@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu27040: (2016-07-12 )
MEKEKRLTKKEIFSMFIRSNFLLGSFNFERVQAMGYCYVMIPAIKKLYGPGAKRNEALQRHLEWFNTHPWLTAPIFGVTAAMEEEMANNKGIDGKAISGMKIGLMGPIAGVGDPIFWGTIRPVLAALGASLALGGNIAGPLLFFFLLNAIRLSTKYYGLKYGYVKGMEILQDLAGNRIQKLTEGASILGLFVMGALVSKWTTINIPIVVSRIKDESGKVDVQTVQNVLDSIMPGALPLGLTLLVAWMLRKGVNPLLIICGIFVIGILGYWAGFLA
Atome Classification :
(20 SA)
------------.........10---....----------...-..20---------------.-....-....30...-.-....40.---.......--50......--..----60..-......70......------..80----.....----.-...90........-100.......110.......120.......130-.........140....-...150..------.....160...----....170.......180---..-------......190.--------......200-------------...---......210.......220..--....-------.230.....--..240.......250..----------.....260.--......270...--------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------M
E
K
E
K
R
L
T
K
K
----
E
I
F
S
----------
M
F
I
-
R
SN----------------
F
-
L
LGS-F
N
F
E
R
V
Q
AM-
G
-
Y
C
Y
V
M
I
P
---
A
I
K
K
LYG--PGAK
R
N
E
A
--
L
Q
----
R
H
L
E
-
W
F
NTHPWLTA
P
I
F
G
------
V
T
A
-----
A
M
E
E
E
----
M
-ANNKGIDGKAIS
G
-
M
K
I
G
L
MGPIAGVGDP
I
F
W
G
T
I
R
P
V
L
A
A
L
G
A
S
---
L
ALGGN
I
A
G
P
L
L
F
F
F
L
-
L
N
A
I
R
LS
T
------
K
Y
Y
G
L
K
Y
G
Y
V
K
----
G
M
E
I
L
Q
D
L
A
G
N
R
I
Q
K
L
----TE-------G
A
S
I
L
G
L
F
V
M
--------
G
A
L
V
SK
W
---------------
T
T
I
---
N
I
P
I
V
V
S
RIKDESGK
V
D
V
Q
T
V
--
Q
N
V
L
-------
D
S
IMPG
A
L
P
--
L
G
L
T
L
L
V
A
W
M
L
R
KGV
N
P
----------
L
L
I
I
C
G
I
F
V
--
I
G
I
L
G
Y
W
A
G
F
LA--------------------------------------
20
Fugue
74.81
17%
-81
- C5 -
3EB8
-
VIRA_SHIFL
A:
[53-399]
------------
A
E
K
H
S
E
K
K
L
M
----
D
S
F
S
P
S
LSQDKMDG
E
F
A
-
H
A
N
----------------
I
---
D
G
-
I
S
I
R
L
C
L
N
K
-
G
-
I
C
S
V
F
Y
L
DGD
K
I
Q
S
T
Q
L
--
S
S
K
E
Y
N
N
L
--
L
S
S
LPP
K
Q
F
N
-
L
G
K
V
H
-
T
I
T
A
P
V
S
G
N
FKTHK
P
A
P
-----
E
V
I
E
T
----
A
-
I
N
------
C
C
T
S
I
-
I
P
N
D
D
Y
F
H
V
K
D
T
D
F
N
S
V
W
H
D
I
Y
R
D
I
R
A
S
D
S
N
S
T
K
I
Y
F
N
N
I
E
I
P
L
K
L
I
A
D
L
-
I
N
E
L
G
I
N
E
FIDSK
K
E
L
Q
M
L
S
Y
N
Q
V
N
----
K
I
-
I
N
S
N
F
P
Q
Q
D
L
C
F
Q
----
T
E
-------
K
L
L
F
T
S
L
F
Q
D
--------
P
A
F
I
S
A
L
---------------
T
S
A
F
WQ
S
L
H
I
T
S
S
S
V
E
H
I
Y
A
Q
I
M
S
E
N
I
--
E
N
R
L
-------
N
F
M
P
E
Q
R
V
I
NN
C
G
H
I
I
K
I
N
A
V
R
A
Y
E
V
S
S
----------
S
I
L
P
S
H
I
T
C
N
G
V
G
I
N
K
I
E
T
S
Y
L
V
H
AGTLPS
S
E
G
L
R
N
A
I
PPES
R
Q
V
S
F
A
I
I
S
P
D--------
28
Fugue
62.95
15%
-15
- C5 -
4XD1
14
?
A:
[21-417]
M
K
L
I
I
A
G
K
N
N
I
A
V
D
V
T
K
W
I
I
K
T
ISD
I
E
L
Y
S
----------
V
C
N
-
E
N
D
HGNDSFQLS
F
K
K
F
C
I
Q
F
-
N
I
P
I
-
I
S
L
E
D
A
Y
H
L
E
D
-
A
I
F
L
S
L
E
---
F
D
K
I
I
H
P
--
S
K
F
T
H
N
R
I
--
F
N
----
I
H
F
S
-
Y
L
P
A
Y
K
G
M
Y
T
S
A
W
P
------
I
L
N
-----
N
E
Q
E
S
G
V
T
L
H
-
K
I
D
H
G
I
D
T
G
A
I
I
D
-
Q
Q
K
F
P
L
D
-
I
E
E
T
A
K
T
L
Y
L
K
Y
I
K
I
G
T
E
I
V
I
K
N
---
L
P
A
L
I
S
G
N
Y
S
I
V
E
Q
S
A
-
I
K
S
S
Y
Y
S
K
------
K
S
I
D
Y
K
N
L
M
I
D
LNKT
A
H
E
I
L
Q
Q
I
R
A
F
T
F
R
D
Y
QLPR
I
D
-------
D
I
D
I
F
H
G
E
I
L
SSKSLSKP
G
T
I
L
E
K
N
NY
H
L
I
L
S
T
I
D
Y
D
I
K
L
Y
S
D
---
N
F
D
E
I
L
T
A
C
E
D
K
S
P
E
F
I
S
K
L
L
KT
E
N
I
L
FEKNHLG
A
S
P
I
I
I
A
A
Y
--
H
G
N
M
D
V
I
E
W
L
V
S
K
G
V
N
I
NDRNYKGTT
V
A
M
Y
F
K
D
Y
M
L
--
R
S
--
G
N
Y
T
G
L
E
N
L
I
N
L
GLDLFLKDNEGLS
V
F
D
Y
M
R
K
N
KN
I
E
L
F
N
F
M
S
T
FN
24
Fugue
61.31
13%
-5
- C3 -
1QUP
2
CCS1_YEAST
A:
[1-221]
-------------------
T
T
N
----
D
--------------------------------------------
T
Y
E
A
T
Y
A
I
-
P
M
H
C
E
N
C
V
N
---
D
I
K
A
C
L
K
NV
P
G
I
N
S
L
N
F
--
D
I
----
E
Q
Q
I
M
S
V
E
S
----
S
V
A
P
S
T
------
I
I
N
-----
T
L
R
N
------------------
C
G
-
K
D
A
I
I
R
G
A
--
G
K
P
N
S
S
A
V
A
I
L
E
-
T
F
Q
K
Y
T
I
D
---
Q
K
K
D
T
A
V
R
G
L
A
R
I
V
Q
V
G
E
N
K
T
L
F
D
I
------
T
V
N
G
V
P
E
A
G
N
Y
----
H
A
S
I
H
E
--
K
G
D
----
V
----
S
K
-------
G
V
E
S
T
G
----------------
K
V
W
---------------
H
K
F
---
D
E
P
I
E
C
F
N
E
S
D
L
--
G
K
N
L
Y
S
G
--
K
T
F
L
-------
S
A
P
L
P
T
W
Q
L
--
I
G
R
S
F
V
I
S
K
S
L
N
H
P
E
N
E
----------
P
S
S
V
K
D
Y
S
F
--
L
G
V
I
A
R
S
A
G
V
W
---------------------------------------
17
PsiBlast_PDB
49.12
25%
-43
- C5 -
1AQL
1
CEL_BOVIN
A:
[132-258]
------------------------------------------
T
-
R
G
N
----------------
V
-
I
V
V
T
-
F
N
Y
-
R
V
G
P
L
-
G
-
F
L
S
T
G
D
S
---
N
L
P
G
N
Y
G
--
L
W
D
Q
H
M
A
I
A
W
V
K
----
R
N
I
E
-
A
F
G
G
D
P
-
D
N
I
T
L
F
G
------
E
S
A
G
G
A
S
V
S
L
Q
T
L
----
S
-
P
Y
N
K
G
L
I
K
R
A
I
S
Q
-
S
G
V
G
L
C
-
P
W
A
I
Q
Q
D
P
L
F
W
A
--
K
R
I
A
E
K
V
G
C
P
---
V
D
D
T
S
K
M
A
G
C
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
45.50
19%
-2
- C- -
2AUA
-
?
A:
[-11-195]
-------------------
N
E
T
----
E
F
Y
A
----------
Y
H
I
V
T
R
K
----------------
K
M
H
I
G
Q
M
I
P
F
N
K
N
Q
H
N
-
T
-
L
Y
H
F
F
F
E
---
R
-
E
Q
L
N
A
--
N
G
E
D
G
I
Q
I
--
L
N
----
N
H
Y
K
-
N
D
E
L
H
------
I
N
N
------
E
N
A
-----
K
V
V
I
S
----
Y
M
D
Q
T
I
R
A
A
R
E
T
I
V
E
M
V
R
L
Q
E
F
P
E
Y
P
S
--------------------------------------------
R
L
S
C
------
L
Y
A
A
K
S
Y
E
D
A
L
----
K
W
K
A
L
F
D
S
Y
N
R
E
V
---------------------------------------------------------------
L
Q
I
V
K
L
R
V
I
G
S
S
F
E
G
D
G
N
L
L
---------------
P
K
E
D
G
I
P
--
F
S
Q
K
I
E
Q
A
R
K
Y
W
K
G
N
N
E
LPE-------
L
L
I
N
G
E
I
E
V
--
V
E
I
I
D
D
F
-------------------------------------------
13
PsiBlast_PDB
40.26
33%
-104
- C5 -
3JVI
-
?
A:
[116-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
T
T
-
I
K
T
T
E
V
P
D
------
P
Y
--
G
E
K
G
F
H
R
----
V
I
D
I
L
E
D
A
C
E
N
L
I
I
K
L
----
E
E
-------
G
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
40.04
30%
63
- C4 -
3LMG
1
ERBB3_HUMAN
A:
[26-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
------
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
15
PsiBlast_PDB
39.65
33%
-98
- C5 -
3ILY
-
?
A:
[112-156]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
T
T
-
I
K
T
T
E
V
P
D
------
P
Y
--
G
E
K
G
F
H
R
----
V
I
D
I
L
E
D
A
C
E
N
L
I
I
K
L
----
E
E
-------
G
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
39.17
30%
79
- C4 -
3KEX
1
ERBB3_HUMAN
A:
[8-72]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
S
G
R
---
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
16
PsiBlast_PDB
38.85
33%
-56
- C5 -
3JS5
1
?
A:
[133-176]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
T
T
-
I
K
T
T
E
V
P
D
------
P
Y
Y
G
G
E
K
G
F
H
R
----
V
I
D
I
L
E
D
A
C
E
N
L
I
I
K
L
----
E
E
-------
G
K
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
38.60
30%
100
- C4 -
4OTW
1
A:
[8-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
S
G
R
---
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
4
PsiBlast_PDB
37.24
30%
89
- C4 -
4RIY
2
ERBB3_HUMAN
A:
[8-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
S
G
R
---
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
7
PsiBlast_PDB
37.14
30%
94
- C4 -
4RIW
1
ERBB3_HUMAN
A:
[8-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
S
G
R
---
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
5
PsiBlast_PDB
37.13
30%
87
- C4 -
4RIX
1
ERBB3_HUMAN
A:
[8-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
F
K
E
----
T
E
L
R
K
L
K
VL
G
S
G
V
F
G
T
V
H
K
--------
G
V
W
I
P
E
G
---------------
E
S
I
---
K
I
P
V
C
I
K
V
I
E
D
K
S
G
R
---
Q
S
F
--
Q
A
V
T
-------
D
H
M
L
-----------------------------------------------------------------------------------------------
14
PsiBlast_PDB
36.60
33%
-59
- C5 -
3IDO
1
?
A:
[133-177]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
C
T
T
-
I
K
T
T
E
V
P
D
------
P
Y
Y
G
G
E
K
G
F
H
R
----
V
I
D
I
L
E
D
A
C
E
N
L
I
I
K
L
----
E
E
-------
G
K
L
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
35.64
27%
-92
- C5 -
1DML
-
DPOL_HHV1A
B:
[1200-1235]
--------------------------------------------------------------------
D
-
D
V
A
A
R
L
R
A
A
-
G
-
F
G
A
V
------------
G
--
A
G
A
T
A
E
E
T
--
R
R
----
M
L
H
R
-
A
F
D
T
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
35.20
26%
-275
- C5 -
2H3O
-
?
A:
[41-67]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
Y
L
-------
D
Y
V
L
L
P
A
L
A
--
I
F
I
G
L
T
I
Y
A
I
Q
R
K
R
Q
-------------------------------------------------------------------------
2
PsiBlast_PDB
34.61
34%
-15
- C5 -
1B5E
-
DCHM_BPT4
A:
[50-90]
------------------------------------------------------------------------------------------------------
G
A
L
N
D
E
Y
--
I
Q
----
R
E
L
E
-
W
Y
K
S
K
S
L
F
V
K
D
I
P
G
------
E
T
P
-----
K
I
W
Q
Q
----
V
-
A
S
S
K
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
33.51
34%
9
- C5 -
1B49
-
DCHM_BPT4
A:
[50-90]
------------------------------------------------------------------------------------------------------
G
A
L
N
D
E
Y
--
I
Q
----
R
E
L
E
-
W
Y
K
S
K
S
L
F
V
K
D
I
P
G
------
E
T
P
-----
K
I
W
Q
Q
----
V
-
A
S
S
K
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
32.96
34%
10
- C5 -
1B5D
-
DCHM_BPT4
A:
[50-90]
------------------------------------------------------------------------------------------------------
G
A
L
N
D
E
Y
--
I
Q
----
R
E
L
E
-
W
Y
K
S
K
S
L
F
V
K
D
I
P
G
------
E
T
P
-----
K
I
W
Q
Q
----
V
-
A
S
S
K
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------