@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35190: (2016-07-29 )
MYSVLFRQAEESSQLAGAKGMNLIKLTKHGLPVPDGFIIQTNALARFMEDNQLQETSENVEGGIISGTFSDELKDELTSSFYKLRESYRSVAVRSSSASEDLEGASFAGQYETYLNIKTEEEFLAKVKECWASFFSGRVSSYKKKMNNQIAEPLMGIVVQGLIDSEMSGVIFSRNPVTHDDRELLISASYGLGEAVVSGNVTPDTFIVNKSSFEIQKEIGAKEIYMESAAEGIAEKETSEDMRSRFCLTDEQVIELAEITKKTEDLYGYPVDIEFGIADHQIYLLQARPITTIDQDKKAAEEKRSFMITDTDMNDFWLNMESNIEGPVSPLFSSFIVPALEYGLKKSMQKFPIGVVVDEVKLYRGHIYSKNQGGQQPPSEDCGKELFPILSEHMYDIINHTYLPFYRTLDQLAQTEHTAESALEAFQKLKAFYLTAYEEHFNIVFPQILLTNKLQAMYQDIQGESENAHFYEMLTGKMNKSLETDRCLWLFSVEVQENPNLLAIFENNKPEQLQEKLEQTDEGRHFLKNVHEFLQEYGWRSVKSHDLIEQIWVENPYFALANIQNYVRNGYHFDNEFQKTKEKREKLYNEFLESIEDPGLRTEFDRYYQWTLNSANIKDDHHFYIDAMLDAKARIFLLKIGELLAENGVIQDREDLWFLYDDEVEQALLHPVSLQEKAEKRRQIFHEYELAQAPAYLGTPTKEQLKAAEEIVGAVIEDEKNTENHIFGIAASSGIATGPVKIIRDANEFSQFAPGDVLVCKMTTPLWTSLFQDAKAIITDTGGILSHAAIIAREYGIPAVLGTRTATERLRDGDIITVDGSSGKITVVSRS
Atome Classification :
(20 SA)
-........-----.-10........20.......-.30........40........50---------.-------------------..-.---------------------------------....60.---------------..-------------------------...--------------------------------..70........------80---------------------...----------------------.-------------------------.---....90.------...-------------------------------------------------------------------------....100..--.....110-....-----..-------.-------120-----.........130.......140.......150.......160...-----.-----.-----..170-.........180.......190.......200.......210..-.....220.......230.......240........---250.......260.......270.......280.......290-.......300.......310.......320--.......330.......340.......350.......360.......370.......380-.......390.......400.......410.......420.......--430----........440.......450........460..--.....470........480.......490.......500......-----.510.......520.....-----..-530.....---------..540.......550-.......560--........570.......580.......590.......600.......610.......620.......630.......640.......650.......--660.......670.......680.......690.......700.......710.......720.......730.......740-.-......------------------750........760---.-.......770.--..------..--..780.......790.....-..800.------------.------------.....----------810.......820.......830--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-M
Y
S
V
L
F
RQ-----A-EESSQLAGAKG
M
N
L
I
K
LTK-HGLPVPD
G
F
I
I
Q
T
N
A
L
A
R
F
M
EDN---------
Q
-------------------
L
Q
-
E
---------------------------------
T
SENVEG---------------
G
I
-------------------------
I
SG--------------------------------T
F
S
D
E
L
K
D
E
L
T
S
------
S
----------------------
F
Y
K
----------------------
L
-------------------------
R
---
E
S
Y
R
S
V
A------VRS-------------------------------------------------------------------------SSASEDLEG--ASFAG
Q
Y
E
-
T
Y
L
N
-----
I
K-------
T
-------
E
-------
E
E
F
L
A
K
V
K
E
C
W
A
S
F
F
S
G
R
V
S
S
Y
K
K
K
M
N
N
Q
I
A
E
P
L
M
G
I
V
V
Q
G
L
IDS-----E-----M-----S
G
V
---
I
FSRNPVTHDD
R
E
L
L
I
S
ASYGLGE
A
V
VSGNVTP
D
T
F
I
V
NKSSF
E
-
I
Q
K
EIG
A
K
E
I
Y
M
E
S
A
AEGIAEK
E
T
S
E
-
D
M
R
S
RFCL
T
---
D
E
Q
V
I
E
L
A
E
I
T
K
KTEDLYG
Y
P
V
D
I
E
F
GIAD
H
Q
I
Y
L
L
QARPITT-
I
D
Q
D
K
K
A
A
E
E
KR
S
F
M
I
TDTDMN
D
F
W
L
NMES--NIEG
P
V
S
P
L
F
S
S
F
I
V
P
A
L
E
Y
G
L
K
K
S
M
Q
KFP
I
G
V
V
V
D
E
V
K
L
YR
G
H
I
YSKNQGGQQP
P
S
E
D
C
-
G
K
E
L
F
P
I
L
S
E
H
M
Y
D
I
I
NHT
Y
L
P
F
Y
R
T
L
D
Q
L
A
Q
T
E
H
T
A
E
S
A
L
E
A
F
Q
K
L
--
K
A
-----
F
Y
L
T
A
Y
E
E
H
F
N
I
V
F
P
Q
I
L
L
-
T
N
K
L
Q
A
M
Y
Q
D
IQGE--SEN
A
H
F
Y
-
E
M
L
T
G
K
MNKSLETD
R
C
L
W
L
F
S
V
E
VQENP
N
L
L
A
I
FENN-----
K
P
E
Q
L
Q
E
K
L
E
QTDE
G
R
H
F
L
-----
K
N
-
V
H
E
F
L
Q
E
Y---------GWRSV
K
S
H
D
L
I
E
Q
I
W-VENP
Y
F
A
L
A
---
N
I
Q
N
Y
V
RNGYHF
D
N
E
F
Q
K
T
K
E
K
R
E
K
L
Y
N
E
F
L
E
S
IEDPGLR
T
E
F
D
R
Y
Y
Q
W
T
LNSANIKDD
H
H
F
Y
I
D
A
MLDAK
A
R
I
F
L
L
K
I
G
E
L
L
AENGVIQDRE
D
L
W
F
L
--YD
D
E
V
E
Q
A
LLHPV
S
L
Q
E
K
A
E
K
R
R
Q
I
F
H
E
Y
E
L
AQAPAYLGTP
T
K
E
Q
L
K
A
A
E
E
I
V
G
A
V
IEDEKNTEN
H
I
F
G
I
AASSGIATG
P
V
K
I
-
I
-R
D
A
N
E
F
------------------SQ-FAPG
D
V
L
V
C
K----M-T
T
P
L
W
T
S
L
F
Q
D
--
A
K
------
A
I
--
I
TDT
G
G
I
L
S
H
A
A
I
I
A
R
EYGI-PAVLGT------------
R
------------
T
A
T
E
R----------LRDG
D
I
I
T
VDGSS
G
K
I
T
V
V
SRS---------
3
PsiBlast_PDB
67.14
33%
21
- C2 -
5HV1
2
?
A:
[31-352]
------------------
S
E
A
L
V
G
G
K
G
M
N
L
G
A
C
S
N
I
E
G
V
H
V
P
A
G
F
C
L
T
T
E
A
Y
K
R
T
L
A
E
N
---------
N
E
F
T
Q
L
L
Q
R
L
S
S
LKTSD
M
D
A
I
R
-
E
---------------------------------
I
S
E
T
I
R
T
---------------
L
I
-------------------------
Q
H
T
--------------------------------
Q
I
P
S
E
I
A
S
Y
M
D
A
------
T
----------------------
L
L
D
----------------------
V
-------------------------
G
---
G
Y
E
M
P
F
A
------
V
R
S
-------------------------------------------------------------------------
S
A
T
A
E
D
L
P
H
--
A
S
F
A
G
Q
H
D
-
T
Y
L
N
-----
I
I
-------
G
-------
K
-------
D
A
L
L
Q
H
I
S
M
C
W
A
S
L
F
T
E
R
A
I
I
Y
R
I
Q
N
Q
F
D
H
R
K
V
Q
L
A
V
V
I
Q
Q
M
I
S
P
-----
E
-----
A
-----
S
G
I
---
L
F
T
A
D
P
I
T
S
N
R
K
S
L
S
I
D
A
S
F
G
L
G
E
A
L
V
S
G
L
V
S
A
D
S
Y
T
V
R
E
N
T
I
--
T
N
K
I
I
A
T
K
K
L
A
I
Y
S
L
K
E
G
G
T
E
T
R
I
L
E
K
S
Q
Q
T
K
Q
T
L
T
---
D
Q
Q
I
I
Q
L
A
K
L
G
R
K
I
E
A
Y
F
G
K
P
Q
D
I
E
W
C
L
A
E
G
A
F
Y
I
V
Q
S
R
P
I
T
T
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
66.56
33%
16
- C2 -
5HV3
2
?
A:
[27-356]
------------------
S
E
A
L
V
G
G
K
G
M
N
L
G
A
C
S
N
I
E
G
V
H
V
P
A
G
F
C
L
T
T
E
A
Y
K
R
T
L
A
E
N
---------
N
E
F
T
Q
L
L
Q
R
L
S
S
LKTSD
M
D
A
I
R
-
E
---------------------------------
I
S
E
T
I
R
T
---------------
L
I
-------------------------
Q
H
T
--------------------------------
Q
I
P
S
E
I
A
S
Y
M
D
A
------
T
----------------------
L
L
D
----------------------
V
-------------------------
G
---
G
Y
E
M
P
F
A
------
V
R
S
-------------------------------------------------------------------------
S
A
T
A
E
D
L
P
H
--
A
S
F
A
G
Q
H
D
-
T
Y
L
N
-----
I
I
-------
G
-------
K
-------
D
A
L
L
Q
H
I
S
M
C
W
A
S
L
F
T
E
R
A
I
I
Y
R
I
Q
N
Q
F
D
H
R
K
V
Q
L
A
V
V
I
Q
Q
M
I
S
P
-----
E
-----
A
-----
S
G
I
---
L
F
T
A
D
P
I
T
S
N
R
K
S
L
S
I
D
A
S
F
G
L
G
E
A
L
V
S
G
L
V
S
A
D
S
Y
T
V
R
E
N
T
I
--
T
N
K
I
I
A
T
K
K
L
A
I
Y
S
L
K
E
G
G
T
E
T
R
I
L
E
K
S
Q
Q
T
K
Q
T
L
T
---
D
Q
Q
I
I
Q
L
A
K
L
G
R
K
I
E
A
Y
F
G
K
P
Q
D
I
E
W
C
L
A
E
G
A
F
Y
I
V
Q
S
R
P
I
T
T
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
65.05
33%
14
- C2 -
5HV2
-
?
A:
[15-344]
------------------
S
E
A
L
V
G
G
K
G
M
N
L
G
A
C
S
N
I
E
G
V
H
V
P
A
G
F
C
L
T
T
E
A
Y
K
R
T
L
A
E
N
---------
N
E
F
T
Q
L
L
Q
R
L
SSLKTSDMD
A
I
R
-
E
---------------------------------
I
S
E
T
I
R
T
---------------
L
I
-------------------------
Q
H
T
--------------------------------
Q
I
P
S
E
I
A
S
Y
M
D
A
------
T
----------------------
L
L
D
----------------------
V
-------------------------
G
---
G
Y
E
M
P
F
A
------
V
R
S
-------------------------------------------------------------------------
S
A
T
A
E
---------
A
G
Q
H
D
-
T
Y
L
N
-----
I
I
-------
G
-------
K
-------
D
A
L
L
Q
H
I
S
M
C
W
A
S
L
F
T
E
R
A
I
I
Y
R
I
Q
N
Q
F
D
H
R
K
V
Q
L
A
V
V
I
Q
Q
M
I
S
P
-----
E
-----
A
-----
S
G
I
---
L
F
T
A
D
P
I
T
S
N
R
K
S
L
S
I
D
A
S
F
G
L
G
E
A
L
V
S
G
L
V
S
A
D
S
Y
T
V
R
E
N
T
I
--
T
N
K
I
I
A
T
K
K
L
A
I
Y
S
L
K
E
G
G
T
E
T
R
I
L
E
K
S
Q
Q
T
K
Q
T
L
T
---
D
Q
Q
I
I
Q
L
A
K
L
G
R
K
I
E
A
Y
F
G
K
P
Q
D
I
E
W
C
L
A
E
G
A
F
Y
I
V
Q
S
R
P
I
T
T
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.98
34%
34
- C2 -
5HV6
-
?
A:
[15-314]
------------------
S
E
A
L
V
G
G
K
G
M
N
L
G
A
C
S
N
I
E
G
V
H
V
P
A
G
F
C
L
T
T
E
A
Y
K
R
T
L
A
E
N
---------
N
E
F
T
Q
L
L
Q
R
L
S
S
LKTSDMDA
I
R
-
E
---------------------------------
I
S
E
T
I
R
T
---------------
L
I
-------------------------
Q
H
T
--------------------------------
Q
I
P
S
E
I
A
S
Y
M
D
A
------
T
----------------------
L
L
D
----------------------
V
-------------------------
G
---
G
Y
E
M
P
F
A
------
V
R
S
-------------------------------------------------------------------------
S
A
T
A
E
-------
S
F
A
G
Q
H
D
-
T
Y
L
N
-----
I
I
-------
G
-------
K
-------
D
A
L
L
Q
H
I
S
M
C
W
A
S
L
F
T
E
R
A
I
I
Y
R
I
Q
N
Q
F
D
H
R
K
V
Q
L
A
V
V
I
Q
Q
M
I
S
P
-----
E
-----
A
-----
S
G
I
---
L
F
T
A
D
P
I
T
S
N
R
K
S
L
S
I
D
A
S
F
G
L
G
E
A
L
V
S
G
L
V
S
A
D
S
Y
T
V
R
E
N
T
I
T
--
N
K
I
I
A
T
K
K
L
A
I
Y
S
L
K
E
G
G
T
E
T
R
I
L
E
K
S
Q
Q
T
K
Q
T
L
T
---
D
Q
Q
I
I
Q
L
A
K
L
G
R
K
I
E
A
Y
F
G
K
P
Q
D
I
E
W
C
L
A
E
G
A
F
Y
I
V
Q
S
R
P
I
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
61.65
14%
48
- C2 -
1JDE
2
PPDK_CLOSY
A:
[1-873]
A
K
W
V
Y
K
F
E
E
-----
G
N
A
S
M
R
N
L
L
G
G
A
G
C
N
L
A
E
M
T
I
-
L
G
M
P
I
P
Q
G
F
T
V
T
T
E
A
C
T
E
Y
Y
N
S
G
K
Q
I
T
Q
E
I
Q
D
Q
-------------------
I
F
-
E
---------------------------------
A
I
T
W
L
E
E
L
N
G
K
K
F
GDTED
P
L
L
V
S
V
-------------------------
R
S
G
A
RASMPG
M
M
D
T
I
L
NLGLN
D
V
A
V
E
G
F
A
K
K
T
GNP
R
F
A
Y
D
S
Y
R
R
F
I
Q
------
M
----------------------
Y
S
D
V
V
MEVPK
S
H
-------------
F
-------------------------
E
---
K
I
I
D
A
M
K
EEKGVH
F
D
T
-------------------------------------------------------------------------
D
L
T
A
D
D
L
K
E
--
L
A
E
K
F
K
A
V
-
Y
K
E
A
-----
M
N
GEEFPQE
P
-------
K
-------
D
Q
L
M
G
A
V
K
A
V
F
R
S
W
D
N
P
R
A
I
V
Y
R
R
M
N
D
I
P
-
G
D
W
G
T
A
V
N
V
Q
T
M
V
F
G
-----
N
-----
K
GET
S
G
T
G
V
---
A
F
T
R
N
P
S
T
G
E
K
G
I
Y
G
E
Y
L
I
N
A
Q
G
E
D
V
V
A
G
V
R
T
P
Q
P
I
T
Q
L
E
N
D
M
P
-----------------------------------------
D
C
Y
K
Q
F
M
D
L
A
M
K
L
E
K
H
F
R
D
M
Q
D
M
E
F
T
I
E
E
G
K
L
Y
F
L
Q
T
R
N
G
K
R
-
T
--------
A
P
A
A
L
Q
I
A
C
D
L
V
D
E
G
M
I
T
E
E
E
--
A
V
V
R
I
E
A
K
S
L
D
Q
L
L
H
P
T
F
N
P
A
A
L
K
A
G
E
V
I
G
S
A
L
P
A
S
P
-
G
A
A
A
G
K
V
Y
F
T
A
D
E
A
K
A
A
H
E
K
---
G
E
R
V
I
L
V
R
L
E
T
S
P
E
D
I
E
G
M
H
A
A
E
G
I
L
T
V
R
G
G
M
T
S
H
A
A
V
V
A
R
G
M
G
T
C
C
V
S
G
C
-----
G
E
I
K
I
N
E
E
A
K
T
F
E
L
G
G
H
T
F
-
A
E
G
D
Y
I
S
L
D
G
S
T
G
K
I
E
T
Q
E
A
S
V
S
-
G
S
F
E
R
I
M
V
W
A
D
K
F
R
T
L
K
V
R
T
N
A
D
T
P
E
D
T
L
N
A
V
K
L
G
A
E
GIGLC
R
T
E
H
M
F
F
E
A
D
R
I
M
K
I
R
K
M
I
L
SDS
V
E
A
-
R
E
E
A
L
N
E
L
---------
I
P
F
Q
K
G
D
F
K
A
M
Y
K
A
L
-
E
G
R
P
M
T
V
R
Y
LDP
P
L
H
E
F
V
P
H
T
E
E
E
Q
A
E
L
A
K
N
M
G
L
T
L
A
E
V
K
A
K
V
D
E
L
H
E
F
N
P
M
M
G
H
--------
R
G
C
R
L
A
V
T
Y
----
P
E
I
A
K
M
Q
T
R
A
V
M
E
A
A
I
E
V
K
E
E
T
G
I
D
I
V
P
E
I
M
I
P
L
VG
E
K
K
E
L
K
F
V
K
D
V
V
V
E
V
A
E
Q
V
K
K
E
K
G
S
D
M
Q
Y
H
I
G
T
M
I
E
-----
I
P
R
A
A
L
T
A
D
A
I
A
-------
E
E
A
E
F
F
S
F
G
T
N
D
L
T
Q
M
T
F
G
F
-------
S
R
D
D
A
------------------
G
K
-
F
L
D
S
Y
Y
K
A
K
I
----
Y
-
E
S
D
P
F
A
R
L
D
Q
T
--
G
V
------
G
Q
--
L
V
E
M
A
V
K
K
G
R
Q
T
R
P
G
L
K
C
G
I
C
G
E
H
G
G
D
------------
P
------------
S
S
V
E
F
----------
C
H
K
V
G
L
N
Y
V
S
C
S
P
F
R
V
P
I
A
R
L
A
A
A
Q
A
A
LNNK
27
HHSearch
52.45
25%
23
- C2 -
2X0S
-
?
A:
[4-370]
-
K
W
V
Y
Y
F
G
G
GNADG
N
-
K
N
M
K
E
L
L
G
G
K
G
A
N
L
A
E
M
V
N
-
L
G
I
P
V
P
P
G
F
T
I
T
T
E
A
C
K
T
Y
Q
E
T
E
---------
T
-------------------
I
--------------------------------------------------------------------------------------------------------------------------
P
Q
E
V
A
D
Q
V
R
E
------
N
----------------------
V
S
R
----------------------
V
E
K
E
M
GAK------------------
F
GDP
A
N
P
L
L
F
S
------
V
R
S
G
A
AASM
D
T
V
L
NLGLN
K
V
T
V
D
A
W
V
R
R
APRL
E
R
F
V
Y
D
S
Y
R
R
F
I
T
M
Y
A
D
IVMQVGR
E
D
F
E
E
A
L
S
R
M
K
E
R
R
GTKFDT
D
L
T
A
S
D
L
K
E
--
L
-
C
D
G
Y
L
E
-
L
F
E
L
-----
K
T
-------
G
CSFPQD
P
V
-------
M
Q
L
F
A
A
I
K
A
V
F
R
S
W
G
N
P
R
A
T
I
Y
R
R
M
N
N
I
T
G
-
L
L
G
T
A
V
N
V
Q
A
M
V
F
G
NINDR
S
-----
A
-----
T
G
V
---
A
F
S
R
S
P
S
T
G
E
N
F
F
F
G
E
Y
L
V
N
A
Q
G
E
D
V
V
A
G
I
R
T
P
Q
Q
I
N
H
S
L
S
L
R
W
A
K
A
H
G
V
G
E
E
-----------------
E
-
R
R
K
R
Y
P
S
M
E
EAM
P
E
N
Y
R
L
L
C
D
V
R
K
R
L
E
N
H
Y
R
D
M
Q
D
L
E
F
T
V
Q
D
G
R
L
W
L
L
Q
C
R
N
G
K
R
-
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
46.53
21%
42
- C2 -
1KBL
1
PPDK_CLOSY
A:
[2-342]
-
K
W
V
Y
K
F
E
E
G----
N
-
A
S
M
R
N
L
L
G
G
K
G
C
N
L
A
E
M
T
I
-
L
G
M
P
I
P
Q
G
F
T
V
T
T
E
A
C
T
E
Y
Y
N
S
G
---------
K
Q------------------
I
T
Q
E
---------------------------------
I
Q
D
Q
I
F
E
---------------
A
I
T
W
L
E
E
L
N
GKKFGDT
E
D
P
L
L
V
S
V
R
S
G
A
R
A
--------------------------------
S
M
P
G
M
M
D
T
I
L
N
L
------
G
LN
D
V
A
V
E
G
F
A
K
K
T
GN
P
R
F
A
Y
D
S
Y
R
R
F
I
Q
M
Y
S
D
VVMEVPK
S
H
F
E
K
I
I
D
A
-------------------------
M
---
K
E
E
K
G
V
H
------
F
D
T
-------------------------------------------------------------------------
D
L
T
A
D
D
L
K
E
L
A
E
K
F
K
A
V
Y
K
-
E
A
M
N
GEEFP
Q
E
-------
P
-------
K
-------
D
Q
L
M
G
A
V
K
A
V
F
R
S
W
D
N
P
R
A
I
V
Y
R
R
M
N
D
I
P
G
-
D
W
G
T
A
V
N
V
Q
T
M
V
F
G
-----
N
KGET
S
G
-----
T
G
V
---
A
F
T
R
N
P
S
T
G
E
K
G
I
Y
G
E
Y
L
I
N
A
Q
G
E
D
V
V
A
G
V
R
T
P
Q
P
I
T
Q
L
E
N
--------------------------------------
D
M
---
P
D
C
Y
K
Q
F
M
D
L
A
M
K
L
E
K
H
F
R
D
M
Q
D
M
E
F
T
I
E
E
G
K
L
Y
F
L
Q
T
R
N
G
K
R
-
T
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
44.30
25%
52
- C2 -
1VBG
-
PPDK1_MAIZE
A:
[4-346]
-
K
R
V
F
H
F
G
K
GKSEG
N
-
K
T
M
K
E
L
L
G
G
K
G
A
N
L
A
E
M
A
S
-
I
G
L
S
V
P
P
G
F
T
V
S
T
E
A
C
Q
Q
Y
Q
D
A
G
CALPA----
G
-------------------
L
W
A
E
I
V
D
G
L
Q
W
V
E
E
Y
M
GATLGDPQR
P
L
L
L
S
V
R
S
G
A
AV
S
M
P
G
M
M
D
---------------
T
V
-------------------------
L
N
L
--------------------------------
G
L
N
D
E
V
A
A
G
L
A
A
KSG
E
R
F
A
----------------------
Y
D
S
----------------------
F
R
R
F
L
D
M
F
G
N
VVMDIP
R
S
L
F
E
E
K
L
E
H
M
---
K
E
S
K
G
L
K
------
N
D
T
-------------------------------------------------------------------------
D
L
T
A
S
D
L
K
----
E
L
V
G
Q
Y
K
E
V
Y
L
S
-----
A
K
-------
G
-------
E
PFPSD
P
K
K
Q
L
E
L
A
V
L
A
V
F
N
S
W
E
S
P
R
A
K
K
Y
R
S
I
N
Q
I
T
G
-
L
R
G
T
A
V
N
V
Q
C
M
V
F
G
NMGNT
S
-----
G
-----
T
G
V
---
L
F
T
R
N
P
N
T
G
E
K
K
L
Y
G
E
F
L
V
N
A
Q
G
E
D
V
V
A
G
I
R
T
P
E
D
L
D
A
M
K
--------------------------------------
N
L
M
---
P
Q
A
Y
D
E
L
V
E
N
C
N
I
L
E
S
H
Y
K
E
M
Q
D
I
E
F
T
V
Q
E
N
R
L
W
M
L
Q
C
R
T
G
K
R
-
T
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.09
29%
-63
- C3 -
1VBG
-
PPDK1_MAIZE
A:
[398-510]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
P
A
S
P
G
A
A
V
G
Q
V
V
F
-
T
A
E
D
A
E
A
W
------------------
H
S
-
Q
G
K
A
A
I
L
V
R
A
----
E
-
T
S
P
E
D
V
G
G
M
H
A
--
A
V
------
G
I
--
L
T
E
R
G
G
M
T
S
H
A
A
V
V
A
R
G
W
G
K
-
C
C
V
S
G
C
------------
S
GIRVNDAEK
L
V
T
I
G
G
H
V
----------
L
R
E
G
E
W
L
S
L
N
G
S
T
G
E
V
I
L
-------------
6
PsiBlast_PDB
43.54
37%
-36
- C3 -
2E28
-
KPYK_GEOSE
A:
[489-579]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
G
K
A
V
V
-
A
-
K
T
A
E
E
A
------------------
R
Q
K
M
V
D
G
G
I
L
V
T
V
----
S
-
T
D
A
D
M
M
P
A
I
E
K
--
A
A
------
A
I
--
I
T
E
E
G
G
L
T
S
H
A
A
V
V
G
L
S
L
G
I
-
P
V
I
V
G
V
------------
E
------------
N
A
T
T
L
----------
F
K
D
G
Q
E
I
T
V
D
G
G
F
G
A
V
---------------
49
Fugue
43.00
16%
31
- C1 -
4KVM
11
NAT1_SCHPO
A:
[5-731]
------
Q
L
S
-----
P
-
K
E
I
T
L
F
R
T
A
L
K
C
Y
E
T
K
Q
Y
K
-
K
G
L
K
A
I
E
P
L
-------------------------------------------
L
E
-
R
---------------------------------
H
P
E
H
G
E
S
---------------
L
A
-------------------------
I
K
G
--------------------------------
I
L
L
H
S
L
G
N
T
-----------------------------------------------------------------------------------
K
---
E
G
Y
D
N
V
R
------
L
G
L
-------------------------------------------------------------------------
R
N
D
V
G
S
--------
G
V
C
W
H
-
I
F
G
L
-----
I
S
-------
R
-------
A
-------
D
K
D
Y
V
Q
A
A
K
C
Y
I
N
A
H
K
L
------
E
K
N
N
S
S
L
L
R
D
L
A
L
L
Q
S
Q
L
R
Q
Y
K
-----
A
-----
L
-----
A
D
T
R
N
A
L
L
Q
D
N
P
G
V
R
A
N
W
S
A
L
A
V
A
Q
F
L
R
G
E
--------------
Y
A
S
A
Y
K
-
I
V
D
A
F
E
S
T
I
----
N
Q
G
V
P
V
D
T
Q
E
E
S
E
-
A
M
L
F
M
N
L
V
I
---
L
K
K
--------
D
G
V
E
D
A
Y
K
H
L
L
S
I
E
K
K
V
L
D
R
V
A
F
L
E
T
R
A
E
Y
E
L
Y
L
S
K
M
E
E
A
K
S
T
I
Y
L
L
L
D
R
N
P
D
N
H
Q
Y
Y
Y
N
L
Q
R
A
Y
G
Y
E
D
A
S
G
K
V
L
D
S
A
E
W
L
N
L
Y
S
Q
L
A
K
R
--------------------
Y
P
K
S
E
C
P
T
R
L
P
L
E
K
L
E
G
D
E
F
L
T
H
V
D
L
Y
L
R
K
K
L
K
R
G
I
P
S
V
F
V
D
V
K
S
L
Y
K
D
T
K
K
C
K
V
V
E
D
L
V
S
K
Y
--
A
S
S
L
S
TT
N
K
F
S
E
D
D
D
N
S
Q
I
E
I
P
T
T
L
L
W
T
Y
Y
F
L
A
Q
H
F
D
H
V
G
E
--
L
E
K
A
E
K
Y
V
D
L
A
I
D
H
T
P
T
L
V
E
L
F
M
T
K
A
R
I
S
K
H
K
G
E
L
Q
T
A
M
E
I
M
D
H
A
-----
R
K
L
D
L
Q
D
R
F
I
N
G
K
C
A
K
Y
M
L
-----
R
N
D
E
N
E
L
A
A
K
T
V
SLFTRNEA
V
G
G
A
V
G
D
L
A
D
M
Q
C
L
W
Y
M
L
E
D
G
K
S
F
A
---
R
Q
K
K
F
A
L
A
L
K
R
F
S
T
V
F
K
I
F
D
T
W
A
D
D
Q
F
D
F
H
F
F
A
F
R
K
G
S
L
R
T
Y
L
D
L
M
S
W
E
D
----
S
V
Y
D
D
P
S
F
R
E
A
A
Q
G
S
I
E
I
Y
F
A
L
F
D
L
-
P
F
A
K
Y
S
P
K
L
P
D
F
E
K
L
S
S
G
--
E
I
N
E
E
E
E
K
K
I
Y
K
K
L
K
K
D
L
S
K
R
L
E
R
A
E
K
L
K
E
A
D
K
S
R
K
Y
D
E
D
P
L
G
E
N
L
V
A
T
S
E
-------
P
L
K
E
A
Q
K
C
L
E
K
L
L
P
Y
G
-------------
D
K
N
P
S
------------------
A
Y
-
I
L
A
A
Q
L
Y
T
R
L
----
K
-
N
F
D
T
A
S
K
Y
L
E
Q
--
A
K
------
V
I
--
L
G
Q
N
D
----------------
P
T
V
I
S
T
------------
E
------------
K
F
Y
N
S
----------
I
K
-----
T
Q
S
N
A
A
------------------
28
HHSearch
42.93
31%
-32
- C3 -
2E28
-
KPYK_GEOSE
A:
[474-583]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
D
L
L
A
K
G
Q
G
I
G
R
K
S
A
F
G
K
A
V
V
-
A
-
K
T
A
E
E
A
R
-----------------
Q
K
-
M
V
D
G
G
I
L
V
T
V
----
S
-
T
D
A
D
M
M
P
A
I
E
K
--
A
A
------
A
I
--
I
T
E
E
G
G
L
T
S
H
A
A
V
V
G
L
S
L
G
I
-
P
V
I
V
G
V
------------
E
------------
N
A
T
T
L
----------
F
K
D
G
Q
E
I
T
V
D
G
G
F
G
A
V
Y
R
G
H
-----------
5
PsiBlast_PDB
42.58
33%
19
- C2 -
5FBT
-
?
A:
[15-330]
------------------
S
E
A
L
V
G
G
K
G
M
N
L
G
A
C
S
N
I
E
G
V
H
V
P
A
G
F
C
L
T
T
E
A
Y
K
----------------E
F
T
Q
L
L
Q
RLA---------
I
R
-
E
---------------------------------
I
S
E
T
I
R
T
---------------
L
I
-------------------------
Q
H
T
--------------------------------
Q
I
P
S
E
I
A
S
Y
M
D
A
------
T
--------------------------------------------------------------------------------
M
P
F
A
------
V
-----------------------------------------------------------------------------------------------------------------------------------
L
L
Q
H
I
S
M
C
W
A
S
L
F
T
E
---------------
V
Q
L
A
V
V
I
Q
Q
M
I
S
P
-----
E
-----
A
-----
S
G
I
---
L
F
T
A
D
P
I
T
S
N
R
K
S
L
S
I
D
A
S
F
G
L
G
E
---
S
G
L
V
S
A
D
S
Y
T
V
R
E
N
T
I
--
T
N
K
I
I
A
T
K
K
L
A
---------
E
T
R
I
L
E
K
S
Q
Q
T
K
Q
T
L
T
---
D
Q
Q
I
I
Q
L
A
K
L
G
R
K
I
E
A
Y
F
G
K
P
Q
D
I
E
W
C
L
A
E
G
A
F
Y
I
V
Q
S
R
P
I
T
T
-
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
42.17
29%
-78
- C3 -
1VBH
-
PPDK1_MAIZE
A:
[398-510]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
P
A
S
P
G
A
A
V
G
Q
V
V
F
-
T
A
E
D
A
E
A
W
------------------
H
S
-
Q
G
K
A
A
I
L
V
R
A
----
E
-
T
S
P
E
D
V
G
G
M
H
A
--
A
V
------
G
I
--
L
T
E
---
M
T
S
H
A
A
V
V
A
R
G
W
G
K
-
C
C
V
S
G
C
------------
S
G
I
R
V
N
DAEK
L
V
T
I
G
G
H
V
----------
L
R
E
G
E
W
L
S
L
N
G
S
T
G
E
V
I
L
-------------
11
PsiBlast_PDB
41.05
30%
-58
- C3 -
1KBL
-
PPDK_CLOSY
A:
[395-504]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
A
S
P
G
A
A
A
G
K
V
Y
F
-
T
-
A
D
E
A
K
A
------------------
A
H
-
E
K
G
E
R
V
I
L
V
R
----
L
E
T
S
P
E
D
I
E
G
M
H
A
--
A
E
------
G
I
--
L
T
V
R
G
G
M
T
S
H
A
A
V
V
A
R
G
M
G
T
-
C
C
V
S
G
C
GEIKINEEAK
T
F
E
------------
L
G
G
H
T
----------
F
A
E
G
D
Y
I
S
L
D
G
S
T
G
K
I
---------------
7
PsiBlast_PDB
41.04
35%
-51
- C3 -
2X0S
-
?
A:
[422-530]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
A
A
S
P
G
A
A
V
G
Q
V
V
F
D
A
-
E
S
A
K
E
W
------------------
S
G
-
R
G
K
K
V
I
M
V
R
L
----
E
-
T
S
P
E
D
L
A
G
M
D
A
--
A
C
------
G
I
--
L
T
A
R
G
G
M
T
S
H
A
A
V
V
A
R
G
M
G
K
-
C
C
V
S
G
C
------------
G
------------
D
M
V
I
R
G
KSFKLNG
S
V
F
R
E
G
D
Y
I
T
I
D
G
S
K
G
L
I
---------------
13
PsiBlast_PDB
40.50
30%
-62
- C3 -
1JDE
-
PPDK_CLOSY
A:
[395-509]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
A
S
P
G
A
A
A
G
K
V
Y
F
-
T
-
A
D
E
A
K
A
------------------
A
H
-
E
K
G
E
R
V
I
L
V
R
----
L
E
T
S
P
E
D
I
E
G
M
H
A
--
A
E
------
G
I
--
L
T
V
R
G
G
M
T
S
H
A
A
V
V
A
R
G
M
G
T
-
C
C
V
S
G
C
GEIKINEEAK
T
F
E
------------
L
G
G
H
T
----------
F
A
E
G
D
Y
I
S
L
D
G
S
T
G
K
I
---------------
44
Fugue
39.71
22%
-59
- C3 -
2HI6
-
Y055_ARCFU
A:
[1-132]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
F
A
C
R
A
I
T
R
G
R
A
E
G
E
A
L
V
-
T
-
K
E
Y
I
S
F
LGGIDKETGIVKEDCEIK
G
E
-
S
V
A
G
R
I
L
V
F
P
GGKG
S
-
T
V
G
S
Y
V
L
L
N
L
R
--
K
N
GVAPK
A
I
I
--
N
K
K
T
E
T
I
I
A
V
G
A
A
M
A
---
E
I
-
P
L
V
E
V
R
D-----------
E
------------
K
F
F
E
A
----------
V
K
T
G
D
R
V
V
V
N
A
D
E
G
Y
V
E
L
I
E
-----------
22
PsiBlast_CBE
39.60
32%
-72
- C3 -
3EZE
1
PT1_ECOLI
A:
[157-229]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
L
V
A
A
----
D
-
L
T
P
S
E
T
A
Q
L
N
L
--
K
K
------
V
L
G
F
I
T
D
A
G
G
R
T
S
H
T
S
I
M
A
R
S
L
E
L
-
P
A
I
V
G
T
------------
G
------------
S
V
T
S
Q
----------
V
K
N
D
D
Y
L
I
L
D
A
V
N
N
Q
V
Y
V
-------------
8
PsiBlast_PDB
39.56
35%
-43
- C3 -
2WQD
-
PT1_STAAU
A:
[159-231]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
V
G
N
----
D
-
L
T
P
S
D
T
A
Q
L
N
K
EF
V
Q
------
G
F
--
A
T
N
I
G
G
R
T
S
A
S
A
I
M
S
R
S
L
E
I
-
P
A
I
V
G
T
------------
K
------------
S
I
T
Q
E
----------
V
K
Q
G
D
M
I
I
V
D
G
L
N
G
D
V
I
V
-------------