@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu34830: (2016-07-29 )
MTSLFSESETEIVSTTYMFLTQDEMKGKAGTLNQPINDFLSLTKKFESSLKEEIKGQKGLIVKKIKKELESNSEKRKAALQMIKEEHTAKVDRYKMIIEDLRQQDVTLTYRKKKPVKDV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20----.........30......-..40....------...-.--50.....--...60..---.--...---.-------.70......---..------------------80.....----...90.------..--..-...100..---.....110.......----------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTSLFSESE
T
E
I
V
S
T
T
Y
M
F
L
-----
T
Q
D
EMKGKAGTLNQ
P
I
N
-
D
F
L
S
L
T
K
K
------
F
E
S
-
S
--
L
K
E
E
IKG--QKG
L
I
V
K
---
K
--
I
K
K
---
E
-------
L
ESN
S
E
K
R
K
---
A
A
------------------
L
Q
M
I
K
E
E
----
H
T
A
K
V
D
------
R
Y
--
K
M
-
I
I
E
D
L
R
QQ---D
V
T
L
T
Y
RKKKPVKDV----------------------------------------------------------------------------
21
Fugue
62.10
18%
106
- C3 -
4UN1
1
?
B:
[21-179]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
H
Q
F
S
P
E
E
Q
A
V
L
R
I
V
Q
A
N
L
PDSLT
P
Y
A
D
L
A
E
Q
A
G
M
T
E
A
Q
V
L
-
E
L
L
G
R
L
K
A
S
GAIRR
F
G
A
-
S
--
I
K
H
Q
K
T
G
W
T
H
N
A
M
V
A
W
---
K
--
V
T
P
---
D
-------
Q
V
D
D
C
G
R
K
A
---
A
E
HSHIS
H
V
Y
Y
R
P
S
SAPDWP
Y
E
M
Y
T
M
I
----
H
G
R
S
E
A
------
E
C
--
L
G
-
V
V
E
D
V
K
R
T
T
SL
K
E
H
A
I
L
R
S
L
K
E
L
K
K
T
S
M
T
YFT----------------------------------------------------------------------
5
PsiBlast_PDB
59.89
29%
-118
- C2 -
3HJZ
5
TAL_PROM9
A:
[223-275]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
E
V
M
G
A
S
F
R
N
L
-------
D
E
I
K
E
L
A
G
C
-------
D
L
L
T
I
A
P
K
------
F
-------
L
E
E
L
K
R
--
E
K
G
V
L
I
R
---
K
--
L
D
A
---
S
-------
T
K
I
N
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
57.96
14%
-80
- C2 -
4LWS
5
?
A:
[40-121]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
A
M
A
Q
A
A
Q
D
I
E
Q
S
A
N
-
A
I
R
G
M
Q
N
Q
------
L
A
S
-
A
--
K
D
Q
L
R
S
H
--
W
E
G
D
A
S
M
---
A
--
F
E
A
V
F
N
R
-------
F
N
E
D
F
S
R
V
L
---
K
A
------------------
L
D
G
M
H
E
S
----
L
V
Q
T
R
I
------
T
Y
--
E
A
-
R
E
E
A
--------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.73
34%
-50
- C- -
3V4G
-
ARGR_VIBVY
A:
[9-58]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
V
R
A
------
F
K
A
-
L
--
L
K
E
E
R
F
G
--
S
Q
G
E
I
V
E
---
A
--
L
K
Q
---
E
-------
G
F
E
N
I
N
Q
S
K
---
V
S
------------------
R
M
L
T
K
-------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
52.46
9%
-80
- C2 -
4LWS
9
?
B:
[15-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
G
L
S
E
G
E
A
Q
F
S
M
T
A
R
-
A
L
L
D
E
L
T
D
------
L
E
G
-
K
--
L
R
A
K
L
D
R
--
W
D
G
D
A
Q
A
---
A
--
Y
W
N
---
Y
-------
Q
K
E
W
D
A
A
A
K
D
M
Q
N
V
------------------
V
A
Q
L
G
V
A
----
I
R
E
A
H
D
------
N
Y
--
Q
--------------------------------------------------------------------------------------------------------
22
Fugue
51.07
16%
106
- C2 -
4XGC
-
?
C:
[1-676]
MQ
P
F
Y
E
E
Y
R
K
A
W
N
Q
I
N
D
H
I
A
D
L
Q
H
R
S
Y
A
R
T
L
E
Q
L
V
D
F
V
V
G
Q
A
E
RDE
V
L
P
T
A
A
L
LTGINQPDH
L
S
Q
F
T
A
L
T
Q
R
L
H
A
Q
RA
A
M
V
C
V
L
Q
SRDCAT
L
K
A
A
V
E
T
L
V
F
G
L
V
E
D
N
A
E
V
E
QLRRSQCT
M
K
Q
L
K
S
W
Y
T
N
N
FDSEQ
K
R
R
Q
L
V
V
I
L
PDFECFN
A
S
V
L
Q
D
L
I
L
I
L
S
A
H
CGSLP
F
V
L
V
L
GVATAM
T
A
V
H
G
T
L
P
Y
H
V
S
S
K
IR
L
R
V
F
Q
T
QA
A
P
T
G
L
N
E
V
L
D
K
VLLSPKYA
F
H
L
S
G
K
T
F
K
F
L
T
H
I
F
L
Y
YDFS
I
H
G
F
I
Q
G
F
K
Y
C
L
M
E
H
F
F
GGNAFALCTD
Y
S
K
A
L
G
R
I
K
Q
LT
H
E
D
M
E
T
I
R
R
LPS
F
R
P
Y
V
E
Q
IND
C
K
R
I
I
A
V
L
TD
D
D
Y
L
K
K
K
L
P
Q
L
L
R
D
C
L
L
H
F
L
L
F
R
C
S
L
E
F
L
T
E
L
V
G
D
LPRCPLGKL
R
R
E
L
Y
V
N
C
L
N
R
A
I
I
S
T
P
E
Y
K
E
C
L
Q
M
L
S
F
L
-----
S
K
D
E
F
V
A
K
V
N
R
A
L
E
R
T
E
-
Q
F
L
V
E
E
I
A
-------
P
L
-
E
--
L
G
E
A
C
T
A
--
V
L
R
P
K
L
E
---
A
--
I
R
L
---
A
-------
V
D
E
V
G
R
A
L
Q
---
K
T
------------------
L
Q
L
I
E
T
Q
IVQD
H
L
R
A
L
Q
------
D
A
--
P
P
-
I
H
E
L
F
V
F
S
---
D
I
A
T
V
R
R
N
I
I
G
A
P
R
A
A
L
H
T
A
L
N
NPHFP
D
L
S
V
V
Y
K
L
H
L
E
C
GRMIN
L
F
D
W
L
Q
A
F
R
S
V
VP
Q
I
Q
A
R
F
T
R
A
V
A
E
L
Q
F
L
GYIKMSKRKTD
H
A
T
R
LTW
25
Fugue
50.21
16%
26
- C1 -
1AA7
-
M1_I34A1
A:
[1-158]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
L
T
E
V
E
T
Y
V
L
S
I
I
P
S
G
P
-----
L
K
A
E
I
A
Q
R
L
E
D
V
F
A
G
K
N
T
D
L
E
V
L
M
E
W
------
L
K
T
-
R
PI
L
S
P
L
T
K
G
--
I
L
G
F
V
F
T
---
L
--
T
V
P
---
S
-------
E
R
G
L
Q
R
R
R
F
---
V
Q
------------------
N
A
L
N
G
N
G
----
D
P
N
N
M
D
------
K
A
--
V
K
-
L
Y
R
K
L
K
R
----
E
I
T
F
H
G
A
K
E
I
S
L
S
Y
S
A
G
A
L
A
S
C
M
G
L
I
Y
N
RM
G
A
V
T
T
E
V
A
F
G
L
V
C
A
T
C
E
Q
I
A
D
S
Q--------------------------------------
15
HHSearch
47.15
17%
41
- C2 -
4J42
2
?
A:
[10-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
P
E
E
L
E
R
I
A
G
N
F
K
N
A
A
G
-
E
A
Q
S
Q
I
N
R
------
L
E
G
-
D
--
I
N
S
L
E
G
Q
--
W
A
G
A
T
Q
A
---
K
--
F
R
G
---
E
-------
F
I
Q
S
K
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.92
4%
-124
- C2 -
4LL7
1
SHE3_YEAST
A:
[2-46]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
V
I
E
---
S
--
L
H
D
---
Q
-------
I
D
M
L
T
K
T
N
L
---
Q
L
------------------
T
-
T
Q
S
Q
N
----
L
L
S
K
L
E
------
L
A
--
Q
S
-
K
E
S
K
L
L
E
N
----------------------------------------------------------------------------------------------
9
HHSearch
45.72
31%
-57
- C2 -
4HR6
-
?
A:
[8-23]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
S
G
------
T
Y
--
K
T
-
F
I
G
R
V
R
E
E
----------------------------------------------------------------------------------------------
6
PsiBlast_PDB
42.49
20%
107
- C2 -
1JK0
-
RIR2_YEAST
A:
[46-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
K
E
------
L
E
T
----
L
R
E
E
N
R
V
--
K
S
D
M
L
K
E
---
K
--
L
S
K
---
D
A
E
N
H
K
A
Y
L
K
S
H
Q
V
H
R
H
---
K
L
------------------
K
E
M
E
K
E
E
----
P
L
L
N
E
D
------
K
E
--
R
T
-
V
L
F
P
I
K
Y
H
---
E
I
W
Q
A
Y
K
R
A
E
---------------------------------------------------------------------------------
4
PsiBlast_PDB
40.88
45%
1
- C2 -
3SWV
-
BIG2_HUMAN
A:
[801-828]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
G
I
N
-
D
S
K
D
L
P
E
E
------
Y
L
S
-
S
--
I
Y
E
E
I
E
G
--
K
K
--
I
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.63
16%
124
* C3 *
2MQ8
-
?
A:
[1-112]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
T
V
E
V
E
V
K
I
T
A
D
------------
D
E
N
K
A
E
E
I
V
K
R
V
I
D
E
-
V
E
R
E
V
Q
K
Q
------
Y
P
N
A
T
--
I
T
R
T
L
T
R
--
D
D
G
T
V
E
L
---
R
--
I
K
V
---
K
-------
A
D
T
-
E
E
K
A
K
---
S
I
------------------
I
K
L
I
E
E
R
----
I
E
E
E
L
R
------
K
R
DP
N
A
-
T
I
T
R
T
V
R
T
---
E
V
G
S
S
W
S
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------
14
HHSearch
40.54
7%
-48
- C2 -
3H6P
1
?
A:
[31-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
A
A
K
A
G
-
L
M
R
H
T
I
G
Q
------
A
E
Q
-
Q
--
A
M
S
A
Q
A
F
--
H
Q
G
E
S
A
A
A
F
Q
G
--
A
H
A
---
R
-------
F
V
A
A
A
A
K
V
N
---
T
L
------------------
L
D
I
A
Q
A
N
----
L
------------------------------------------------------------------------------------------------------------------------
13
HHSearch
39.59
21%
-
- C- -
1USE
-
VASP_HUMAN
A:
[349-376]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
------
L
L
E
-
E
--
V
K
K
E
L
Q
K
--
V
K
E
E
I
I
E
---
A
--
F
V
Q
---
E
-------
L
R
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
39.48
20%
-25
- C2 -
2E74
3
PETN_MASLA
H:
[1-29]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
I
D
V
L
-
G
W
V
A
L
L
V
V
------
F
T
W
-
S
--
I
A
M
V
V
W
G
--
R
N
G
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
38.84
13%
93
- C2 -
2W0C
-
P6_BPPM2
T:
[1-127]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
N
F
L
T
K
N
F
V
W
I
L
A
A
G
V
G
V
W
-----
F
Y
Q
K
A
D
N
A
A
K
T
A
T
K
P
I
A
-
D
F
L
A
E
L
Q
F
------
L
V
N
-
G
--
S
N
Y
V
K
F
P
--
N
A
G
F
V
L
T
---
R
DA
L
Q
D
---
D
-------
F
I
A
Y
D
D
R
I
K
---
A
W
------------------
L
G
T
H
D
R
H
----
K
D
F
L
A
E
ILDHER
R
V
--
K
P
-
V
Y
R
K
L
I
G
N
---
I
I
D
A
S
T
I
R
A
A
S
G
V
E
L
----------------------------------------------------------------------------
2
PsiBlast_PDB
38.64
39%
61
- C2 -
2W0N
-
A:
[9-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-------
I
S
T
L
F
E
Q
R
Q
---
A
M
------------------
L
Q
S
I
K
E
G
----
V
V
A
V
D
D
------
R
G
--
E
V
T
L
I
N
D
A
A
Q
E
-----
L
L
N
Y
R
K
S
Q
---------------------------------------------------------------------------------
7
PsiBlast_PDB
38.04
20%
139
- C2 -
1SMQ
-
RIR2_YEAST
A:
[26-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
K
E
------
L
E
T
----
L
R
E
E
N
R
V
--
K
S
D
M
L
K
E
---
K
--
L
S
K
---
D
A
E
N
H
K
A
Y
L
K
S
H
Q
V
H
R
H
---
K
L
------------------
K
E
M
E
K
E
E
----
P
L
L
N
E
D
------
K
E
--
R
T
-
V
L
F
P
I
K
Y
H
---
E
I
W
Q
A
Y
K
R
A
E
---------------------------------------------------------------------------------
3
PsiBlast_PDB
37.52
45%
-6
- C2 -
3L8N
-
A:
[167-194]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
G
I
N
-
D
S
K
D
L
P
E
E
------
Y
L
S
-
S
--
I
Y
E
E
I
E
G
--
K
K
--
I
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------