I
-
Y
--
K
K
K
P
D
G
T
--
P
T
T
K
I
-------
E
G
Y
R
I
Q
R
D
P
I
T
L
R
PV
E
L
D
C
G
P
I
------
I
E
P
A
E
W
Y
E
L
Q
A
W
L
D
G
R
G
R
G
K
-
G
L
S
R
G
-----
Q
A
I
L
S
A
M
D
K
L
Y
C
-
E
C
G
A
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
67.36
17%
41
* C5 *
4OIF
13
?
A:
[2-686]
PKY
E
R
T
Y
TTQANFILHGGDYNPDQWLDR
P
D
I
L
Q
A
D
L
E
L
M
K
L
S
HTN
T
F
T
V
G
V
F
A
W
S
A
L
E
P
E
E
G
-
V
Y
R
F
E
W
L
D
K
V
F
D
D
-
I
Y
R
I
----------
G
--
G
R
V
----
I
L
A
T
P
S
-
G
A
R
P
A
W
L
-
S
Q
K
Y
P
E
V
L
R
V
N
A
A
R
V
R
Q
L
--
H
GGRH
N
H
C
F
T
S
S
V
Y
R
E
K
T
-
Q
-
H
I
N
R
L
-
L
A
E
R
-
Y
G
D
H
P
A
L
L
M
------
W
H
V
S
-
N
--
E
---------
Y
--
G
G
E
C
H
-
C
N
L
C
Q
E
A
F
R
E
W
L
K
K
K
Y
NHD
L
D
A
L
N
A
A
W
W
T
S
F
W
S
H
T
Y
T
D
W
S
---------------
Q
I
ESPSPIGEHT
I
H
G
L
N
L
D
W
K
R
F
V
T
D
Q
----------
T
I
S
----------------------
F
F
-------------
E
N
E
I
V
P
L
R
E
L
T
PH
I
P
I
T
T
N
F
M
A
D
T
H
D
L
I
P
F
Q
G
L
D
Y
S
K
F
A
K
H
L
D
V
I
S
--
W
D
A
Y
P
A
W
H
N
D
WES
T
A
D
L
A
M
K
V
G
F
I
N
D
L
Y
R
S
L
K
---
Q
-
Q
--
P
F
L
L
M
E
C
T
P
S
L
V
N
W
H
K
V
---
N
K
A
----
K
R
P
G
M
H
F
--
L
S
S
M
Q
M
I
A
H
GSD
S
I
L
Y
F
Q
W
R
K
S
R
---
G
S
F
E
K
F
H
G
A
V
V
D
H
DNRTD
S
R
V
F
Q
--
E
V
A
E
V
G
K
A
L
K
K
M
S
GIV
G
T
N
R
P
A
E
------
V
A
I
L
Y
D
W
E
N
N
W
A
L
N
D
A
Q
G
F
A
-
A
E
TKR
Y
P
Q
T
L
V
Q
H
Y
R
P
F
W
E
R
DI
P
V
D
V
I
T
K
E
H
D
F
S
R
Y
K
L
L
I
A
P
M
L
Y
L
V
S
E
E
T
I
A
R
L
K
E
F
V
A
N
G
G
T
L
V
M
T
Y
I
S
G
I
V
D
E
H
D
L
AYLGGWH
Q
D
L
R
E
M
F
G
M
E
P
I
E
T
D
T
L
Y
PR
D
R
N
S
V
H
Y
RG
R
S
Y
E
L
K
D
Y
A
T
V
I
K
I
H
AA
T
V
E
G
V
Y
E
D
DFYADT
P
A
V
T
S
N
Q
Y
G
K
G
Q
A
Y
Y
I
GGRLE
D
Q
F
H
R
D
F
Y
Q
E
L
M
E
K
L
D
L
R
P
V
L
F
V
K
H
E
K
G
V
S
V
Q
A
R
Q
A
P
E
C
D
Y
V
F
I
M
N
F
TE
E
K
Q
A
V
V
L
E
E
K
V
K
DLFTG
E
E
I
V
G
E
I
M
L
D
KY
E
V
R
V
V
E
K
R
R
33
PsiBlast_PDB
63.61
21%
33
- C- -
4BQQ
-
?
A:
[67-352]
---------------------------------------------------------------------------------------------------------------------
E
R
-
P
E
F
E
R
I
L
N
E
C
R
A
G
R
--
L
----
N
M
I
I
V
Y
D
V
S
R
F
S
R
L
K
-
V
M
D
A
I
-
P
I
V
S
-
E
L
L
A
L
G
V
T
I
V
S
TQ
E
G
V
F
R
Q
-
G
--
N
---------
V
--
M
D
-----
L
I
H
L
-
I
M
R
L
D
A
S
H
-----
K
E
S
S
L
K
S
A
K
I
L
D
T
K
N
L
Q
R
E
L
G
---------------
G
Y
----------
V
G
G
K
A
P
Y
G
F
E
L
V
S
E
T
------
K
---
E
I
T
R
NG
R
M
V
N
V
V
I
N
K
L
A
HSTTPLTG
P
F
-------------
E
F
E
P
D
V
I
R
W
W
W
-------
R
E
I
K
T
H
K
---
P
G
S
I
T
G
L
C
K
R
M
D
A
D
A
V
P
T
RG------
W
D
P
A
-------
T
V
M
R
I
L
R
D
P
R
I
A
G
F
A
---
A
-
E
V
I
Y
K
K
K
P
D
G
--
T
P
T
T
K
I
E
G
Y
R
I
Q
R
D
P
I
T
L
R
P
V
E
L
D
C
--
G
---
P
I
I
------
E
P
A
E
W
Y
E
L
Q
A
W
L
D
G
R
G
R
G
K
G
L
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
Fugue
60.10
19%
3
- C1 -
4KIS
4
?
A:
[2-328]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
M
V
M
G
K
I
K
R
I
E
A
G
---------------
L
P
----------
L
T
T
A
K
G
R
T
F
G
Y
D
V
I
D
------
T
---
K
L
Y
----------------------
I
N
-------------
E
E
E
A
K
Q
L
R
L
I
Y
-------
D
I
F
E
E
E
Q
S
-----
I
T
F
L
Q
K
R
L
K
K
--------
L
G
F
K
V
R
T
Y
N
-------
R
Y
N
N
W
L
T
N
D
L
Y
C
G
Y
V
---
S
Y
K
--
D
K
V
H
V
K
G
--
I
H
-----------------------------
E
P
I
------
I
S
E
E
Q
F
Y
R
V
Q
E
I
F
S
R
M
G
K
N
P
N
M
N
K
E
S
-----
A
S
L
L
N
--
N
L
V
V
C
S
K
C
G
L
G
F
V
---
H
R
R
K
D
T
V
S
RG
K
K
Y
H
Y
R
Y
Y
S
C
K
T
Y
K
H
T
H
E
L
E
K
C
G
N
K
I
-----
W
R
A
D
K
L
E
E
L
I
I
D
R
--
V
N
N
Y
S
F
A
S
------------
R
N
I
D
K
E
D
E
S
L
N
E
K
L
K
I
E
H
A
K
K
K
R
L
F
D
L
Y
I
----
N
G
S
Y
--------
E
V
S
E
L
-
D
S
M
M
N
D
I
D
A
-------------
Q
I
N
Y
Y
E
A
Q
I
E
A
N
E
----
E
L
K
K
N
K
T
V
------
D
----------------------------
F
N
S
L
E
F
R
E
K
Q
L
Y
L
K
S
------
L
I
N
K
I
Y
I
D
G
E
Q
V
T
I
E
W
L
L
EHHHHHH---------------------------------
27
PsiBlast_PDB
59.26
28%
-87
- C3 -
1ZR4
3
TNR1_ECOLI
A:
[6-139]
-----------------------------------------------------
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
-
L
K
D
A
----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
A
-
S
G
S
S
-
S
D
R
-
K
G
L
D
L
L
R
M
K
V
K
E
G
D
--
V
------
I
L
V
K
K
L
D
R
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
D
G
--
I
---------
S
--
T
D
S
Y
I
-
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
Q
R
T
N
E
G
R
Q
E
A
M
A
K
G
---------------
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_PDB
58.15
28%
-86
- C3 -
1ZR2
3
TNR1_ECOLI
A:
[6-139]
-----------------------------------------------------
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
-
L
K
D
A
----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
A
-
S
G
S
S
-
S
D
R
-
K
G
L
D
L
L
R
M
K
V
K
E
G
D
--
V
------
I
L
V
K
K
L
D
R
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
D
G
--
I
---------
S
--
T
D
S
Y
I
-
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
Q
R
T
N
E
G
R
Q
E
A
M
A
K
G
---------------
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
57.82
30%
-68
- C3 -
3UJ3
-
GIN_BPMU
X:
[2-125]
--------------------------------------------------
L
I
G
Y
V
R
V
A
T
N
D
Q
------
N
T
D
L
Q
R
N
A
L
V
C
A
-----------
G
--
C
E
------
Q
I
F
E
D
--
K
L
S
G
T
R
-
T
D
R
-
P
G
L
K
R
A
L
K
R
L
Q
K
G
--------
D
T
L
V
V
W
K
L
D
R
L
G
R
-
S
-
M
K
H
L
I
-
S
L
V
G
-
E
L
R
E
R
G
I
N
F
------
R
S
L
T
-
D
S-
I
---------
D
--
T
S
S
P
M
-
G
R
F
F
F
-
H
V
M
G
A
L
A
E
-----
V
E
R
E
L
I
I
E
R
T
M
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_PDB
57.27
31%
-73
- C3 -
3UJ3
-
GIN_BPMU
X:
[2-125]
--------------------------------------------------
L
I
G
Y
V
R
V
A
T
N
D
Q
------
N
T
D
L
Q
R
N
A
L
V
C
-
A
----------
G
--
C
E
Q
----
I
F
---
E
-
D
K
L
S
G
T
R
-
T
D
R
-
P
G
L
K
R
A
L
K
R
L
Q
K
G
--------
D
T
L
V
V
W
K
L
D
R
L
G
R
-
S
-
M
K
H
L
I
-
S
L
V
G
-
E
L
R
E
R
G
I
N
F
R-----
S
L
T
D
-
S
--
I
---------
D
--
T
S
S
P
M
-
G
R
F
F
F
-
H
V
M
G
A
L
A
E
-----
V
E
R
E
L
I
I
E
R
T
M
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
57.08
20%
-68
- C3 -
2R0Q
1
BIN3_STAAU
C:
[1-200]
-------------------------------------------------
M
I
I
G
Y
A
R
V
S
S
L
D
Q
------
N
L
E
R
Q
L
E
N
-
L
K
T
F
----------
G
--
A
E
K
----
I
F
T
E
K
N
-----------
R
-
P
I
L
Q
K
A
L
N
F
V
R
M
G
--------
D
R
F
I
V
E
S
I
D
R
L
G
R
-
N
-
Y
N
E
V
I
-
H
T
V
N
-
Y
L
K
D
K
E
V
Q
L
------
M
I
T
S
-
L
--
P
MMNEVIGNP
L
--
L
D
K
F
M
-
K
D
L
I
I
-
Q
I
L
A
M
V
S
E
-----
Q
E
R
N
E
S
K
R
R
Q
A
Q
G
I
Q
V
A
K
E
K
G
VYKGRPLLYSPNAKD
P
Q
----------
K
R
V
I
Y
H
R
V
V
E
M
L
E
E
G
------
Q
---
A
I
S
----------------------
K
I
-------------
A
K
E
V
N
I
T
R
Q
T
V
-------
Y
R
I
K
H
D
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
56.34
25%
-67
- C3 -
1GDT
3
TNR1_ECOLI
A:
[2-181]
-------------------------------------------------
R
L
F
G
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
L
K
D
A
-----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
-
A
S
G
S
S
-
S
D
R
-
K
G
L
D
L
L
R
M
K
V
E
E
G
--------
D
V
I
L
V
K
K
L
D
R
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
-
D
G-
I
---------
S
--
T
D
G
E
M
-
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
E
R
T
N
E
G
R
Q
E
A
M
A
K
G
---------------
V
V
----------
F
-
G
R
K
R
---------------------
K
----------------------
I
D
-------------
R
D
------
A
V
L
-------
N
M
W
Q
Q
-----
G
L
G
A
S
H
I
S
K
T
M
N
--------------
I
A
R
S
-------
T
V
Y
K
V
I
N
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
55.82
13%
56
- C3 -
4BQQ
-
?
A:
[1-370]
----------------------------------------------M
D
T
Y
A
G
A
Y
D
R
Q
S
R
E
R
S
A
A
S
P
A
T
Q
R
S
A
N
E
D
K
A
A
D
L
Q
----------
R
--
E
V
E
R
D
G
G
R
F
R
F
V
G
-
H
F
S
E
A
P
G
-
A
E
R
-
P
E
F
E
R
I
L
N
E
C
R
A
G
R
--
L
----
N
M
I
I
V
Y
D
V
S
R
F
S
R
-
L
K
V
M
D
A
I
-
P
I
V
S
-
E
L
L
A
L
G
V
T
I
------
V
S
T
Q
-
E
--
G
---------
V
F
R
Q
G
N
V
M
-
D
L
I
H
L
-
I
M
R
L
D
A
S
H
-----
K
E
S
S
L
K
S
A
K
I
L
D
T
K
N
L
Q
R
E
L
G
---------------
G
Y
----------
V
G
G
K
A
P
Y
G
F
E
L
V
S
E
T
------
K
---
E
I
T
----------------------
R
N
G------------
R
M
V
N
V
V
I
N
K
L
A
-------
H
S
T
T
P
L
T
G
P
-----
F
E
F
E
P
D
V
I
R
W
W
W
R
E
--
I
K
T
-------------------------------------
H
K
P
G
S
I
T
--
G
L
C
K
R
M
D
A
---
D
A
V
---------------------------
P
T
R
G
W
---------
D
P
A
T
V
M
R
I
L
R
D
-----
P
R
I
A
G
--
F
A
A
E
V
I
Y
K
K
K
P
D
G
---
T
P
T
T
K
I
E
----
G
-----------------------------------------------------------------------------------------
Y
R
I
Q
-
R
D
P
I
T
L
R
--------
P
V
E
L
D
-
C
G
P
I
I
E
---------------------
P
A
E
W
Y
E
L
Q
----
A
W
L
D
G
R
G
R
------
G
K
G
L
-
S
R
G
Q
A
I
L
S
A
M
----------
D
K
L
Y
C
E
C
G
A
--------------------------------------------------------------------------
8
HHSearch
55.67
26%
-94
- C3 -
2GM5
-
TNR1_ECOLI
A:
[2-128]
-------------------------------------------------
A
L
F
G
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
L
K
D
A
-----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
-
A
------
D
R
-
K
G
L
D
L
L
R
M
K
V
K
E
G
--------
D
V
I
L
V
K
K
L
D
H
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
-
D
G-
I
---------
S
--
T
D
S
Y
I
-
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
E
R
T
N
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_PDB
55.37
41%
1
- C- -
3BVP
-
?
A:
[5-134]
--------------------------------------------------
V
A
I
Y
T
R
V
S
T
T
N
Q
-
A
E
E
G
F
S
I
D
E
Q
I
D
R
L
T
K
Y
A
E
A
M
-------
G
--
W
Q
V
----
S
D
T
Y
T
D
-
A
G
F
S
G
A
K
-
L
E
R
-
P
A
M
Q
R
L
I
N
D
I
E
N
K
A
--
F
----
D
T
V
L
V
Y
K
L
D
R
L
S
R
-
S
-
V
R
D
T
L
Y
L
V
K
D
-
V
F
T
K
N
K
I
D
F
------
I
S
L
N
-
E
--
S
---------
I
D-
T
S
S
A
M
-
G
S
L
F
L
-
T
I
L
S
A
I
N
E
-----
F
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_PDB
55.05
28%
-79
- C3 -
1GDT
3
TNR1_ECOLI
A:
[6-139]
-----------------------------------------------------
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
-
L
K
D
A
----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
A
-
S
G
S
S
-
S
D
R
-
K
G
L
D
L
L
R
M
K
V
E
E
G
D
--
V
------
I
L
V
K
K
L
D
R
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
-
D
--
G
---------
I
--
S
T
D
G
E
M
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
E
R
T
N
E
G
R
Q
E
A
M
A
K
G
---------------
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
55.02
27%
14
- C3 -
3GUV
-
?
A:
[7-155]
-------------------------------------------------
K
V
Y
L
Y
T
R
V
S
T
S
I
Q
-
I
-
E
G
Y
S
L
E
A
Q
K
S
R
M
K
A
F
A
I
Y
N
-------
D
--
Y
E
I
----
V
G
E
Y
E
D
-
A
G
K
S
G
K
S
I
E
G
R
-
I
Q
F
N
R
M
M
E
D
I
K
S
G
K
DG
V
----
S
F
V
L
V
F
K
L
S
R
F
A
R
-
N
-
A
A
D
V
L
-
S
T
L
Q
-
I
M
Q
D
Y
G
V
N
L
------
I
C
V
E
-
D
G-
I
---------
D
--
S
S
K
D
---
K
L
M
I
-
S
V
L
S
A
V
A
E
-----
I
E
R
E
N
I
R
I
Q
T
M
E
G
C
I
Q
K
A
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_PDB
54.69
28%
-89
- C3 -
2GM5
-
TNR1_ECOLI
A:
[6-128]
-----------------------------------------------------
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
-
L
K
D
A
----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
A
-------
D
R
-
K
G
L
D
L
L
R
M
K
V
K
E
G
D
--
V
------
I
L
V
K
K
L
D
H
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
D
G
--
I
---------
S
--
T
D
S
Y
I
-
G
K
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
E
R
T
N
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_PDB
54.51
27%
-93
- C3 -
2GM4
2
TNR1_ECOLI
A:
[6-139]
-----------------------------------------------------
Y
A
R
V
S
T
S
Q
Q
------
S
L
D
I
Q
V
R
A
-
L
K
D
A
----------
G
--
V
K
A
----
N
R
I
F
T
D
-
K
A
-
S
-----
D
R
-
K
G
L
D
L
L
R
M
K
V
K
E
G
D
--
V
------
I
L
V
K
K
L
D
R
L
G
R
-
D
-
T
A
D
M
I
-
Q
L
I
K
-
E
F
D
A
Q
G
V
S
I
------
R
F
I
D
-
D
--
S
---------
I
D-
T
S
S
A
M
-
G
R
M
V
V
-
T
I
L
S
A
V
A
Q
-----
A
E
R
Q
R
I
L
Q
R
T
N
E
G
R
Q
E
A
M
A
K
G
---------------
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
54.15
20%
-46
- C3 -
2R0Q
1
BIN3_STAAU
C:
[1-200]
-------------------------------------------------
M
I
I
G
Y
A
R
V
S
S
L
D
Q
------
N
L
E
R
Q
L
E
N
L
K
T
F
G
----------
A
--
E
-------
K
I
F
T
E
--
K
-------
N
R
-
P
I
L
Q
K
A
L
N
F
V
R
M
G
--------
D
R
F
I
V
E
S
I
D
R
L
G
R
-
N
-
Y
N
E
V
I
-
H
T
V
N
-
Y
L
K
D
K
E
V
Q
L
------
M
I
T
S
-
L
P-
M
MNEVIGNP-
L
--
L
D
K
F
M
-
K
D
L
I
I
-
Q
I
L
A
M
V
S
E
-----
Q
E
R
N
E
S
K
R
R
Q
A
Q
G
I
Q
V
A
K
E
K
G
---------------
V
Y
----------
K
-
G
-
R
P
L
L
Y
S
P
N
---------------
A
----------------------
K
D
-------------
P
Q
K
R
V
I
Y
H
R
V
V
-------
E
M
L
E
E
-----
G
Q
A
I
S
K
I
A
K
E
V
N
--------------
I
T
R
Q
-------
T
V
Y
R
I
K
H
D
N
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
53.62
41%
2
- C- -
3BVP
-
?
A:
[4-136]
-------------------------------------------------
K
V
A
I
Y
T
R
V
S
T
T
N
Q
-
A
E
E
G
F
S
I
D
E
Q
I
D
R
L
T
K
Y
A
E
A
M
-------
G
--
W
Q
V
----
S
D
T
Y
T
D
-
A
G
F
S
G
A
K
-
L
E
R
-
P
A
M
Q
R
L
I
N
D
I
E
N
K
A
--
F
----
D
T
V
L
V
Y
K
L
D
R
L
S
R
-
S
-
V
R
D
T
L
-
Y
L
V
K
D
V
F
T
K
N
K
I
D
F
------
I
S
L
N
-
E
S-
I
---------
D
--
T
S
S
A
M
-
G
S
L
F
L
-
T
I
L
S
A
I
N
E
-----
F
E
R
E
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_PDB
53.28
31%
-47
- C3 -
4M6F
2
GIN_BPMU
A:
[2-136]
--------------------------------------------------
L
I
G
Y
V
R
V
S
T
N
D
Q
------
N
T
D
L
Q
R
N
A
L
V
C
-
A
----------
G
--
C
E
Q
----
I
F
---
E
-
D
K
L
S
G
T
R
-
T
D
R
-
P
G
L
K
R
A
L
K
R
L
Q
K
G
--------
D
T
L
V
V
W
K
L
D
R
L
G
R
-
S
-
M
K
H
L
I
-
S
L
V
G
-
E
L
R
E
R
G
I
N
F
R
-----
S
L
T
D
-
S
--
I
---------
D
--
T
S
S
P
M
-
G
R
F
F
F
-
H
V
M
G
A
L
A
E
-----
V
E
R
E
L
I
I
E
R
T
M
A
G
L
A
A
A
R
N
K
G
---------------
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------