@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35150: (2016-07-29 )
MDALIEEVDGISNRTEFNGKKLLDGTETDGFTFQIGANAGQQLTVNIDSMSSTALGVNALNVTDFANTPFDTQLESIDTAINNVSNQRAKLGAVQNRLEHTINNLGASSENLTAAESRIRDVDMAKEMSEFTKNNIPSQASQAMLAQANQQPQNVLQLLR
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........-40......-..50-.........60....-....70.------.--......80........90........100.....-..110.......120.......130.......140.......150.......160---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
D
A
L
I
E
E
V
DGISNRTEFNGKKLLDGTETD
G
F
T
F
Q
IGANA-G
Q
Q
L
T
V
N
I-DSM--SSTAL
G
V
N
A
L
N
VTDF-ANTPF
D
T
------
Q
--
L
E
S
I
D
T
A
I
N
N
VSN
Q
R
A
K
L
G
A
V
Q
N
R
L
E
H
T
I
N
NLGA-SSEN
L
T
A
A
E
S
R
I
R
D
V
D
M
A
K
E
M
S
E
F
T
KNNIP
S
Q
A
S
Q
A
M
L
A
QANQQ
P
Q
N
V
L
Q
LLR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
64.88
38%
-70
- C2 -
3K8V
-
?
A:
[282-363]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
S
L
T
V
S
S
F
-
T
N
A
Q
--
Q
------
T
--
I
T
Q
I
D
N
A
L
K
D
I
N
T
A
R
A
D
L
G
A
V
Q
N
R
F
T
S
T
V
A
N
L
Q
S
-
M
T
E
N
L
S
S
A
R
G
R
V
T
D
A
D
F
A
S
E
T
A
N
L
S
R
A
Q
I
L
Q
Q
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
59.83
34%
63
- C2 -
1UCU
-
FLIC_SALTY
A:
[1-494]
AQ
V
I
N
T
N
S
L
S
L
L
T
Q
N
N
L
N
K
S
Q
S
A
L
G
T
A
I
E
R
L
S
SGLRINSAKDD
A
A
G
Q
A
I
A
N
R
F
T
A
N
I
K
G
L
T
Q
A
S
R
N
A
N
D
G
I
S
I
A
Q
T
T
E
G
A
L
N
E
I
N
N
N
L
Q
R
V
R
E
L
A
V
Q
S
A
NSTNS
Q
S
D
L
D
S
I
Q
A
E
I
T
Q
R
L
N
E
I
D
R
V
S
G
QTQFNGVKVLA
Q
D
N
T
L
T
I
Q
VGANDGE
T
I
D
I
D
L
K
QINSQTLGLDTLNV
Q
Q
K
Y
K
V
S
D
T
A
A
T
V
T
G
Y
A
D
T
TIALDNST
F
K
A
S
A
TGLGGT
D
Q
K
I
D
G
D
L
K
F
D
DTTG
K
Y
Y
A
K
V
T
V
T
GGTGKD
G
Y
Y
E
V
S
V
DKTN
G
E
V
T
LAGGATSPLTGGLPATATEDVK
N
V
Q
V
ANADL
T
E
A
K
A
A
L
T
A
A
GVT
G
T
A
S
V
V
K
M
S
Y
T
D
NNG
K
T
I
D
G
G
L
A
V
K
V
GDD
Y
Y
S
A
T
Q
N
K
D
G
S
I
S
I
N
T
T
K
Y
T
A
D
D
G
T
S
K
T
A
--
L
N
K
L
G
G
A
D
-
G
K
T
E
V
V
S
I
-
G
G
K
--
T
Y
A
A
S
K
A
E
G
H
N
F
K
A
Q
-
P
D
L
A
E
A
A
A
T
T
T
E
N
P
--
L
Q
K
I
D
A
A
L
A
Q
V
D
T
L
R
S
D
L
G
A
V
Q
N
R
F
N
S
A
I
T
N
L
G
N
-
T
V
N
N
L
T
S
V
R
S
R
I
E
D
S
D
Y
A
T
E
V
S
N
M
S
R
A
Q
I
L
Q
Q
A
G
T
S
V
L
A
Q
A
N
Q
V
P
Q
N
V
L
S
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
59.18
49%
75
- C2 -
3A5X
-
FLIC_SALTY
A:
[400-494]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
T
T
T
E
N
------
P
--
L
Q
K
I
D
A
A
L
A
Q
V
D
T
L
R
S
D
L
A
A
V
Q
N
R
F
N
S
A
I
T
N
L
G
N
-
T
V
N
N
L
T
S
A
R
S
R
I
E
D
S
D
Y
A
T
E
V
S
N
M
S
R
A
Q
I
L
Q
Q
A
G
T
S
V
L
A
Q
A
N
Q
V
P
Q
N
V
L
S
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
58.29
49%
68
- C2 -
1UCU
-
FLIC_SALTY
A:
[400-494]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
T
T
T
E
N
------
P
--
L
Q
K
I
D
A
A
L
A
Q
V
D
T
L
R
S
D
L
G
A
V
Q
N
R
F
N
S
A
I
T
N
L
G
N
-
T
V
N
N
L
T
S
V
R
S
R
I
E
D
S
D
Y
A
T
E
V
S
N
M
S
R
A
Q
I
L
Q
Q
A
G
T
S
V
L
A
Q
A
N
Q
V
P
Q
N
V
L
S
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
57.02
49%
68
- C2 -
1UCU
-
FLIC_SALTY
A:
[403-494]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
E
N
------
P
--
L
Q
K
I
D
A
A
L
A
Q
V
D
T
L
R
S
D
L
G
A
V
Q
N
R
F
N
S
A
I
T
N
L
G
N
-
T
V
N
N
L
T
S
V
R
S
R
I
E
D
S
D
Y
A
T
E
V
S
N
M
S
R
A
Q
I
L
Q
Q
A
G
T
S
V
L
A
Q
A
N
Q
V
P
Q
N
V
L
S
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
55.21
44%
-126
- C2 -
4NX9
-
?
A:
[288-334]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
I
S
T
A
K
G
A
Q
S
------
A
--
V
L
V
I
D
E
A
I
K
Q
I
D
A
Q
R
A
D
L
G
A
V
Q
N
R
F
D
N
T
I
N
N
L
K
N
-
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
54.95
38%
-43
- C2 -
3K8W
-
?
A:
[289-339]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
T
N
A
Q
Q
------
T
--
I
T
Q
I
D
N
A
L
K
D
I
N
T
A
R
A
D
L
G
A
V
Q
N
R
F
T
S
T
V
A
N
L
Q
S
-
M
T
E
N
L
S
S
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.76
42%
33
- C2 -
3V47
-
FLIC_SALDU
C:
[336-419]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
A
T
G
D
K
I
T
L
A
G
-
K
T
M
F
I
D
K
T
A
S
G
V
S
T
L
I
N
E
D
A
-
A
A
A
K
K
S
T
------
A
N
P
L
A
S
I
D
S
A
L
S
K
V
D
A
V
R
S
S
L
G
A
I
Q
N
R
F
D
S
A
I
T
N
L
G
N
-
T
V
T
N
L
N
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
53.93
13%
-158
- C2 -
3K1H
-
?
A:
[72-147]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
I
I
K
Q
E
L
R
E
I
V
E
N
C
Q
F
L
A
S
P
L
F
D
T
Q
----
L
N
I
A
I
N
D
E
I
----
F
S
M
I
V
-
V
--------------------
N
P
---
L
D
------
L
--
L
E
N
V
G
E
F
Q
A
Y
L
E
E
K
L
N
E
I
K
E
L
L
G
Y
L
S
E
S
L
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
53.22
13%
-150
- C2 -
3K1I
-
?
C:
[72-146]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
I
I
K
Q
E
L
R
E
I
V
E
N
C
Q
F
L
A
S
P
L
F
D
T
Q
----
L
N
I
A
I
N
D
E
I
----
F
S
M
I
V
-
V
--------------------
N
P
---
L
D
------
L
--
L
E
N
V
G
E
F
Q
A
Y
L
E
E
K
L
N
E
I
K
E
L
L
G
Y
L
S
E
S
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
51.76
27%
-55
- C2 -
2Q9R
6
?
A:
[65-143]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
K
F
N
I
-
D
----------
V
H
L
Q
R
L
E
D
N
-
T
P
E
P
A
D
F
------
E
--
A
Y
G
V
Y
P
A
M
D
A
V
V
A
I
S
T
L
L
G
A
I
Q
G
K
I
E
E
D
I
V
N
I
S
K
L
S
S
S
T
V
A
N
Y
I
E
A
I
S
D
V
D
L
V
D
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.23
68%
-57
- C2 -
4IWB
-
FLAA_AQUAE
A:
[3-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
V
D
F
A
K
E
M
T
E
F
T
K
Y
Q
I
R
M
Q
S
G
V
A
M
L
A
Q
A
N
A
L
P
Q
L
V
L
Q
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
49.82
38%
-
- C2 -
2NPS
-
VTI1A_RAT
C:
[150-188]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
L
S
H
D
R
E
R
I
Q
R
A
R
E
R
L
R
E
T
D
A
N
L
G
K
-
S
S
R
I
L
T
G
M
L
R
R
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
49.61
19%
36
- C2 -
1IO1
-
FLIC_SALTY
A:
[56-450]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI
K
G
L
T
Q
A
S
R
N
A
N
D
G
I
S
I
A
Q
T
T
E
G
A
L
N
E
I
N
N
N
L
Q
R
V
R
E
L
A
V
Q
S
A
NSTNS
Q
S
D
L
D
S
I
Q
A
E
I
T
Q
R
L
N
E
I
D
R
V
S
G
Q
T
Q
F
N
G
V
K
V
L
A
Q
D
--
N
T
L
T
I
Q
V
G
A
N
D
-
G
E
T
I
D
I
D
L
-
K
Q
I
--
N
S
Q
T
L
G
L
D
T
L
N
V
Q
Q
--
K
Y
K
V
S
D
T
------
A
--
A
T
V
T
G
Y
A
D
T
T
I
A
L
D
N
S
T
F
K
A
S
A
T
G
L
G
G
T
D
Q
K
I
D
G
-
D
L
K
F
D
D
T
T
G
K
Y
Y
A
K
V
T
V
T
G
G
T
G
K
D
G
Y
Y
E
V
S
V
D
K
T
N
G
E
V
T
L
A
G
G
A
T
S
P
L
T
G
G
L
P
ATATEDVK
N
V
Q
V
A
NADL
T
E
A
K
A
A
L
T
A
A
GVT
G
T
A
S
V
V
K
M
S
Y
T
D
NNG
K
T
I
D
G
G
L
A
V
K
V
GDDY
Y
S
A
T
Q
N
KDG
S
I
S
I
N
T
T
K
Y
T
A
DD
G
T
S
K
T
A
L
N
K
L
G
G
ADGKTE
V
V
S
I
GGKTYAASKAEGHNFKAQ
P
D
L
A
E
A
AA
T
T
T
E
N
P
L
Q
K
I
D
A
A
L
A
Q
V
D
T
L
R
S
D
L
A
A
V
Q
N
R
F
N
S
A
I
T
N
L
G
N
T
V
N
N
L
T
S
A
R
44
Fugue
48.18
13%
73
- C2 -
4ETR
-
?
A:
[5-150]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
L
D
D
T
L
D
V
L
N
D
L
L
Q
T
S
K
D
G
E
A
G
F
H
A
C
A
E
------------------------------------------------
D
L
------
R
--
D
P
Q
L
K
A
A
M
L
E
Q
S
R
D
C
A
A
A
---
A
D
E
L
E
R
I
V
L
E
L
G
G
-
K
P
E
E
A
V
L
N
E
C
E
R
G
E
D
V
A
K
H
R
Y
Q
A
A
L
E
K
S
L
P
A
E
I
H
Q
V
I
E
R
Q
Y
Q
G
V
L
R
H
H
D
R
V
R
A
L
R
D
A
R
A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
46.71
43%
-7
- C- -
4CFI
-
?
A:
[119-170]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
E
V
N
R
I
A
S
Q
T
N
Y
N
G
K
N
I
L
D
G
S
A
G
T
-
L
S
F
Q
V
G
A
N
V
-
G
Q
T
V
S
V
D
L
T
Q
S
M
--
S
A
A
K
I
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
46.58
62%
-68
- C2 -
1ORY
-
B:
[16-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
D
F
A
K
E
M
T
E
F
T
K
Y
Q
I
R
M
Q
S
G
V
A
M
L
A
Q
A
N
A
L
P
Q
L
V
L
Q
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
46.26
60%
-68
- C2 -
1ORY
-
B:
[16-55]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
D
F
A
K
E
M
T
E
F
T
K
Y
Q
I
R
M
Q
S
G
V
A
M
L
A
Q
A
N
A
L
P
Q
L
V
L
Q
L
L
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
45.06
44%
72
- C2 -
3V47
-
FLIC_SALDU
C:
[372-419]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
T
A
N
------
P
--
L
A
S
I
D
S
A
L
S
K
V
D
A
V
R
S
S
L
G
A
I
Q
N
R
F
D
S
A
I
T
N
L
G
N
-
T
V
T
N
L
N
S
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
44.99
58%
-
- C2 -
4NX9
-
?
A:
[303-334]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
E
A
I
K
Q
I
D
A
Q
R
A
D
L
G
A
V
Q
N
R
F
D
N
T
I
N
N
L
K
N
-
I
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