@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35860: (2016-07-30 )
MNTLANWKKFLLVAVIICFLVPIMTKAEIAEADTSSELIVSEAKNLLGYQYKYGGETPKEGFDPSGLIQYVFSKADIHLPRSVNDQYKIGTAVKPENLKPGDILFFKKEGSTGTVPTHDALYIGDGQMVHSTQSKGVIITNYKKSSYWSGTYIGARRIAADPATADVPVVQEAEKYIGVPYVFGGSTPSEGFDCSGLVQYVFQQALGIYLPRSAEQQWAVGEKVAPQNIKPGDVVYFSNTYKTGISHAGIYAGAGRFIQASRSEKVTISYLSEDYWKSKMTGIRRFDNLTIPKENPIVSEATLYVGEVPYKQGGVTPETGFDTAGFVQYVYQKAAGISLPRYATSQYNAGTKIEKADLKPGDIVFFQSTSLNPSIYIGNGQVVHVTLSNGVTITNMNTSTYWKDKYAGSIRVQ
Atome Classification :
(20 SA)
-.........10........20........30.-------......-.40........50........60........70........80........90........100.......110.......120.......130..----.....140...------....150.......160......--------.170........180.......190.......200.......210.......220....-...230.......240..--.....250.......260-...----....270.......280.......290.......300.......310.....------------..320.......330.......340.......350.......360....-...---370.......380......----.390......------.400.......410.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-MN
T
L
A
N
W
K
K
F
L
L
V
A
V
I
I
C
F
L
V
P
IM
T
K
A
E
IAEA-------DTS
S
E
L
-
I
V
S
E
A
K
N
LL
G
Y
Q
Y
KYGGETPKEGF
D
P
S
G
L
I
Q
Y
V
F
SKADIHLPRSVNDQYKIGTAVKPENLKPG
D
I
L
F
F
KKEGSTGTVPTHD
A
L
Y
IGDG
Q
M
V
H
STQS----K
G
V
I
I
T
N
YKKS------SYWS
G
T
Y
IG
A
R
RIAADPATADV
P
--------
V
V
-
Q
E
A
E
K
YIGV
P
Y
V
FGGSTPSEGF
D
C
S
G
L
V
Q
Y
V
F
Q
Q
A
L
G
IYLPRSAEQQWAVGEKVAP-QNIKPG
D
V
V
Y
FSNTYKTG--ISHAGIYAGAG
R
F
I
QASR-S
E
K
----
V
T
I
S
Y
L
S
E
D
Y
W
K
S
K
M
TGIRRFDNLTIPKENPIVSE
A
T
L
Y
V
GEVPYKQGGVTP------------ETGFD
T
A
G
F
V
Q
Y
V
Y
Q
K
AAGISLPRYATSQYNAGT
K
I
E
KADLKPG
D
I
V
F
F
-QST---SLN
P
S
I
Y
IGN
G
Q
V
V
H
V
T
LS----N
G
V
T
I
T
NMNT------S
T
Y
W
KDKYA
G
S
I
RVQ
31
HHSearch
64.72
37%
-127
* C4 *
4FDY
-
?
A:
[215-339]
----------------------------------------
D
E
T
V
Q
V
-
I
M
D
E
A
L
K
Y
E
G
F
P
Y
V
F
G
G
A
S
P
T
T
S
F
D
-
S
G
L
I
Q
W
V
Y
D
K
A
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
S
M
E
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
T
Y
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
G
D
------
P
I
G
Y
G
D
L
S
-
S
------
R
Y
W
Q
D
H
L
I
G
A
R
R
V
I
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.58
38%
-73
- C4 -
4FDY
-
?
A:
[221-336]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
-
D
E
A
L
K
Y
E
G
F
P
Y
V
F
G
G
A
S
P
T
T
S
F
D
-
S
G
L
I
Q
W
V
Y
D
K
A
-
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
S
M
-
E
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
TY
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
---
G
D
P
----
I
G
Y
G
D
L
S
S
R
Y
W
Q
D
H
L
I
G
A
R
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.49
41%
-95
- C4 -
2K1G
-
MEPS_ECOLI
A:
[44-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
-
D
Q
Y
A
D
W
K
G
V
R
Y
R
L
G
G
S
T
-
K
K
G
I
D
C
S
G
F
V
Q
R
T
F
R
E
Q
F
G
L
E
L
P
R
S
T
Y
E
Q
Q
E
M
G
K
S
V
S
R
-
S
N
L
R
T
G
D
L
V
L
F
-
R
A
G
S
T
G
---
R
H
V
G
I
Y
I
G
N
N
Q
F
V
H
A
S
T
-
S
S
G
----
V
I
I
S
S
M
N
E
P
Y
W
K
K
R
Y
N
E
A
R
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
58.43
35%
-94
- C4 -
4XCM
-
?
A:
[130-243]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--------
L
L
-
R
A
V
L
R
Y
L
G
V
P
Y
K
Y
G
A
N
S
P
L
-
A
L
D
C
S
A
F
V
A
Q
V
Y
A
E
-
L
G
V
A
L
P
R
T
T
K
E
Q
Y
Q
A
F
P
P
V
---
E
A
P
R
P
G
D
L
V
F
F
S
F
G
G
K
E
---
V
D
H
V
G
I
Y
L
G
R
G
V
F
A
H
A
S
S
Y
G
S
R
----
V
V
I
E
S
L
E
A
P
F
Y
R
K
V
Y
R
G
A
R
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
58.07
32%
-58
- C4 -
2HBW
3
?
A:
[103-229]
---------------------------------------------
A
-
F
T
Q
K
A
M
Q
Q
-
S
N
Y
Y
L
W
G
G
T
V
G
-
P
N
Y
D
C
S
G
L
M
Q
A
A
F
V
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
A
F
T
Q
A
I
T
I
D
E
L
A
P
G
D
L
V
F
F
G
T
P
V
----
K
A
T
H
V
G
L
Y
L
G
D
G
C
Y
I
H
S
S
G
K
AQGR
D
G
I
G
I
D
I
L
S
E
Q
GD
V
V
S
R
S
Y
Y
-
Q
Q
L
R
G
A
G
R
V
V
K
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
55.22
35%
-94
- C4 -
2EVR
3
?
A:
[126-218]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
W
G
G
-
T
V
G
P
N
Y
D
C
S
G
L
M
Q
A
A
F
A
-
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
G
F
T
Q
P
I
T
I
-
A
E
L
V
A
G
D
L
V
F
F
G
T
S
Q
K
A
----
T
H
V
G
L
Y
L
A
D
G
Y
Y
I
H
S
S
G
-
K
D
Q
GRD
G
I
G
I
D
I
L
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
55.05
35%
-98
- C4 -
2FG0
2
?
A:
[126-218]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
W
G
G
-
T
V
G
P
N
Y
D
C
S
G
L
M
Q
A
A
F
A
-
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
G
F
T
Q
P
I
T
I
-
A
E
L
V
A
G
D
L
V
F
F
G
T
S
Q
K
A
----
T
H
V
G
L
Y
L
A
D
G
Y
Y
I
H
S
S
G
-
K
D
Q
GRD
G
I
G
I
D
I
L
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
54.89
30%
-87
- C4 -
4XCM
-
?
A:
[127-246]
------------------------------------------
P
E
S
P
-
L
L
R
A
V
L
R
Y
L
G
V
P
Y
K
Y
G
A
N
S
P
-
L
A
L
D
C
S
A
F
V
A
Q
V
Y
A
E
L
G
V
A
L
P
R
T
T
K
E
Q
Y
Q
A
F
P
--
P
V
E
A
P
R
P
G
D
L
V
F
F
S
F
G
G
---
K
E
V
D
H
V
G
I
Y
L
G
R
G
V
F
A
H
A
S
S
Y
G---
S
R
V
V
I
E
S
L
E
-
A
------
P
F
Y
R
K
V
Y
R
G
A
R
R
V
M
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
54.72
36%
-70
- C4 -
2K1G
-
MEPS_ECOLI
A:
[39-158]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
K
S
R
I
M
D
Q
Y
A
D
W
K
G
-
V
R
Y
R
L
G
G
S
T
K
-------------
K
G
I
D
C
S
G
F
V
Q
R
T
F
R
E
Q
F
G
L
E
L
P
R
S
T
Y
E
Q
Q
E
M
G
K
S
V
S
R
S
N
L
R
T
G
D
L
V
L
F
-
R
A
G
ST-
G
R
H
V
G
I
Y
I
G
N
N
Q
F
V
H
A
S
T
S
----
S
G
V
I
I
S
S
M
-
N
------
E
P
Y
W
K
K
R
Y
N
E
A
R
R
V
-
11
PsiBlast_PDB
54.54
38%
-91
- C4 -
2HBW
3
?
A:
[115-207]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
W
G
G
-
T
V
G
P
N
Y
D
C
S
G
L
M
Q
A
A
F
V
-
S
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
A
F
T
Q
A
I
T
I
-
D
E
L
A
P
G
D
L
V
F
F
G
T
P
V
K
A
----
T
H
V
G
L
Y
L
G
D
G
C
Y
I
H
S
S
G
-
K
A
Q
GRD
G
I
G
I
D
I
L
S
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
54.38
28%
-77
- C4 -
2HBW
3
?
A:
[103-227]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
Q
K
A
M
Q
Q
-
S
-
N
Y
Y
L
W
G
G
T
V
G
-------------
P
N
Y
D
C
S
G
L
M
Q
A
A
F
V
S
-
V
G
I
W
L
P
R
D
A
Y
Q
Q
E
A
F
T
Q
A
I
T
I
D
E
L
A
P
G
D
L
V
F
F
-
G
T
P
VK-
A
T
H
V
G
L
Y
L
G
D
G
C
Y
I
H
S
S
G
K
AQGR
D
G
I
G
I
D
I
L
S
E
QGD
V
V
S
R
S
Y
Y
-
Q
Q
L
R
G
A
G
R
V
V
38
HHSearch
53.54
34%
-20
- C4 -
4Q4G
-
X:
[1079-1195]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
S
E
Y
V
I
R
R
G
M
S
Q
I
G
-
V
P
Y
S
W
G
G
G
N
A
AGPSKGIDSGAG
T
V
G
F
D
A
S
G
L
V
L
Y
S
F
A
G
-
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
S
S
Q
M
R
R
G
D
V
I
F
Y
-
G
P
N
G--
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
A
P
D
V
G---
L
K
V
R
V
A
P
V
-----------------------
6
PsiBlast_PDB
53.36
44%
-120
- C- -
4LJ1
-
?
A:
[80-153]
---------------------------------------------------------------------
G
F
D
A
S
G
L
I
Q
Y
A
Y
A
G
A
G
L
K
L
P
R
S
S
G
Q
M
Y
K
V
G
Q
K
V
L
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
P
E
G
T
Q
S
V
-----
A
L
Y
L
G
K
G
Q
M
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
52.87
37%
-130
- C4 -
3GT2
2
?
A:
[53-117]
---------------------------------------------------------------------
G
F
D
A
S
G
L
M
Q
Y
A
Y
A
G
A
G
I
K
L
P
R
S
S
G
A
M
Y
R
V
G
Q
K
I
L
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
P
E
G
T
Q
S
V
-----
A
M
Y
L
G
N
N
Q
M
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
51.79
42%
-116
- C4 -
4Q4N
-
A:
[1118-1182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
D
C
S
G
L
V
L
Y
S
F
-
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
S
S
Q
M
R
R
G
D
V
I
F
Y
G
P
N
G
---
S
Q
A
V
T
I
Y
L
G
N
G
Q
M
L
E
---------------------------------------
14
PsiBlast_PDB
51.77
42%
-108
- C4 -
4Q4G
-
X:
[1118-1182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
F
D
A
S
G
L
V
L
Y
S
F
-
A
G
V
G
I
K
L
P
H
Y
S
G
S
Q
Y
N
L
G
R
K
I
P
S
S
Q
M
R
R
G
D
V
I
F
Y
G
P
N
G
---
S
Q
H
V
T
I
Y
L
G
N
G
Q
M
L
E
---------------------------------------
52
Fugue
51.47
22%
37
- C- -
4FDY
-
?
A:
[46-340]
G
V
T
V
S
P
E
V
L
A
H
R
P
L
I
E
K
Y
G
K
E
Y
G
I
E
D
Y
V
S
Y
I
L
A
I
M
Q
V
E
SG
G
T
A
E
D
V
M
Q
S
S
E
S
L
G
L
-----------
P
P
N
S
L
S
T
E
E
S
I
K
Q
G
V
K
Y
F
S
E
L
L
T
S
A
E
Q
Q
G
V
D
I
D
S
V
I
Q
S
Y
N
Y
G
G
G
F
L
N
Y
V
R
S
H
G
K
K
Y
T
Y
E
L
A
E
Q
F
S
K
E
K
S
G
G
Q
K
A
D
Y
P
----
N
P
I
A
I
P
V
N
G
G
W
------
R
Y
N
Y
G
N
Q
F
Y
V
Q
L
V
S
Q
Y
L
T
D
T
S
P
T
EFD
D
E
T
V
Q
V
I
M
D
E
A
L
K
Y
E
G
F
P
Y
V
F
G
G
A
S
P
T
T
-
S
F
D
S
G
L
I
Q
W
V
Y
D
K
A
-
G
I
S
L
P
R
V
A
Q
D
Q
Y
D
A
T
Q
E
I
-
S
M
E
E
A
Q
A
G
D
L
I
F
F
H
S
T
Y
N
A
G
TY
V
T
H
V
A
I
Y
L
E
G
N
R
F
Y
H
A
G
---
D
P
----
I
G
Y
G
D
L
S
S
R
Y
W
Q
D
H
L
I
G
A
R
R
V
I
H
N
------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
51.09
44%
-104
- C4 -
4JXB
3
?
B:
[45-109]
---------------------------------------------------------------------
G
F
D
A
S
G
L
I
Q
Y
A
Y
A
G
A
G
L
K
L
P
R
S
S
G
Q
M
Y
K
V
G
Q
K
V
L
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
P
E
G
T
Q
S
V
-----
A
L
Y
L
G
K
G
Q
M
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
50.62
44%
-110
- C4 -
4JXB
3
?
A:
[45-109]
---------------------------------------------------------------------
G
F
D
A
S
G
L
I
Q
Y
A
Y
A
G
A
G
L
K
L
P
R
S
S
G
Q
M
Y
K
V
G
Q
K
V
L
P
Q
Q
A
R
K
G
D
L
I
F
Y
G
P
E
G
T
Q
S
V
-----
A
L
Y
L
G
K
G
Q
M
L
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
50.46
34%
-93
- C4 -
4XCM
-
?
A:
[126-245]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
P
E
S
P
L
L
R
A
V
L
R
Y
L
G
-
V
P
Y
K
Y
G
A
N
S
P
-------------
L
A
L
D
C
S
A
F
V
A
Q
V
Y
A
E
-
L
G
V
A
L
P
R
T
T
K
E
Q
Y
Q
A
F
P
--
P
V
E
A
P
R
P
G
D
L
V
F
F
-
S
F
G
GKE
V
D
H
V
G
I
Y
L
G
R
G
V
F
A
H
A
S
S
Y
G---
S
R
V
V
I
E
S
L
-
E
------
A
P
F
Y
R
K
V
Y
R
G
A
R
R
V
M