@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu28070: (2016-07-14 )
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTACLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVIAAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIISFYIKMALG
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------.........10........20........30......--..40...--.....50------------..--.....------------..60-........70........80........90........100.......110.......120.......130.......-----140.......150.......160.......170.......180.......190..---------.....200......----.210.......220.......230.......240---.......----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------M
L
S
I
L
F
I
F
G
L
I
L
G
S
F
YYTAGC
R
I
P
L
H
L
S
I
IAPRSSCP--
F
C
RRTL
T
--
P
A
E
L
I
P
-------------
I
L
--
S
F
L
FQ------------KG
K
C
-
K
S
CG
H
R
I
S
F
MY
P
A
A
E
L
V
T
A
C
L
F
A
A
A
G
I
R
F
G
I
S
L
E
L
F
P
A
V
V
F
I
S
L
L
I
I
V
A
V
T
D
I
H
F
M
L
IPN
R
I
L
I
F
F
L
P
F
L
A
A
A
R
L
I
S
P
-----
L
D
S
W
Y
A
G
L
L
G
A
A
A
G
F
L
F
L
A
V
I
A
A
I
THGGVGGG
D
I
K
L
F
A
V
I
G
F
V
L
G
V
K
M
L
A
A
A
F
F
F
---------
S
V
L
I
G
A
L
Y
G
A
A
A
V
L
----
T
G
R
LAKRQPLPFA
P
A
I
A
A
G
S
I
L
A
Y
L
YG
D
S
I
I
S
F
----
Y
I
K
MALG----------------------------------------------------------------------------
31
Fugue
64.61
15%
-107
- C3 -
1L0V
5
FRDB_ECOLI
B:
[1-243]
--------------------------------------------------------------------------------------------------------------------------------------
A
E
M
K
N
L
K
I
E
V
V
R
---
Y
N
P
E
V
D
T
A
P
H
S
A
F
Y
E
V
P
Y
D
A
T
T
--
S
L
L
D
A
L
G
Y
I
K
D
N
L
A
P
-------------
D
L
--
S
Y
R
W
S
CR----------
M
A
I
C
-
G
S
C
G
M
M
V
N
-----
N
V
P
K
L
A
C
K
T
F
L
R
D
Y
T
D
G
M
K
V
E
A
L
A
N
F
P
I
E
R
D
L
V
V
---
D
M
T
H
F
I
E
S
L
E
A
I
K
P
Y
I
I
G
N
S
R
T
A
D
Q
G
T
N
-----
I
Q
T
--------
P
A
Q
M
A
K
Y
H
Q
F
S
G
C
I
N
C
G
L
C
Y
A
A
C
P
Q
F
G
L
N
P
E
F
I
G
P
A
A
I
T
L
A
H
R
Y
N
E
DSRDHGK
K
E
R
M
A
Q
L
N
S
Q
N
G
V
W
SCTF
V
G
Y
C
S
E
V
C
P
K
H
V
D
P
A
A
A
I
Q
Q
G
K
V
E
S
S
K
D
F
L
I
A
T
-------
L
K
P
R
----------------------------------------------------------------------------
27
Fugue
62.21
23%
-39
- C5 -
4D6W
1
GLYCO_CHAV
A:
[1-415]
Y
L
S
I
A
F
PENTKLD
W
K
P
V
T
K
N
T
R
Y
C
PPG
L
Q
E
E
S
F
L
S
S
T
P
IGATPSKS
D
G
F
L
C
H
A
A
K
W
V
T
T
C
D
F
R
WYG
P
K
Y
I
T
H
S
I
H
N
I
K
P
T
R
S
D
C
D
T
A
L
A
S
Y
K
S
GTLVSLGFPPESCGYASV
T
D
S
E
F
L
V
I
M
I
T
P
H
H
V
G
V
DDYRG
H
W
V
D
P
L
F
V
G
G
E
C
D
Q
S
Y
-----
C
D
T
I
H
N
S
S
V
W
I
P
A
D
Q
T
K
KN
I
C
G
Q
S
F
T
--
P
L
T
V
T
V
-------------
A
Y
D
K
T
K
E
I
A
------------
A
G
G
I
-
V
F
K
S
K
Y
H
S
H
M
E
G
A
----
R
T
C
R
L
S
Y
C
G
-
R
N
G
I
K
---
F
P
N
G
E
W
V
S
L
-------
D
V
K
T
R
I
Q
E
K
H
L
L
P
L
F
K
E
C
P
A
G
T
E
V
R
S
T
-----
L
Q
S
D
G
A
Q
V
L
T
S
E
I
Q
R
I
L
D
Y
S
L
C
Q
N
T
W
D
K
V
E
R
K
E
-------------
P
L
S
P
L
D
L
S
Y
------------------------------
L
A
S
K
S
P
---------
G
K
G
L
A
Y
T
V
I
N
G
T
L
S
F
A
H
T
R
Y
V
R
M
W
I
D
GPVLKEPKGKRESPSGISSDIWT
Q
W
F
K
Y
GD
M
E
I
G
P
NGLLKTAG
G
Y
K
F
P
W
H
L
I
G
M
G
I
V
D
N
E
L
H
E
L
S
E
A
N
P
L
D
H
P
Q
L
P
3
HHSearch
44.92
23%
-208
- C5 -
3S0X
-
FLAK_METM6
A:
[503-595]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
I
I
G
A
L
G
L
I
I
A
S
V
Q
D
----
E
I
E
D
Y
I
W
I
F
L
A
V
F
G
V
L
F
A
I
Y
S
S
I
T
L
LD
Y
S
I
L
I
N
S
I
S
G
F
V
I
C
F
I
L
---
G
Y
M
M
F
L
S
G
I
G
G
G
D
G
K
M
L
I
G
L
G
A
L
V
P
K
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
43.64
20%
-214
- C5 -
4YB9
-
GTR5_BOVIN
D:
[320-389]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
G
A
V
N
V
L
I
T
V
C
A
I
F
V
V
E
L
M
G
R
R
F
L
L
---------
L
L
G
F
S
V
C
F
T
A
C
C
V
L
----
T
G
A
L
A
L
Q
D
V
I
S
W
M
P
Y
V
S
I
A
C
V
I
S
Y
V
I
G
H
A
L
------------------------------------------------------------------------------------------
13
HHSearch
37.50
28%
-96
- C6 -
2K5C
1
?
A:
[8-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
C
P
--
I
C
G
S
P
L
K
--
W
E
E
L
I
E
E
M
LIIE-------
N
F
--
E
E
I
V
K
D
R
E
R
F
L
A
Q
V
E
E
F
V
F
K
C
-
P
V
C
G
E
E
F
Y
G
K
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
35.30
36%
-83
- C6 -
1TWF
1
RPAB4_YEAST
L:
[28-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Y
I
C
A
--
E
C
S
S
K
L
S
--
L
S
R
-----------------------
T
D
------------
A
V
R
C
-
K
D
C
G
H
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
34.21
30%
-118
- C1 -
2HQH
1
CLIP1_HUMAN
E:
[4-11]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
Y
C
E
--
I
C
E
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
33.92
19%
-94
* C7 *
4QIW
-
RPOP_THEKO
P:
[8-35]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
A
--
K
C
G
K
E
V
E
--
L
D
L
A
T
---------------------
A
R
------------
E
V
R
C
-
P
Y
C
G
S
K
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
32.84
24%
-92
- C6 -
5FMF
-
T2EA_YEAST
R:
[120-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
Y
M
C
P
--
I
C
L
T
K
Y
T
--
Q
L
E
A
V
Q
-------------
L
L
--
N
F
D
R
T
------------
E
F
L
C
-
S
L
C
D
E
P
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.33
25%
-92
- C6 -
3WWL
1
LYSW_THET8
A:
[3-34]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
C
P
--
E
C
G
A
E
L
R
--
L
E
N
P
E
--------------------
L
G
E
------------
L
V
V
C
-
E
D
C
G
A
E
L
E
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
31.74
20%
-66
- C6 -
1VD4
1
A:
[13-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
F
K
C
P
--
V
C
S
S
T
F
T
--
D
L
E
A
N
Q
-------------
L
F
--
D
P
M
T
G
------------
T
F
R
C
-
T
F
C
H
T
E
V
E
E
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
31.61
39%
-174
- C5 -
3FVY
-
DPP3_HUMAN
A:
[7-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
I
L
-
P
N
D
I
G
V
S
S
L
D
C
R
E
A
F
R
L
L
S
P
-----
T
E
R
L
Y
A
Y
H
L
S
R
A
A
W
Y
G
G
L
A
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
31.07
28%
-72
- C6 -
3H0G
-
RPAB4_SCHPO
L:
[20-48]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
L
C
A
--
D
C
G
A
R
N
T
--
I
Q
A
-----------------------
K
E
------------
V
I
R
C
-
R
E
C
G
H
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
31.06
25%
-116
- C6 -
2K4X
1
RS27A_THEAC
A:
[15-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
K
H
R
F
C
P
--
R
C
G
P
G
V
F
--
L
A
E
----------------------
H
A
D
------------
R
Y
S
C
-
G
R
C
G
Y
T
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
30.99
24%
-65
- C6 -
5FLM
1
RPAB4_BOVIN
L:
[15-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
Y
I
C
G
--
E
C
H
T
E
N
E
--
I
K
S
-----------------------
R
D
------------
P
I
R
C
-
R
E
C
G
Y
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
30.73
30%
-47
- C7 -
4AYB
1
?
P:
[5-33]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
C
G
--
K
C
W
K
T
F
T
--
D
E
Q
L
K
--------------------
V
L
P
------------
G
V
R
C
-
P
Y
C
G
Y
K
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
30.00
26%
-128
* C6 *
1I50
1
RPAB4_YEAST
L:
[25-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
L
K
Y
I
C
A
--
E
C
S
S
K
L
S
--
L
S
R
T
D
A
-------------
V
----------------------
R
C
-
K
D
C
G
H
R
I
L
L
K
A
R
T
K
R
L
V
Q
F
E
A
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
29.80
16%
-21
- C4 -
1IYM
2
A:
[1-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
M
D
D
G
V
E
C
A
--
V
C
L
A
E
L
E
--
D
G
E
E
A
R
F
L
PRCGHGFH
A
E
C
V
D
--
M
W
L
G
S
------------
H
S
T
C
-
P
L
C
R
L
T
V
V
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
29.43
19%
-112
- C6 -
2HF1
1
Y3345_CHRVO
A:
[7-37]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
L
V
C
P
--
L
C
K
G
P
L
V
--
F
D
K
----------------------
S
K
D
------------
E
L
I
C
-
K
G
D
R
L
A
F
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
27.72
40%
7
- C2 -
1TER
1
TERT_APIME
A:
[1-21]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
C
N
---
C
N
R
I
I
I
--
P
----------------------------------------
H
M
C
W
K
K
C
G
K
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------