@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu25970: (2016-07-11 )
MSKLDEMTAYLPPFLTKLKEMAELLKAEAPEFEKQNNSIFDLTDQLFVTTATWGLERWEKILNVPRESGDTDEIRRLRLISKMSNIPPATYRAIEHALNRFLKNPSAQVRLLPGEYRFKVDIDIDDMQHMSELIETLENMKPAHLAYTLRAALNEPLQIKDTVILNNRRYRKASELKVGYSVTLNNNEVVLV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40.....----...------50-.........60...-...-.-----.70........80........90..---......100.......110.......120.......130.........140.......150--........160.......170......--.180.......190--------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
K
L
D
E
M
T
A
YL
P
P
F
L
T
K
L
K
E
M
A
E
L
L
K
AEAP
E
F
EKQNN
S
I
FDLTD
Q
L
----
F
V
T
------
T
--
A
T
W
G
L
E
R
W
E
K
I
LNV-PRE-S-----G
D
T
D
E
I
R
R
L
R
L
I
S
K
M
SNIP
P
A
T
Y
R
A
---
I
E
H
A
L
N
R
F
LKNPS
A
Q
V
R
LLPG
E
Y
R
F
K
V
D
I
D
I
D
D
M
Q
H
M
--
S
E
L
I
E
T
L
E
NM
K
P
A
H
L
A
Y
T
L
R
A
---ALNEP
L
Q
I
K
D
T
V
I
LNNRRYRKASE
L
K
V
--
G
Y
S
V
T
LNN
N
E
V
V
LV--------------------------------------------------------------------------------------------
27
Fugue
64.41
22%
-46
- C2 -
1AA7
-
M1_I34A1
A:
[1-158]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
T
E
V
E
T
Y
V
L
S
I
I
P
S
G
P
L
K
A
E
I
A
Q
R
L
E
D
V
F
A
G
K
N
T
D
L
E
V
L
M
E
W
L
K
T
RP
I
L
S
------
P
--
L
T
K
G
I
L
G
F
V
F
T
L
T
V
-
P
S
E
-
R
-----
G
L
Q
---
R
R
---------------
R
F
---
V
Q
N
A
L
N
G
--------------------
N
G
D
P
N
N
M
D
K
A
--
V
K
L
Y
R
K
L
K
R
E
I
T
F
H
G
A
K
E
I
S
L
---
S
Y
S
A
G
A
L
A
S
C
M
G
L
I
Y
N
R
M
G
A
V
T
T
E
V
A
F
--
G
L
V
C
A
T
C
E
Q
I
A
D
S
Q
--------------------------------------------------------------------------------------------
30
Fugue
60.13
18%
0
- C- -
1JJ2
-
RL32_HALMA
X:
[95-236]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
L
Q
A
R
G
L
T
E
K
T
P
D
L
S
--
D
E
D
A
R
L
L
T
Q
R
H
R
V
G
K
P
Q
F
N
R
--------------------------
Q
D
H
H
K
K
K
R
V
S
T
S
-
W
R
K
-
P
-----
R
G
Q
L
S
K
Q
R
R
G
I
K
G
K
-
G
D
T
V
E
A
G
F
R
--------------
S
P
T
A
V
R
G
K
H
P
S
G
F
E
E
V
R
V
H
N
V
D
D
L
E
G
V
--
D
G
D
-----------------------
T
E
A
V
R
I
A
S
K
V
--
G
A
R
K
R
E
R
I
E
E
E
A
E
--
D
A
G
I
R
V
L
N
P
T
Y
V
E
V
--------------------------------------------------------------------------------------------
32
Fugue
59.32
14%
0
- C- -
1FWX
6
NOSZ_PARDE
A:
[3-593]
ADGSVAPGQLDD
Y
Y
G
F
W
S
S
G
QSG
E
M
R
I
L
G
I
PSMREL
M
R
V
P
V
FNRCSATGWGQT
N
E
S
V
R
I
H
E
R
TMS
E
R
T
K
K
F
L
A
A
N
GKRIHD
N
G
D
L
H
H
V
H
M
S
F
T
EGKYDGR
F
L
F
M
N
D
KANT
R
V
A
R
V
R
CDVMKCD
A
I
L
E
I
P
NAKGI
H
G
L
R
P
QKWPRSN
Y
V
F
C
N
GE
D
E
T
P
LVNDGTNMEDVAN
Y
V
N
V
F
T
A
V
DADKWEVA
W
Q
V
L
V
S
G
NL
D
N
C
D
A
D
YEGK
W
A
F
S
T
S
YNSEKGMT
L
P
E
M
T
AAE
M
D
H
I
V
V
F
N
I
A
E
I
E
K
A
I
A
A
GD
Y
Q
E
L
NG
V
K
V
V
D
GRKEASSLF
T
R
Y
I
P
I
A
N
NP
H
G
C
N
M
A
PDKK
H
L
C
V
A
GKLSP
T
V
T
V
L
D
V
T
R
F
D
A
V
F
Y
-------
E
N
A
D
P
R
S
A
V
V
A
E
P
E
L
G
L
G
P
L
H
T
A
F
D
G
R
G
N
A
----
Y
T
S
L
FLDS
Q
V
--
V
K
W
N
I
E
D
A
I
R
A
Y
A
G
-
E
K
V
-
D
-----
P
I
K
D
K
L
D
V
H
Y
Q
P
G
H
L
K
T
V
M
G
E
T
L
D
A
TN
D
W
L
V
C
L
S
K
F
S
K
D
R
F
L
N
V
G
P
L
K
P
E
N
D
Q
L
I
D
I
S
G
D
K
M
V
L
V
--
H
D
G
P
T
F
A
E
P
H
D
A
I
A
V
H
P
S
I
L
S
---
D
I
K
S
V
W
D
R
N
D
P
M
W
A
E
T
R
A
Q
A
E
A
D
G
V
D
I
DN
W
T
E
E
V
I
R
D
G
N
K
V
R
V
Y
M
S
S
V
A
PSFSIE
S
F
T
V
K
EGDE
V
T
V
I
V
T
N
LDEIDDL
T
H
G
F
T
M
G
NYG
V
A
M
E
I
G
PQ
M
T
S
S
V
T
F
V
AANP
G
V
Y
W
Y
Y
C
QWFCHALHMEM
R
G
R
M
L
V
E
P
K
2
PsiBlast_PDB
56.37
32%
-286
- C4 -
4P0Q
-
A:
[17-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
----
H
R
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.59
32%
-218
- C4 -
4P0S
2
MUS81_HUMAN
A:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
53.13
22%
28
- C2 -
2XL4
2
LNTA_LISMO
A:
[26-172]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
K
L
S
-------------
T
K
D
L
A
L
I
K
A
D
L
A
E
F
E
A
R
E
L
S
S
E
K
I
L
K
D
T
----
I
K
E
------
E
--
S
W
S
D
L
D
F
A
N
D
N
I
N
Q
M
I
G
T
M
K
-----
R
Y
Q
Q
E
I
L
S
I
D
A
I
K
R
A
S
E
----------------------
A
S
A
D
T
E
A
F
K
K
I
F
K
E
W
S
E
F
K
I
E
R
I
Q
V
T
--
I
D
L
L
----
N
G
K
K
D
S
E
A
V
F
K
K
T
---
Y
P
N
---
Q
I
I
F
K
K
V
R
T
N
K
L
Q
T
A
L
N
N
L
K
V
--
G
Y
E
L
L
D
----------------------------------------------------------------------------------------------------
16
PsiBlast_CBE
53.02
32%
-190
- C4 -
4P0R
1
C:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_CBE
52.85
32%
-207
- C4 -
4P0S
2
MUS81_HUMAN
E:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_CBE
52.38
32%
-205
- C4 -
4P0S
2
MUS81_HUMAN
C:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_CBE
52.26
32%
-220
- C4 -
4P0S
2
G:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
52.11
18%
35
* C3 *
4B8V
3
?
A:
[36-224]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGSTSNIK
Y
T
V
V
K
G
D
T
L
T
S
I
A
K
K
F
K
S
G
I
C
N
I
V
S
V
N
K
L
A
N
P
-------
N
L
I
E
L
G
A
T
L
----
I
I
P
------
E
NC
S
N
P
D
N
K
S
C
V
S
T
P
A
E
-
P
T
E
-
T
CVPGL
P
G
S
Y
T
I
V
S
G
D
T
L
T
N
I
S
Q
D
F
N
I
T
L
D
S
---
L
I
A
A
-
N
T
Q
I
E
N
P
D
A
I
------
D
V
G
Q
I
I
T
V
P
V
C
P
S
S
Q
C
--
E
A
V
--
G
T
Y
N
I
V
A
G
D
L
F
V
D
L
A
A
---
T
Y
H
--
T
T
I
G
Q
I
K
A
L
N
N
N
V
--
N
P
S
K
L
K
V
--
G
Q
Q
I
I
L
P
Q
D
C
K
N
V
T
--------------------------------------------------------------------------------------------
3
PsiBlast_PDB
51.83
32%
-171
- C4 -
4P0R
-
MUS81_HUMAN
A:
[17-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
50.10
16%
-65
- C3 -
3ZMD
7
?
A:
[27-174]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
R
W
L
T
--
D
T
E
Q
C
A
W
R
T
H
L
E
V
N
R
L
L
T
H
Q
L
E
K
D
L
Q
P
F
G
L
T
-----------------------------
M
N
D
Y
E
I
L
V
N
-
L
S
E
-
S
-----
E
G
----
D
R
M
R
-
M
S
D
L
A
T
A
T
M
Q
S
K
S
R
---
L
S
H
Q
I
T
R
M
E
N
A
N
L
V
R
R
E
N
C
E
S
D
R
R
G
L
------
F
A
V
L
T
--
E
H
G
L
E
T
M
R
K
V
A
P
H
H
V
A
-
S
V
R
R
---
H
F
I
D
L
L
A
P
E
D
L
T
E
L
D
K
A
L
K
P
I
A
E
H
L
R
G
--
Q
---------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.09
25%
-13
- C4 -
3A2B
2
?
A:
[209-316]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
A
H
S
L
G
V
I
G
H
-
K
G
A
G
T
A
S
H
F
G
---
L
N
D
D
V
D
L
I
M
G
T
F
S
K
S
L
A
S
L
G
G
F
V
A
G
D
A
D
V
-
I
D
F
L
K
H
N
--
A
R
S
V
M
F
S
A
S
M
T
P
A
S
V
A
S
T
L
K
A
L
E
I
I
Q
N
E
P
E
H
I
E
K
--
L
W
K
N
T
D
Y
A
K
A
Q
L
L
D
H
--
G
F
--------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
49.78
32%
-175
- C4 -
4P0P
1
A:
[17-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
P
G
E
Y
R
V
L
L
C
V
D
I
G
E
T
R
G
------
P
E
L
L
R
E
L
Q
R
L
H
V
T
H
T
V
R
-------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
48.35
18%
-27
- C1 -
1XI0
-
?
A:
[3-145]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
Y
S
I
T
L
R
V
Y
Q
T
N
-----
R
D
R
G
Y
F
S
I
V
E
K
T
V
W
H
F
A
N
G
G
-------------------------
T
W
S
E
A
N
G
A
H
T
L
T
Q
-
G
G
S
-
G
-----
T
-----------------------------
S
G
V
L
R
F
L
S
T
K
G
E
R
I
T
V
A
V
G
V
H
N
Y
K
R
W
C
D
V
V
T
G
L
K
P
--
D
E
---
T
A
L
V
I
N
P
Q
Y
Y
N
N
G
G
R
D
---
Y
V
R
E
K
Q
L
A
E
Y
S
V
T
S
A
I
G
T
-----
K
V
E
V
--
V
Y
T
V
A
E
G
N
N
L
E
A
N
V
I
F
S-----------------------------------------------------------------------------------------
11
PsiBlast_PDB
47.17
22%
18
- C4 -
1ZVV
3
CCPA_BACSU
A:
[21-111]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
N
G
N
P
N
V
K
P
S
T
R
K
K
---
V
L
E
T
I
E
R
L
G
Y
R
P
N
A
V
A
R
G
L
A
S
K
K
T
T
T
V
G
V
I
I
P
D
I
S
N
I
F
Y
A
E
L
A
R
G
I
E
D
I
A
S
M
Y
-
K
Y
N
I
I
L
---
S
N
S
D
Q
N
Q
D
K
Q
L
H
L
L
N
N
-----------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
44.30
42%
-157
- C4 -
2P4H
-
VESTR_MEDSA
X:
[255-275]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
F
I
V
P
I
E
E
M
S
Q
L
L
S
A
K
Y
P
E
Y
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
43.92
22%
18
- C4 -
1RZR
4
CCPA_BACME
G:
[21-111]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
N
G
N
P
N
V
K
P
S
T
R
K
K
---
V
L
E
T
I
E
R
L
G
Y
R
P
N
A
V
A
R
G
L
A
S
K
K
T
T
T
V
G
V
I
I
P
D
I
S
N
I
FY
A
E
L
A
R
G
I
E
D
I
A
T
M
Y
-
K
Y
N
I
I
L
---
S
N
S
D
Q
N
Q
D
K
E
L
H
L
L
N
N
-----------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
39.11
22%
-2
- C4 -
2HSG
-
CCPA_BACME
A:
[21-111]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
N
G
N
P
N
V
K
P
S
T
R
K
K
---
V
L
E
T
I
E
R
L
G
Y
R
P
N
A
V
A
R
G
L
A
S
-
K
T
T
T
V
G
V
I
I
P
--
S
N
I
F
Y
A
E
L
A
R
G
I
E
D
I
A
T
M
Y
-
K
Y
N
I
I
L
---
S
N
S
D
Q
N
Q
D
K
E
L
H
L
L
N
N
-----------------------------------------------------------------------------------------------------------------------