@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu26580: (2016-07-11 )
MSEDVKKYFTTGEFSKLCRVKKQTLFHYDEIGLFSPEIKKENGYRYYSYHQFETFQVISLFKELGVPLKEIKCLIKGKTPDKILHVLKEKSIEIDKKINELKQLQTILQTKVTLTEQALETDFSSISFEYLNEETFMLSRKTLNLPERKYVAAISELIHEVQQYELDEGYPIGGIFAREQILEKDFYNYSYFYIKVKDGAENINYHVRPKGLYAVGYEIGGNTEEAYRRIIEFIERNGMQIGENAYEEYMLDEMVVDGYENTYAKILLQVKEV
Atome Classification :
(20 SA)
.........10........20........30.....-...40.........50........60......-..70....-...--.-----80--....-------....--------------90........100......-----.110......---------------------.120.-.......130.......140..---.....150.......160.......170.....-..180--.......190....------..-----.200........210.....-------..220---.-.-.......230.......240.......250.......260.......270.----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
S
E
D
V
K
K
Y
FTT
G
E
F
S
K
L
C
R
V
K
K
Q
T
L
FHYDEIGLFSP-EIKK-ENG
Y
R
Y
Y
S
Y
HQ
F
E
T
F
Q
V
I
S
L
F
K
E
LGV
P
-
L
K
E
I
K
C
L
I-KGK--
T
-----
P
D
--
K
I
L
H
-------
V
L
K
E
--------------KSI
E
I
D
K
K
I
N
E
L
K
Q
L
Q
T
I
L
-----
Q
T
K
V
T
L
T
E
Q
A
---------------------
L
E
T
-
D
-
F
S
S
I
S
F
E
YLNEE
T
F
M
L
SRKTLN---L
P
E
R
K
Y
V
A
A
I
S
E
L
I
H
E
V
Q
Q
YELDEGYPI
G
G
I
F
A
-
R
E
Q
I
L
--
E
K
DFYN
Y
S
Y
F
Y
I
K
V------KD-----GA-ENI
N
Y
H
VRPK
G
L
Y
A
V
G
Y
-------EIG-----G-
N
-
T
E
E
A
Y
R
R
I
I
E
F
I
E
RNGMQI
G
E
N
A
Y
E
E
Y
M
L
D
E
M
V
VDGYE
N
T
Y
A
K
I
L
L
QVKEV----------------------------------------------------------
41
HHSearch
79.18
19%
0
- C- -
1R8E
18
BMRR_BACSU
A:
[3-277]
-----
E
S
Y
Y
S
I
G
E
V
S
K
L
A
N
V
S
I
K
A
L
R
Y
Y
D
K
I
D
L
F
K
P
-
A
Y
V
D
P
D
T
S
Y
R
Y
Y
T
D
S
Q
L
I
H
L
D
L
I
K
S
L
K
Y
I
G
T
P
-
L
E
E
M
K
K
A
Q
-
D
L
E
--------
M
E
--
E
L
F
A
-------
F
Y
T
E
--------------
Q
E
R
Q
I
R
E
K
L
D
F
L
S
A
L
E
Q
T
I
-----
S
L
V
K
K
R
M
K
R
Q
---------------------
M
E
Y
P
A
-
L
G
E
V
F
V
L
D
E
E
E
I
R
I
I
Q
T
E
A
E
G
I
G--
P
E
-
N
V
L
N
A
S
Y
S
K
L
K
K
F
I
E
S
A
D
G
F
T
N
N
S
Y
G
A
T
F
S
-
F
Q
P
Y
T
SI
D
E
M
T
--
Y
R
H
I
F
T
P
V
------
L
T
NKQIS
S
I
T
P
D
M
E
I
T
T
I
P
K
G
R
Y
A
C
I
A
-------
Y
N
F
-----
S
P
E
H
Y
F
L
N
L
Q
K
L
I
K
Y
I
A
D
R
Q
L
T
V
V
S
D
V
Y
E
L
I
I
P
I
H
Y
S
P
K
K
Q
E
E
Y
R
V
E
M
K
I
R
I
A
------------------------------------------------------------
34
Fugue
66.86
32%
-163
- C4 -
1JBG
-
MTA_BACSU
A:
[2-107]
-------
K
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
N
P
-
S
A
L
T
-
D
A
G
Y
R
L
Y
S
D
A
D
L
E
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
-
L
D
E
I
K
E
M
L
-
D
H
P
--
N
-----
F
D
--
R
K
A
A
-------
L
Q
S
Q
--------------
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
D
-----
R
T
L
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.85
32%
-171
- C4 -
1JBG
-
MTA_BACSU
A:
[3-107]
--------
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
N
P
-
S
A
L
T
-
D
A
G
Y
R
L
Y
S
D
A
D
L
E
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
-
L
D
E
I
K
E
M
L
-
D
H
P
--
N
-----
F
D
--
R
K
A
A
-------
L
Q
S
Q
--------------
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
D
-----
R
T
L
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
65.04
20%
10
- C4 -
1EXJ
3
BMRR_BACSU
A:
[3-277]
-----
E
S
Y
Y
S
I
G
E
V
S
K
L
A
N
V
S
I
K
A
L
R
Y
Y
D
K
I
D
L
F
K
P
A
Y
V
D
P
-
D
T
S
Y
R
Y
Y
T
D
S
Q
L
I
H
L
D
L
I
K
S
L
K
Y
I
G
T
P
-
L
E
E
M
K
K
A
Q
-
D
-
L
--
E
-----
M
E
--
E
L
F
A
-------
F
Y
T
E
--------------
Q
E
R
Q
I
R
E
K
L
D
F
L
S
A
L
E
Q
T
I
-----
S
L
V
K
K
R
M
K
R
Q
---------------------
M
E
Y
-
P
A
L
G
E
V
F
V
L
D
E
E
E
I
R
I
I
Q
T
E
A
E
G
I
---
G
P
E
N
V
L
N
A
S
Y
S
K
L
K
K
F
I
E
S
A
D
G
F
T
N
N
S
Y
G
A
T
F
S
-
F
Q
P
Y
T
--
S
I
D
E
M
T
Y
R
H
I
F
T
P
V
L
TNKQI
S
S
-----
I
T
-
P
D
M
E
I
T
T
I
P
K
G
R
Y
A
C
I
A
-------
Y
N
F
SP---
E
-
H
-
Y
F
L
N
L
Q
K
L
I
K
Y
I
A
D
R
Q
L
T
V
V
S
D
V
Y
E
L
I
I
P
I
H
Y
S
P
K
K
Q
E
E
Y
R
V
E
M
K
I
R
I
A
------------------------------------------------------------
2
PsiBlast_PDB
64.23
36%
-163
- C4 -
3QAO
5
?
A:
[8-101]
------------
E
L
A
E
L
T
G
V
S
V
R
T
L
H
H
Y
D
K
I
G
L
L
V
P
-
Q
K
D
D
-
W
N
G
Y
R
I
Y
S
E
K
D
V
D
K
L
Q
Q
I
L
F
F
K
E
L
D
F
P
-
L
K
K
I
Q
Q
I
L
-
D
D
P
--
L
-----
F
D
--
K
N
V
A
-------
L
D
M
Q
--------------
R
H
L
L
I
E
K
K
----
Q
R
I
E
T
M
L
-----
A
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
62.59
32%
-142
- C4 -
1R8D
1
MTA_BACSU
B:
[3-107]
--------
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
N
P
-
S
A
L
T
-
D
A
G
Y
R
L
Y
S
D
A
D
L
E
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
-
L
D
E
I
K
E
M
L
-
D
H
P
--
N
-----
F
D
--
R
K
A
A
-------
L
Q
S
Q
--------------
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
D
-----
R
T
L
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.19
32%
-146
- C4 -
1R8D
1
MTA_BACSU
A:
[3-108]
--------
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
N
P
-
S
A
L
T
-
D
A
G
Y
R
L
Y
S
D
A
D
L
E
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
-
L
D
E
I
K
E
M
L
-
D
H
P
--
N
-----
F
D
--
R
K
A
A
-------
L
Q
S
Q
--------------
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
D
-----
R
T
L
L
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
HHSearch
60.77
29%
-158
- C4 -
3QAO
5
?
A:
[2-109]
------
N
A
M
Q
I
K
E
L
A
E
L
T
G
V
S
V
R
T
L
H
H
Y
D
K
I
G
L
L
V
P
-
Q
K
D
D
-
W
N
G
Y
R
I
Y
S
E
K
D
V
D
K
L
Q
Q
I
L
F
F
K
E
L
D
F
P
-
L
K
K
I
Q
Q
I
L
-
D
D
P
--
L
-----
F
---
D
K
N
V
-------
A
L
D
M
--------------
Q
R
H
L
L
I
E
K
K
Q
R
I
E
T
M
L
A
T
L
-----
D
L
T
I
K
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
60.18
28%
-163
- C4 -
2VZ4
1
TIPA_STRLI
A:
[2-105]
--------
Y
S
V
G
Q
V
A
G
F
A
G
V
T
V
R
T
L
H
H
Y
D
D
I
G
L
L
V
P
-
S
E
R
S
-
H
A
G
H
R
R
Y
S
D
A
D
L
D
R
L
Q
Q
I
L
F
Y
R
E
L
G
F
P
-
L
D
E
V
A
A
L
L
-
D
D
--------------
R
A
H
-------
L
R
R
Q
--------------
H
E
L
-
L
S
A
R
I
G
K
L
Q
K
M
------------
A
A
A
V
E
Q
A
---------------------
M
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
HHSearch
58.36
27%
-140
- C4 -
1R8D
1
MTA_BACSU
A:
[1-108]
------
M
K
Y
Q
V
K
Q
V
A
E
I
S
G
V
S
I
R
T
L
H
H
Y
D
N
I
E
L
L
N
P
-
S
A
L
T
-
D
A
G
Y
R
L
Y
S
D
A
D
L
E
R
L
Q
Q
I
L
F
F
K
E
I
G
F
R
-
L
D
E
I
K
E
M
L
-
D
H
P
--
N
-----
F
D
---
R
K
A
-------
A
L
Q
S
--------------
Q
K
E
I
L
M
K
K
K
Q
R
M
D
E
M
I
Q
T
I
-----
D
R
T
L
L
S
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
57.72
21%
-170
- C4 -
3HH0
-
?
A:
[1-114]
------
L
A
W
L
I
S
E
F
A
S
V
G
D
V
T
V
R
A
L
R
Y
Y
D
K
I
N
L
L
K
P
-
S
D
Y
T
-
E
G
G
H
R
L
Y
T
K
D
D
L
Y
V
L
Q
Q
I
Q
S
F
K
H
L
G
F
S
-
L
G
E
I
Q
N
I
I
-
L
Q
R
--
D
-----
I
E
T
E
V
F
L
R
-------
Q
M
H
F
--------------
Q
R
E
V
L
L
A
E
Q
E
R
I
A
K
V
L
S
H
M
-----
D
E
M
T
K
K
F
Q
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
57.50
21%
-120
- C4 -
2ZHG
3
SOXR_ECOLI
A:
[10-121]
------
A
L
L
T
P
G
E
V
A
K
R
S
G
V
A
V
S
A
L
H
F
Y
E
S
K
G
L
I
T
S
-
I
-
R
N
-
S
G
N
Q
R
R
Y
K
R
D
V
L
R
Y
V
A
I
I
K
I
A
Q
R
I
G
I
P
-
L
A
T
I
G
E
A
F
-
G
V
-TL
S
-----
A
K
--
E
W
K
Q
-------
L
S
S
Q
--------------
W
R
E
E
L
D
R
R
I
H
T
L
V
A
L
R
D
E
L
-----
D
G
C
I
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
56.28
25%
-153
- C4 -
2VZ4
1
TIPA_STRLI
A:
[1-105]
-------
S
Y
S
V
G
Q
V
A
G
F
A
G
V
T
V
R
T
L
H
H
Y
D
D
I
G
L
L
V
P
-
S
E
R
S
-
H
A
G
H
R
R
Y
S
D
A
D
L
D
R
L
Q
Q
I
L
F
Y
R
E
L
G
F
P
-
L
D
E
V
A
A
L
L
-
D
D
---------------
R
A
-------
H
L
R
R
--------------
Q
H
E
L
L
S
A
R
I
G
K
L
Q
K
M
A
A
A
V
-----
E
Q
A
M
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
56.21
19%
-143
- C4 -
2ZHG
4
SOXR_ECOLI
A:
[10-135]
------
A
L
L
T
P
G
E
V
A
K
R
S
G
V
A
V
S
A
L
H
F
Y
E
S
K
G
L
I
T
S
--
I
R
N
-
S
G
N
Q
R
R
Y
K
R
D
V
L
R
Y
V
A
I
I
K
I
A
Q
R
I
G
I
P
-
L
A
T
I
G
E
A
F
G
V
T
L
--
S
-----
A
K
--
E
W
K
Q
-------
L
S
S
Q
--------------
W
R
E
E
L
D
R
R
I
H
T
L
V
A
L
R
D
E
L
-----
D
G
C
I
G
C
G
C
L
S
---------------------
R
S
D
-
C
-
P
L
R
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
54.52
14%
-107
- C4 -
5AF3
1
VPB45_MYCTU
A:
[11-238]
-
L
R
F
D
V
P
L
Y
T
L
A
E
A
S
R
Y
L
V
V
P
R
A
T
L
A
T
W
A
D
Q
P
I
I
T
A
-
L
P
H
P
-
T
G
S
H
A
R
L
P
F
V
G
I
A
E
A
Y
V
L
N
A
F
R
R
A
G
V
P
-
M
Q
R
I
-----------------
R
--
P
S
L
D
-------
W
L
I
K
--------------
N
V
-----------------------
G
P
H
A
L
A
S
Q
D
---------------------
L
C
T
-
D
-
G
A
E
V
L
W
R
F
A
E
R
S
G
-------------
E
G
S
P
D
D
L
V
V
R
G
L
I
V
P
R
-----------
S
G
Q
Y
V
-
F
K
E
I
V
--
E
H
Y
L
Q
Q
I
S
F
---
A
D
------
D
N
-----
L
A
-
S
M
I
R
L
P
Q
Y
G
D
A
N
V
V
L
D
P
-------
R
R
G
-----
Y
-
G
------
Q
P
V
F
D
G
S
G
V
R
V
A
D
V
L
G
P
L
R
A
G
A
T
F
Q
A
V
A
D
D
Y
--
G
V
T
P
D
Q
L
R
D
A
L
D
A
----------------------------------------------------------
56
HHSearch
54.27
24%
-163
- C4 -
4R4E
2
GLNR_BACSU
B:
[6-80]
--
R
R
S
M
P
L
F
P
I
G
I
V
M
Q
L
T
E
L
S
A
R
Q
I
R
Y
Y
E
E
N
G
L
I
F
P
-
A
-
R
T
-
E
G
N
R
R
L
F
S
F
H
D
V
D
K
L
L
E
I
K
H
L
I
E
Q
G
V
N
-
M
A
G
I
K
Q
I
L
-
A
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
50.48
17%
-61
- C1 -
1YT3
11
RND_ECOLI
A:
[1-375]
--
M
N
Y
Q
M
I
T
T
D
D
A
L
A
S
L
C
E
A
V
R
A
----
F
P
A
I
A
L
D
T
E
-
F
V
R
T
-
R
T
Y
Y
P
Q
L
G
L
I
Q
L
F
D
G
E
H
L
A
L
I
D
P
L
G
I
T
D
W
S
P
L
K
A
I
L
-
R
D
P
--
S
-----
I
T
--
K
F
L
H
AG
S
E
D
L
E
V
F
L
N
--------------
V
F
G
E
L
P
Q
P
L
I
D
T
Q
I
L
A
A
F
C
GRPMS
W
G
F
A
S
M
V
E
E
Y
SG
V
T
L
D
KSESRTDWLARPLT
E
R
Q
C
-
E
-
Y
A
A
A
D
V
W
Y
L
L
P
I
T
A
K
L
M
V
E
T
E
A
S
GW
L
P
A
A
L
D
E
C
R
L
M
Q
M
R
R
Q
E
V
V
A
P
E
D
A
W
R
D
I
T
N
A
W
Q
L
R
T
R
Q
L
--
A
C
L
Q
L
L
A
D
W
R
L
R
K
A
------
R
E
-----
R
D
-
L
A
V
N
F
V
V
R
E
E
H
L
W
S
V
A
R
Y
MPGS
L
G
E
L
D
S
L
GLS
G
-
S
-
E
I
R
F
H
G
K
T
L
L
A
L
V
E
K
A
Q
T
L
P
E
D
A
L
P
Q
P
M
L
N
L
M
D
M
P
G
Y
R
K
A
F
K
A
I
K
S
L
I
T
D
V
S
E
T
H
KISAELLAS
R
R
Q
I
N
Q
L
L
N
W
H
W
KLKPQNNLPELISG
W
R
G
E
L
M
A
E
A
L
H
N
L
L
Q
EYPQ
42
HHSearch
49.93
18%
-105
- C4 -
3GP4
2
?
A:
[2-116]
-------
S
L
N
I
K
E
A
S
E
K
S
G
V
S
A
D
T
I
R
Y
Y
E
R
I
G
L
I
P
P
-
I
H
R
N
-
E
S
G
V
R
K
F
G
A
E
D
L
R
W
I
L
F
T
R
Q
M
R
R
A
G
L
S
-
I
E
A
L
I
D
Y
L
-
A
L
F
--
R
E
GEHT
L
E
--
A
R
A
E
-------
L
L
K
K
--------------
Q
R
I
E
L
K
N
R
I
D
V
M
Q
E
A
L
D
R
L
-----
D
F
K
I
D
N
Y
D
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
49.87
29%
-91
- C4 -
4UA1
1
?
A:
[3-107]
--------
F
R
I
G
E
L
A
D
K
C
G
V
N
K
E
T
I
R
Y
Y
E
R
L
G
L
I
P
E
-
P
----
E
K
G
Y
R
M
--
Q
Q
T
V
D
R
L
H
F
I
K
R
M
Q
E
L
G
F
T
-
L
N
E
I
-----------------
D
--
K
L
L
G
-------
V
V
D
R
DEA
K
C
R
D
M
Y
D
F
T
I
L
K
I
E
D
I
Q
R
K
I
E
D
L
K
R
I
E
R
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
49.62
28%
-113
- C4 -
4UA1
2
?
A:
[3-114]
--------
F
R
I
G
E
L
A
D
K
C
G
V
N
K
E
T
I
R
Y
Y
E
R
L
G
L
I
P
E
-
P
E
----
K
G
Y
R
M
--
Q
Q
T
V
D
R
L
H
F
I
K
R
M
Q
E
L
G
F
T
-
L
N
E
I
D
K
L
L
-
G
V
V
--
D
R
DEA
K
C
R
--
D
M
Y
D
-------
F
T
I
L
--------------
K
I
E
D
I
Q
R
K
I
E
D
L
K
R
I
E
R
M
L
-----
M
D
L
K
E
R
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------