@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu27469: (2016-07-13 )
MLICPNCKSKDIGKIGVNQYYCWGCFIELTVAKGKIATHQVEEDGTLSSLDDLFSEDERSINF
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10..---------------.--------------.----------.-...----.20...--------.--....30..--..----....40.---.......50........60..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLICPNCKSK-DI---------------G--------------K----------I-GVN----
Q
Y
Y
C
W
G
--------
C
--
F
I
E
L
T
VAK--G
K
----
I
A
T
H
Q
VE---EDGT
L
S
S
L
D
D
L
F
S
E
D
ERSINF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
69.42
16%
0
- C- -
1AZP
-
A:
[1--24]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
V
K
V
K
F
K
Y
K
G
E
E
K
-
E
V
---------------
D
--------------
T
----------
S
-
K
I
K
----
K
V
W
R
V
G
--------
K
--
M
V
S
F
T
Y
D
D
NG-
K
----
T
G
R
G
A
V
S
---
E
K
D
A
P
K
E
L
L
D
M
L
A
R
A
E
R
E
K
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
64.49
20%
-82
- C4 -
2AKL
1
?
A:
[28-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
P
C
P
Q
C
N
S
E
-
Y
T
---------------
Y
--------------
E
----------
D
-
G
-
A
----
L
L
V
C
P
E
--------
C
--
A
H
E
W
S
P
N
E
--
A
A
TASD
D
G
K
V
I
K
D
---
S
V
G
N
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
63.32
24%
43
- C4 -
4ESJ
6
T2D1_STRR6
A:
[2-257]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHMELHFN
L
E
L
V
E
T
Y
KSNSQ
K
A
R
I
L
T
E
D
W
V
Y
R
Q
S
Y
C
P
N
C
G
N
N
-
P
L
---------------
N
--------------
H
----------
F
-
P
V
A
----
D
F
Y
C
N
H
--------
C
--
S
E
E
F
E
L
K
S
--
K
K
----
G
N
F
S
S
T
I
---
N
D
G
A
Y
A
T
M
M
K
R
V
Q
A
D
N
N
P
-
N
F
F
F
L
T
Y
T
KNFEVN
N
F
L
V
LPKQFVTPKS
I
I
Q
R
KPLAG
W
I
G
C
N
I
D
LSQVPSKGRIFLVQDGQVRD
P
E
K
V
T
K
E
F
K
Q
G
LFLRKSS
L
S
S
R
G
W
T
I
E
I
L
N
C
I
D
K
IEGSEFT
L
E
D
M
Y
R
F
E
S
D
L
K
N
I
F
VKNNH
I
K
E
K
I
R
Q
Q
L
Q
I
L
R
D
K
EIIEFKGRG
K
Y
R
K
L-----------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
63.16
24%
-126
- C4 -
2HF1
1
Y3345_CHRVO
A:
[9-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
C
P
L
C
K
G
P
-
L
V
---------------
F
--------------
D
----------
K
-
S
K
D
----
E
L
I
C
K
G
--------
D
--
R
L
A
F
P
I
K
D
--
G
-----
I
P
M
M
L
E
S
---
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
62.62
22%
-76
- C2 -
4NQA
6
NR1H2_HUMAN
I:
[5-389]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGPAPKMLG
H
E
L
C
R
V
C
G
D
K
-
A
S
---------------
G
-------------------------
F
-
H
Y
N
----
V
L
S
C
E
G
--------
C
KG
F
F
R
R
S
V
V
R
--
G
G
----
A
R
R
Y
A
C
R
---
G
G
G
T
C
Q
-
M
D
A
F
M
R
R
K
C
Q
Q
C
R
L
RKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDV
13
HHSearch
61.54
27%
-92
- C4 -
4ESJ
1
T2D1_STRR6
A:
[35-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
Y
C
P
N
C
G
N
N
-
P
L
---------------
N
--------------
H
----------
F
----PVA-
D
F
Y
C
N
H
--------
C
--
S
E
E
F
E
L
K
S
--
K
K
----
G
N
F
S
S
T
I
---
N
D
G
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
60.05
21%
56
- C3 -
1ZJC
3
?
A:
[6-418]
N
Y
K
E
K
L
Q
Q
Y
A
E
L
L
V
KVGMNVQPK
Q
P
V
F
I
R
S
S
VET
L
E
L
T
H
L
I
V
E
E
A
Y
H
C
GA
S
D
V
R
V
V
Y
S
D
P
T
L
K
R
L
K
F
E
N
ES
V
E
H
F
A
NHEIK
S
Y
D
V
E
A
R
M
D
Y
V
K
R
G
A
A
N
L
A
L
I
S
E
DPDLMDGID
S
Q
K
L
Q
A
F
Q
Q
Q
N
A
R
A
F
K
G
Y
M
E
S
V
Q
K
NQ
F
P
W
V
V
A
A
F
P
S
K
A
W
A
K
R
V
Y
PELS
V
E
E
A
Y
I
K
F
I
D
E
V
F
D
I
V
RIDGND
P
V
E
N
W
R
Q
H
I
A
N
L
S
V
Y
A
Q
K
L
Q
Q
K
NYH
A
L
H
Y
V
S
EG
T
D
L
T
V
G
L
A
KN
H
I
W
E
D
A
T
S
Y
V
NGK
E
Q
A
F
I
ANIPTEE
V
F
T
A
P
D
R
N
R
V
-
D
----------------
G
--------------
Y
----------
V
-
T
N
K
----
L
P
L
S
Y
N
GTII----
D
--
Q
F
K
L
M
F
K
D
--
G
E
----
I
I
D
F
S
A
E
---
K
G
--
E
A
V
L
K
D
L
I
N
T
D
E
G
S
R
R
L
G
E
V
A
L
V
P
DDS
P
I
S
N
R
NTIFYN
T
L
F
D
E
N
A
A
C
H
L
A
I
G
SAYAFNIQGGTEMT
V
E
E
K
I
A
S
G
L
N
D
S
N
V
H
V
D
F
M
I
G
S
SD
L
T
I
Y
G
I
F
EDG
S
K
E
L
VFENGNWASTF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
52.33
22%
-167
- C4 -
2JRP
1
?
A:
[2-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
T
C
P
V
C
H
H
----------------------------------
A
----------
L
-
E
R
N
GD--
T
A
H
C
E
T
--------
C
--
A
K
D
F
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
51.44
22%
-117
- C4 -
2JS4
-
Y2007_BORBR
A:
[9-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
C
P
V
C
K
G
R
-
L
E
---------------
F
--------------
Q
----------
R
-
A
Q
A
----
E
L
V
C
N
A
--------
D
--
R
L
A
F
P
V
R
D
--
G
-----
V
P
I
M
L
E
A
---
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
49.70
26%
0
- C- -
1VQ8
-
RL37A_HALMA
Z:
[28-62]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
A
C
P
N
C
G
E
D
-
R
V
---------------
D
--------------
R
----------
Q
-
G
T
G
----
I
W
Q
C
S
Y
--------
C
--
D
Y
K
F
T
G
G
S
--
Y
K
----
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
48.30
14%
-4
- C3 -
1T4L
-
RNT1_YEAST
B:
[364-453]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
L
D
M
N
A
K
R
Q
-
L
Y
---------------
S
--------------
L
----------
I
-
G
Y
A
SLRL
H
Y
V
T
V
K
KPTAVDPN
S
--
I
V
E
C
R
V
G
D
--
G
T
----
V
L
G
T
G
V
G
RNI
K
I
A
G
I
R
A
A
E
N
A
L
R
D
K
K
M
L
D
F
Y
AKQRAAIPRSES-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
48.01
23%
-177
- C4 -
1PFT
1
TF2B_PYRFU
A:
[6-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
C
P
A
C
E
S
A
E
L
I
---------------
Y
--------------
D
----------
P
-
E
R
G
----
E
I
V
C
A
K
--------
C
--
G
--
Y
V
I
E
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
47.95
21%
21
- C4 -
3GA8
2
MQSA_ECOLI
A:
[3-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
C
P
V
C
H
Q
G
-
E
M
V
--------------
S
G
I
K
D
I
P
Y
T
F
RG
R
K
T
V
----------
L
K
G
I
H
----
G
L
Y
C
V
H
--------
C
--
E
E
S
I
M
N
K
E
--
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
47.88
21%
-6
- C4 -
3O9X
1
MQSA_ECOLI
A:
[2-50]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
K
C
P
V
C
H
Q
G
-
E
M
V
S
G
I
K
D
I
P
Y
T
F
RG
R
K
T
--------------
V
----------
L
K
G
I
H
----
G
L
Y
C
V
H
--------
C
--
E
E
S
I
M
N
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
47.43
21%
-116
- C4 -
2PK7
-
Y1779_PSEF5
A:
[9-50]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
C
P
I
C
K
G
P
-
L
K
---------------
L
--------------
S
----------
A
-
D
K
T
----
E
L
I
S
K
G
--------
A
--
G
L
A
Y
P
I
R
D
--
G
-----
I
P
V
M
L
E
S
---
E
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
46.26
20%
-67
- C4 -
1VD4
1
A:
[15-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
C
P
V
C
S
S
T
-
F
T
---------------
D
L
E
A
N
Q
L
F-------
D
----------
P
-
M
T
G
----
T
F
R
C
T
F
--------
C
--
H
T
E
V
E
E
D
E
--
S
A
----
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
46.24
17%
-126
- C4 -
2JR6
-
Y874_NEIMA
A:
[9-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
C
P
V
T
K
G
R
-
L
E
---------------
Y
--------------
H
----------
Q
-
D
K
Q
----
E
L
W
S
R
Q
--------
A
--
K
L
A
Y
P
I
K
D
--
G
-----
I
P
Y
M
L
E
N
---
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.53
17%
-122
- C4 -
2JNY
-
?
A:
[11-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
C
P
K
D
K
G
P
-
L
R
---------------
Y
--------------
L
----------
E
-
S
E
Q
----
L
L
V
N
E
R
--------
L
--
N
L
A
Y
R
I
D
D
--
G
-----
I
P
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
44.32
16%
-125
- C4 -
1DL6
1
TF2B_HUMAN
A:
[12-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
T
C
P
N
H
P
D
A
-
I
L
V
--------------
E
--------------
D
----------
Y
-
R
A
G
----
D
M
I
C
P
E
--------
C
--
G
L
V
V
G
D
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
44.07
19%
-98
- C4 -
1QYP
1
A:
[16-56]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
P
K
C
G
N
D
-
T
A
---------------
Y
--------------
W
W
E
M
Q
T
R
AGDE
P
-
S
T
I
----
F
Y
K
C
T
K
--------
C
--
G
H
T
W
R
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------