@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu31010: (2016-07-21 )
MTMPIIMIIGVVFFLLIALIAVFITKYRTAGPDEALIVTGSYLGNKNVHVDEGGNRIKIVRGGGTFVLPVFQQAEPLSLLSSKLDVSTPEVYTEQGVPVMADGTAIIKIGGSIGEIATAAEQFLGKSKDDREQEAREVLEGHLRSILGSMTVEEIYKNREKFSQEVQRVASQDLAKMGLVIVSFTIKDVRDKNGYLESLGKPRIAQVKRDADIATAEADKETRIKRAEADKDAKKSELERATEIAEAEKINQLKMAEFRREQDTAKANADQAYDLETARARQQVTEQEMQVKIIERQKQIELEEKEILRRERQYDSEVKKKADADRYSVEQSAAAEKAKQLAEADAKKYSIEAMAKAEAEKVRIDGLAKAEAEKAKGETEAEVIRLKGLAEAEAKEKIAAAFEQYGQAAIFDMIVKMLPEYAKQAAAPLSNIDKITVVDTGGSGESSGANKVTSYATNLMSSLQESLKASSGIDVKEMLENFSGKGNVKQSINELTNEIKEAKTIQKSE
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270...---....280.......290......-.300.......310.......320-.......330......---------.340..----.....350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MTM
P
I
I
M
I
I
G
V
V
F
F
L
L
I
A
L
I
A
V
F
I
T
K
YRTAGPD
E
A
L
I
V
T
G
SYLGNK
N
V
H
VDEGG
N
R
I
K
I
V
RGG
G
T
F
V
L
P
VFQQA
E
P
L
S
L
L
S
S
KLDVSTPEVYTEQG
V
P
V
MAD
G
T
A
I
I
K
IGGSI
G
E
I
A
T
A
A
E
Q
F
LGKSKD
D
R
E
Q
E
A
R
E
V
L
E
G
H
L
R
S
I
L
G
S
M
T
V
E
E
I
Y
K
N
R
E
K
F
S
Q
E
V
Q
R
V
A
S
Q
D
L
A
KM
G
L
V
I
V
S
F
T
I
KDVRDKN
G
Y
L
E
SLGK
P
R
I
A
Q
V
KRDADIATAEA
D
K
E
T
R
IKRAEADK
D
A
K
K
S
E
L
E
R
A
T
E
I
A
E
A
E
K
I
N
Q
L
K
M
A
E
F
R
R
E
QDTAKANADQAYD
L
---
E
T
A
R
A
R
Q
Q
V
T
E
Q
E
M
Q
V
K
I
I
E
R
Q
K
-QIE
L
E
E
K
E
I
L
R
R
E
R
Q
Y
D
S
E
V
K
K
KA-DADRY
S
V
E
Q
S
A
A
A
E
K
A
---------
K
Q
L
A
E
A
----
D
A
K
K
Y
S
I
E
A
M
A
KAEA
E
K
V
R
IDGLAK
A
E
A
E
KAKGETE
A
E
V
I
R
LKGL
A
E
A
E
A
K
E
K
I
A
A
A
F
E
QYG
Q
A
A
I
F
D
M
I
V
K
M
L
P
E
Y
A
K
Q
AAAPLSNI
D
K
I
T
V
V
DTGGSGESSGA
N
K
V
T
S
Y
A
T
N
L
M
S
S
L
Q
E
S
LKASSGI
D
V
K
E
M
L
E
NFSGKG
N
V
K
Q
S
I
N
E
L
T
N
E
I
K
E
A
K
TIQKSE
1
PsiBlast_PDB
76.32
50%
-153
- C3 -
1WIN
-
FLOT2_MOUSE
A:
[23-134]
-----------------------------------------------------------------------------------------
D
V
E
T
A
E
G
V
A
L
T
V
T
G
V
A
Q
V
K
I
M
T
E
K
E
L
L
A
V
A
C
E
Q
F
L
G
K
N
V
Q
D
I
K
N
V
V
L
Q
T
L
E
G
H
L
R
S
I
L
G
T
L
T
V
E
Q
I
Y
Q
D
R
D
Q
F
A
K
L
V
R
E
V
A
A
P
D
V
G
R
M
G
I
E
I
L
S
F
T
I
K
D
V
Y
D
K
V
D
Y
L
S
S
L
G
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
HHSearch
74.57
42%
-134
- C3 -
1WIN
-
FLOT2_MOUSE
A:
[2-141]
-------------------------------------------------------------------
S
S
G
-
S
S
G
Q
R
I
S
L
E
I
M
T
L
Q
P
R
C
E
D
V
E
T
A
E
G
V
A
L
T
V
T
G
V
A
Q
V
K
I
M
T
E
K
E
L
L
A
V
A
C
E
Q
F
L
G
K
N
V
Q
D
I
K
N
V
V
L
Q
T
L
E
G
H
L
R
S
I
L
G
T
L
T
V
E
Q
I
Y
Q
D
R
D
Q
F
A
K
L
V
R
E
V
A
A
P
D
V
G
R
M
G
I
E
I
L
S
F
T
I
K
D
V
Y
D
K
V
D
Y
L
S
S
L
G
K
T
Q
T
S
G
P
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
73.70
41%
-135
- C3 -
1WIN
-
FLOT2_MOUSE
A:
[1-143]
-------------------------------------------------------------------
G
S
S
G
S
S
G
Q
R
I
S
L
E
I
M
T
L
Q
P
R
C
E
D
V
E
T
A
E
G
V
A
L
T
V
T
G
V
A
Q
V
K
I
M
T
E
K
E
L
L
A
V
A
C
E
Q
F
L
G
K
N
V
Q
D
I
K
N
V
V
L
Q
T
L
E
G
H
L
R
S
I
L
G
T
L
T
V
E
Q
I
Y
Q
D
R
D
Q
F
A
K
L
V
R
E
V
A
A
P
D
V
G
R
M
G
I
E
I
L
S
F
T
I
K
D
V
Y
D
K
V
D
Y
L
S
S
L
G
K
T
Q
T
S
G
P
S
S
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.89
23%
-102
- C3 -
3BK6
-
PSTOM_PYRHO
A:
[56-206]
---------------------------------------------------------------------
I
F
E
K
A
V
I
V
D
L
R
T
Q
V
L
D
V
P
V
Q
E
T
I
T
K
D
N
V
P
V
R
V
N
A
V
V
Y
F
R
V
V
D
P
V
K
A
V
T
Q
V
K
N
Y
I
M
A
T
S
---------
Q
I
S
Q
T
T
L
R
S
V
I
G
Q
A
H
L
D
E
L
L
S
E
R
D
K
L
N
M
Q
L
Q
R
I
I
D
E
A
T
D
P
W
G
I
K
V
T
A
V
E
I
K
D
V
E
L
P
A
G
M
Q
K
A
M
A
R
Q
A
E
A
E
R
E
R
R
A
R
I
T
L
A
E
A
E
R
Q
A
A
E
K
L
R
E
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
64.32
23%
-106
- C3 -
3BK6
-
PSTOM_PYRHO
A:
[56-194]
---------------------------------------------------------------------
I
F
E
K
A
V
I
V
D
L
R
T
Q
V
L
D
V
P
V
Q
E
T
I
T
K
D
N
V
P
V
R
V
N
A
V
V
Y
F
R
V
V
D
P
V
K
A
V
T
Q
----
V
K
-----
N
Y
I
M
A
T
S
Q
I
S
Q
T
T
L
R
S
V
I
G
Q
A
H
L
D
E
L
L
S
E
R
D
K
L
N
M
Q
L
Q
R
I
I
D
E
A
T
D
P
W
G
I
K
V
T
A
V
E
I
K
D
V
E
L
P
A
G
M
Q
K
A
M
A
R
Q
A
E
A
E
R
E
R
R
A
R
I
T
L
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
59.03
26%
0
- C- -
1QVR
2
CLPB_THET8
A:
[346-527]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
Y
E
V
H
H
G
V
R
I
S
D
S
A
I
I
---
A
A
A
T
L
S
H
R
Y
I
T
E
R
R
L
P
D
K
A
I
D
L
I
D
E
A
A
A
R
L
R
M
A
L
E
S
A
P
E
E
I
D
A
L
E
R
K
K
L
Q
L
E
I
E
-
R
E
A
L
K
K
E
K
D
P
D
S
Q
E
R
L
K
A
I
E
A
E
I
A
K
L
T
E
E
I
A
K
L
R
A
E
W
E
R
E
R
E
I
L
R
K
L
R
E
A
Q
H
R
L
D
E
V
R
R
E
I
E
-
L
A
E
R
Q
Y
D
L
N
R
A
A
E
L
R
Y
G
E
L
P
K
L
E
A
E
V
E
A
L
S
E
K
L
R
G
-------------------------------------------------------------------------------------------------------------------------
43
HHSearch
57.34
18%
-88
- C3 -
4FVG
2
STOM_MOUSE
A:
[14-122]
----------------------------------------------------------------------------
V
D
M
R
T
I
S
F
D
I
P
P
Q
E
V
L
T
K
D
S
V
T
I
S
V
D
G
V
V
Y
Y
R
V
Q
N
A
T
L
A
V
----
A
N
I
T
-----
N
A
D
S
A
T
R
L
L
A
Q
T
T
L
R
N
A
L
G
T
K
N
L
S
Q
I
L
S
D
R
E
E
I
A
H
H
M
Q
S
T
L
D
D
A
T
D
D
W
G
I
K
V
E
R
V
E
I
K
D
V
K
L
P
V
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
55.65
19%
-95
- C3 -
4FVG
2
STOM_MOUSE
A:
[14-118]
----------------------------------------------------------------------------
V
D
M
R
T
I
S
F
D
I
P
P
Q
E
V
L
T
K
D
S
V
T
I
S
V
D
G
V
V
Y
Y
R
V
Q
N
A
T
L
A
V
A
N
I
T
---------
N
A
D
S
A
T
R
L
L
A
Q
T
T
L
R
N
A
L
G
T
K
N
L
S
Q
I
L
S
D
R
E
E
I
A
H
H
M
Q
S
T
L
D
D
A
T
D
D
W
G
I
K
V
E
R
V
E
I
K
D
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
54.97
16%
-133
- C3 -
2RPB
-
?
A:
[62-174]
------------------------------------------------------------------------
G
S
D
H
V
D
L
R
E
H
V
I
D
V
P
P
Q
E
V
I
C
K
D
N
V
V
V
T
V
D
A
V
V
Y
Y
Q
V
I
D
P
---------
V
K
A
V
Y
N
V
S
D
F
L
M
A
I
V
K
L
A
Q
T
N
L
R
A
I
I
G
E
M
E
L
D
E
T
L
S
G
R
D
I
I
N
A
R
L
R
E
E
L
D
K
I
T
D
R
W
G
V
K
I
T
R
V
E
I
Q
R
I
D
P
P
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.86
20%
-108
- C3 -
4FVF
8
STOM_MOUSE
A:
[16-113]
-----------------------------------------------------------------------------------
F
D
I
P
P
Q
E
V
L
T
K
D
S
V
T
I
S
V
D
G
V
V
Y
Y
R
V
Q
N
A
T
L
A
V
A
N
I
T
---------
N
A
D
S
A
T
R
L
L
A
Q
T
T
L
R
N
A
L
G
T
K
N
L
S
Q
I
L
S
D
R
E
E
I
A
H
H
M
Q
S
T
L
D
D
A
T
D
D
W
G
I
K
V
E
R
V
E
I
K
D
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
HHSearch
51.73
17%
-137
- C3 -
2RPB
-
?
A:
[64-174]
--------------------------------------------------------------------------
D
H
V
D
L
R
E
H
V
I
D
V
P
P
Q
E
V
I
C
K
D
N
V
V
V
T
V
D
A
V
V
Y
Y
Q
V
I
D
P
V
K
A
V
Y
----
N
V
S
-----
D
F
L
M
A
I
V
K
L
A
Q
T
N
L
R
A
I
I
G
E
M
E
L
D
E
T
L
S
G
R
D
I
I
N
A
R
L
R
E
E
L
D
K
I
T
D
R
W
G
V
K
I
T
R
V
E
I
Q
R
I
D
P
P
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
51.19
34%
-229
- C3 -
4O83
3
PUR7_PYRHO
B:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
50.95
34%
-221
- C3 -
4O84
3
PUR7_PYRHO
A:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
50.63
34%
-216
- C3 -
4O83
2
PUR7_PYRHO
A:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
50.24
34%
-221
- C3 -
4O81
3
PUR7_PYRHO
A:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
50.16
34%
-208
- C3 -
4O81
4
PUR7_PYRHO
B:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
49.62
34%
-216
- C3 -
4O84
3
PUR7_PYRHO
B:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
49.59
20%
-111
- C- -
4FVJ
-
STOM_MOUSE
A:
[101-198]
-----------------------------------------------------------------------------------
F
D
I
P
P
Q
E
V
L
T
K
D
S
V
T
I
S
V
D
G
V
V
Y
Y
R
V
Q
N
A
T
L
A
V
A
N
I
T
---------
N
A
D
S
A
T
R
L
L
A
Q
T
T
L
R
N
A
L
G
T
K
N
L
S
Q
I
L
S
D
R
E
E
I
A
H
H
M
Q
S
T
L
D
D
A
T
D
D
W
G
I
K
V
E
R
V
E
I
K
D
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
49.43
34%
-224
- C3 -
4O82
3
PUR7_PYRHO
A:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
49.08
34%
-208
- C3 -
4O82
4
PUR7_PYRHO
B:
[138-184]
-------------------------------------------------------------------------------------------------------------------------------------------------
V
L
G
-
I
S
L
D
E
I
-
K
K
I
E
E
I
A
L
K
V
N
E
I
L
K
D
Y
L
A
K
K
G
I
I
L
V
D
F
K
L
E
F
G
K
D
K
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------