@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35220: (2016-07-29 )
MSVQWGIELLKSAGLFFLHPLFWFFIIITLAFGYVRIKRERKTFHTRIADIYDDLKFTYTKGLIPGLLLSVILGGLGISIPLGLLAIIAVITAAAAFTLRANWMSAAYIVSVSMLIGFGLQIYQAEPFLERFPQGFAVVWPAVAVFLGLLIITEGAVAYRSAHVRTSPALVVSSRGLPIGQQLANRVWLLPLFLLVPGNGLESHLSWWPVFTVPGGSFHFLWIPYFVGFGQRVQGSLPETSIRITAKRVCILGLAVAVLGAASLLWTPLAGAAVCTALLGRIFLSIKQRVNDNAAPFYFSKRDQGLMVLGIIPNTPAEDLELKIGEIITKVNGIPVKNVSDFYEALQHNRAYVKLEIIGLNGEIRFDQRASYEGEHHELGILFVKDDREDEAVASGS
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300-----------------.--.-.-----......310.......320.-----------.-----------.....330......--.340.......--350........360.......370-........380.......390.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MS
V
Q
W
G
I
E
L
L
K
SA
G
L
F
F
L
H
P
L
F
W
F
F
I
I
I
T
L
A
F
G
Y
V
R
I
K
RER
K
T
F
H
T
R
I
A
D
I
Y
D
D
L
K
F
T
Y
TKGL
I
P
G
L
L
L
S
V
I
L
GGLGIS
I
P
L
G
L
L
A
I
I
A
V
I
T
A
A
A
A
F
T
L
RANWM
S
A
A
Y
I
V
S
V
S
M
L
I
GFG
L
Q
I
YQA
E
P
F
L
E
RFPQGF
A
V
V
W
P
A
V
A
V
F
L
G
L
L
I
ITEGA
V
A
Y
RSAHVRTS
P
A
L
V
V
SSRGL
P
I
G
Q
Q
L
A
N
R
V
W
L
L
P
L
F
L
L
VPGN
G
L
E
S
HLSW
W
P
V
F
T
VPGG
S
F
H
F
L
W
I
P
Y
FVGF
G
Q
R
VQGSLPE
T
S
I
R
I
T
A
K
R
V
C
I
L
G
L
A
V
A
V
L
G
A
A
S
L
L
WTPLA
G
A
A
V
C
T
A
L
L
G
R
I
F
L
S
I
K
Q
R
VNDNAAP
F
Y
F
S-------------------K--R-D-----Q
G
L
M
V
L
G
IIPNTPA
E
D
L
E
L
K
-----------
I
-----------
G
E
I
I
T
KVNGIPVK
N
--
V
S
D
F
Y
E
A
L
QHN--R-
A
Y
V
K
L
E
I
I
GLN
G
E
I
R
F
DQRAS--YEGEH
H
E
L
G
I
L
F
V
KDDREDEAVASGS
90
HHSearch
65.59
29%
-94
- C1 -
4RI0
1
HTRA3_HUMAN
A:
[253-322]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
S
-----
S
G
I
Y
V
Q
E
V
A
P
N
S
P
S
Q
R
G
G
I
Q
-----------
D
-----------
G
D
I
I
V
K
V
N
G
R
P
L
V
D
--
S
S
E
L
Q
E
A
V
L
T
---
E
-
S
P
L
L
L
E
V
R
R
G
N
D
D
L
L
F
S
I
A
P
E
--
V
-------------------------
102
HHSearch
59.67
27%
-98
- C1 -
3PV2
-
?
A:
[269-336]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-----
Q
G
A
L
V
S
Q
V
N
P
N
S
P
A
E
L
A
G
L
K
-----------
A
-----------
G
D
I
I
T
Q
I
N
D
T
K
I
T
Q
--
A
T
Q
V
K
T
T
I
S
L
L
RV
G
-
S
T
V
K
I
I
V
E
R
D
N
K
P
L
T
L
S
A
-------------------------------
97
HHSearch
57.43
21%
-151
- C1 -
1LCY
-
HTRA2_HUMAN
A:
[254-320]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
-
Q
-----
H
G
V
L
I
H
K
V
I
L
G
S
P
A
H
R
A
G
L
R
-----------
P
-----------
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
--
A
E
D
V
Y
E
A
V
R
T
---
Q
-
S
Q
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
------------------------------
73
Fugue
56.37
16%
-22
- C1 -
2PZD
2
HTRA2_HUMAN
A:
[5-113]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
Y
I
G
V
M
M
L
T
L
S
P
S
I
L
A
E
L
Q
L
R
-------------------
E
--
P
-
S
FPDVQ
H
G
V
L
I
H
K
V
I
L
G
S
P
A
H
R
A
G
L
R
-----------
P
-----------
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
--
A
E
D
V
Y
E
A
V
R
T
Q
--
S
-
Q
-
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
P
E
--
V
T
G
W
T
M
F
W
V
-----------------
1
PsiBlast_PDB
56.20
35%
-110
- C1 -
4RI0
1
HTRA3_HUMAN
A:
[250-297]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
P
-------------------
E
--
V
-
S
-----
S
G
I
Y
V
Q
E
V
A
P
N
S
P
S
Q
R
G
G
I
Q
-----------
D
-----------
G
D
I
I
V
K
V
N
G
R
P
L
V
D
--
S
S
E
L
Q
E
A
V
--------------------------------------------------------
91
HHSearch
55.93
32%
-23
- C1 -
3QO6
1
DEGP1_ARATH
A:
[251-331]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
V
L
V
L
D
A
P
P
S
G
P
A
G
K
A
G
L
Q
-----------
S
T
KRDGYGRLVL
G
D
I
I
T
S
V
N
G
T
K
V
S
N
--
G
S
D
L
Y
R
I
L
D
Q
C
KV
G
-
D
E
V
T
V
E
V
L
R
G
D
H
K
E
K
I
S
V
T
L
E
----------------------------
89
HHSearch
55.30
21%
-147
- C1 -
3PV2
-
?
A:
[374-434]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
V
Q
V
V
G
A
S
E
N
S
A
G
W
R
A
G
I
R
-----------
P
-----------
G
D
I
I
I
S
A
N
K
K
P
V
T
D
--
V
K
S
L
Q
T
I
A
Q
E
K
--
K
-
K
E
L
L
V
Q
V
L
R
G
P
G
S
M
-----------------------------------
4
PsiBlast_PDB
55.03
32%
-111
- C1 -
3MH6
-
DEGP_ECOLI
A:
[381-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
-----
Q
G
V
V
V
N
N
V
K
T
G
T
P
A
A
Q
I
G
L
K
-----------
K
-----------
G
D
V
I
I
G
A
N
Q
Q
A
V
K
N
--
I
A
E
L
R
K
V
L
D
S
K
--
P
-
S
V
L
A
L
N
I
------------------------------------------
87
HHSearch
54.68
28%
-10
* C1 *
4IC6
-
DEGP8_ARATH
A:
[363-444]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
-----
N
G
A
L
V
L
Q
V
P
G
K
S
L
A
E
K
A
G
L
H
-----------
P
T
S
R
G
FAGNIVL
G
D
I
I
V
A
V
D
D
K
P
V
K
N
--
K
A
E
L
M
K
I
L
D
E
Y
SV
G
-
D
K
V
T
L
K
I
K
R
G
N
E
D
L
E
L
K
I
S
L
E
----------------------------
51
PsiBlast_CBE
54.62
32%
-159
- C1 -
2JOA
1
A:
[36-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
Y
I
I
E
V
I
P
D
T
P
A
E
A
G
G
L
K
-----------
E
-----------
N
D
V
I
I
S
I
N
G
Q
S
V
V
S
--
A
N
D
V
S
D
V
I
K
-------------------------------------------------------
74
Fugue
54.53
15%
-32
- C1 -
2F5Y
2
RGS3_HUMAN
A:
[2-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
Y
R
Q
I
T
I
P
R
G
K
D
G
F
G
F
T
-------------------
I
--
C
C
D
-----
S
P
V
R
V
Q
A
V
D
S
G
G
P
A
E
R
A
G
L
Q
-----------
Q
-----------
L
D
T
V
L
Q
L
N
E
R
P
V
E
H
WK
C
V
E
L
A
H
E
I
R
S
C
--
P
-
S
E
I
I
L
L
V
W
R
M
V
--------------------------------------
45
PsiBlast_CBE
54.47
31%
-41
- C1 -
3QO6
1
DEGP1_ARATH
A:
[252-321]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
L
V
L
D
A
P
P
S
G
P
A
G
K
A
G
L
Q
S
T
KRDGYGRLV
L
-----------
G
D
I
I
T
S
V
N
G
T
K
V
S
N
--
G
S
D
L
Y
R
I
L
D
Q
C
--
K
-
V
G
D
E
V
T
V
E
V
L
R
G
D
------------------------------------
44
PsiBlast_CBE
53.56
31%
-42
- C1 -
3QO6
1
DEGP1_ARATH
B:
[252-321]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
L
V
L
D
A
P
P
S
G
P
A
G
K
A
G
L
Q
S
T
K
R
DGYGRLV
L
-----------
G
D
I
I
T
S
V
N
G
T
K
V
S
N
--
G
S
D
L
Y
R
I
L
D
Q
C
--
K
-
V
G
D
E
V
T
V
E
V
L
R
G
D
------------------------------------
43
PsiBlast_CBE
53.44
31%
-29
- C1 -
3QO6
1
DEGP1_ARATH
C:
[252-321]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
L
V
L
D
A
P
P
S
G
P
A
G
K
A
G
L
Q
STKRDGYGRLV
L
-----------
G
D
I
I
T
S
V
N
G
T
K
V
S
N
--
G
S
D
L
Y
R
I
L
D
Q
C
--
K
-
V
G
D
E
V
T
V
E
V
L
R
G
D
------------------------------------
6
PsiBlast_PDB
52.28
32%
-115
- C1 -
3MH7
-
DEGP_ECOLI
A:
[381-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
-----
Q
G
V
V
V
N
N
V
K
T
G
T
P
A
A
Q
I
G
L
K
-----------
K
-----------
G
D
V
I
I
G
A
N
Q
Q
A
V
K
N
--
I
A
E
L
R
K
V
L
D
S
K
--
P
-
S
V
L
A
L
N
I
------------------------------------------
94
HHSearch
52.10
20%
-36
- C1 -
3WKM
-
Y1964_AQUAE
A:
[206-289]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
-----
V
K
P
V
V
G
G
V
K
K
G
S
P
A
D
Q
V
G
I
K
-----------
P
-----------
G
D
L
I
L
E
V
N
G
K
K
I
N
T
--
W
Y
E
L
V
E
E
V
R
K
S
--
Q
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
P
A
K
D
P
K
T
G
T
Y
F
I
G
L
F
P
--------------
7
PsiBlast_PDB
51.94
32%
-125
- C1 -
3CS0
-
DEGP_ECOLI
A:
[381-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
-----
Q
G
V
V
V
N
N
V
K
T
G
T
P
A
A
Q
I
G
L
K
-----------
K
-----------
G
D
V
I
I
G
A
N
Q
Q
A
V
K
N
--
I
A
E
L
R
K
V
L
D
S
K
--
P
-
S
V
L
A
L
N
I
------------------------------------------
8
PsiBlast_PDB
51.62
32%
-117
- C1 -
3OU0
-
DEGP_ECOLI
A:
[381-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
-----
Q
G
V
V
V
N
N
V
K
T
G
T
P
A
A
Q
I
G
L
K
-----------
K
-----------
G
D
V
I
I
G
A
N
Q
Q
A
V
K
N
--
I
A
E
L
R
K
V
L
D
S
K
--
P
-
S
V
L
A
L
N
I
------------------------------------------
2
PsiBlast_PDB
51.40
32%
-117
- C1 -
3OTP
-
DEGP_ECOLI
A:
[381-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
-----
Q
G
V
V
V
N
N
V
K
T
G
T
P
A
A
Q
I
G
L
K
-----------
K
-----------
G
D
V
I
I
G
A
N
Q
Q
A
V
K
N
--
I
A
E
L
R
K
V
L
D
S
K
--
P
-
S
V
L
A
L
N
I
------------------------------------------
81
HHSearch
51.01
18%
59
- C1 -
2L97
-
?
A:
[3-125]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
G
F
A
I
P
A
N
D
A
I
N
I
I
E
Q
L
E
K
N
-
G
K
V
----
T
R
P
A
L
G
I
Q
M
V
N
LSNVS
T
S
D
I
R
R
L
NI
P
SN
V
-
T
-----
S
G
V
I
V
R
S
V
Q
S
N
M
P
A
N
-
G
H
L
E
-----------
K
-----------
Y
D
V
I
T
K
V
D
D
K
E
I
A
S
--
S
T
D
L
Q
S
A
L
Y
N
H
SI
G
-
D
T
I
K
I
T
Y
Y
R
N
G
K
E
E
T
T
S
I
K
L
N
----------------------------