@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu38280: (2016-08-03 )
MARGLALILFSLLMVFGSAAHAEDDPIAALIQLNKQMIKSVKDGDMDSAQQTFDTFKAKWKKEEPSIKKENLSSHSEMDANIAMISLSFINQDARKLKTQLEELASHLETYQQAVVLKKTSSGQSRASLTAYIQSLKDTKQFIEKKQLDEASSAIDNLVTSWLAVEGDVVSQSKEAYTTSEENLALMKAEIGSHPEKVSKQIDEMIQLLEPIASSSYSWWDAALIPVREGMEALLVIGALLTMTKKARVTRSSTWIWGGASAGMAVSLAAGIGVTVLFSSSVFGENNFLLGGVTGVLSAVMLLYVGVWLHRNASMDKWREKINIQKSQALKKRSLLSFALIAFLAVVREGLETVIFFIGLVGKLPLTELIGGTAAGLIVLVIVGVLMIKLGMRIPLKPFFLLSMAVVLYMCVKFLGTGVHSLQLAGILPSDAESWLPSVSVLGIYPSVYSTIPQMLILLFLLIALVSEAAKHFTNGKELTK
Atome Classification :
(20 SA)
.........10........20........30........----40........50........60.......--.---------70.....----------------...80........90----........100.......110--......-------.------.120---..-.--......130.....----..----140....-----...150...--.-...160----------........--.---------170........180.......--190...-----....200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MAR
G
L
A
L
I
L
F
S
L
L
M
V
FGSAAHAED
D
P
I
A
A
L
I
Q
L
N
K
Q
M
I
K
----
S
VKDGD
M
D
S
A
Q
Q
T
F
D
T
F
K
A
KWKKEEPSI
K
--
K
---------ENLSSHS----------------EMDA
N
I
A
M
I
S
L
S
F
I
N
----
Q
D
A
R
K
L
K
T
Q
L
E
E
L
A
S
H
L
E
T
Y
---
Q
Q
A
V
V
L
-------
K
------KT-----SS-G--Q
S
R
A
S
L
T
A
Y
I
Q
S
L
K
----
D
T
----
K
Q
F
I
E
K
K
-----
Q
L
D
E
A
S
S
A
I
--
D
-
N
L
V
T
------------
S
W
L
AVEGD--V---------VS-QSKEAYTTSEE
N
L
A
L
M
K
A
--
E
IGS
H
P
-----
E
K
V
S
K
Q
I
D
E
M
I
Q
L
L
E
P
I
A
SSSYSW
W
D
A
A
L
I
P
V
R
E
G
M
E
A
L
L
V
I
G
A
L
L
T
M
T
K
K
A
R
VTRS
S
T
W
I
WGGASA
G
M
A
V
S
L
AAG
I
G
V
T
V
L
F
S
S
SVFGEN
N
F
L
L
G
G
V
T
G
V
L
S
A
V
M
L
L
Y
V
G
V
W
LHRNA
S
M
D
K
W
R
E
K
IN
I
Q
K
S
Q
A
L
K
K
R
S
L
L
S
F
A
L
I
A
F
L
A
V
V
R
E
G
L
E
T
V
I
F
F
I
G
L
VGKL
P
L
T
E
L
IGG
T
A
A
G
L
I
V
L
V
I
V
G
V
L
M
I
K
LGMRIPL
K
P
F
F
L
L
S
M
A
V
V
L
Y
M
C
V
K
F
L
GTGVH
S
L
Q
L
AGILPS
D
A
E
S
WLPS
V
S
V
L
GI
Y
P
S
V
Y
S
T
I
P
Q
M
L
I
L
L
F
L
L
I
A
L
V
S
E
A
A
K
HFTNGKELTK
29
HHSearch
59.86
7%
-67
- C3 -
3IQC
-
?
A:
[23-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
E
M
L
Y
E
G
I
L
R
F
S
S
----
Q
A
----
K
R
C
I
E
N
E
-----
D
I
E
K
K
I
Y
Y
I
--
N
-
R
V
T
D
------------
I
F
T
E
L
L
N
I
--
L
---------
D
Y
E
K
G
G
E
V
A
V
Y
L
T
G
L
Y
T
H
Q
I
K
--
V
L
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
56.21
22%
79
- C3 -
3TKL
-
?
B:
[75-236]
----------------------------------------------------------------------------------------------------------------
S
E
E
L
S
L
S
E
I
N
----
E
K
M
K
A
F
S
K
D
S
E
K
L
T
Q
L
M
E
K
H
KGD
E
K
T
V
Q
S
-------
L
------
Q
R
-----
E
H
-
H
--
D
I
K
A
K
L
-
A
N
L
Q
V
L
H
----
D
A
H
T
GK
K
S
Y
V
N
E
K
GNPVS
S
L
K
D
A
H
L
A
I
N
K
D
-
Q
E
V
V
E
H
KG
Q
F
Y
L
L
Q
KG
Q
W
D
A
I
K
N
D
P
A
A
---------
L
E
-
K
A
Q
K
D
Y
S
Q
S
K
H
D
L
A
T
I
K
M
--
E
A
L
I
H
K
L
S
L
E
M
E
K
Q
L
E
T
I
N
D
L
I
M
S
T
D
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
47
Fugue
55.62
13%
-18
- C3 -
3AJW
1
FLIJ_SALTY
A:
[6-141]
--------------------------------------------------------------------
Q
H
G
A
--
L
---------
E
T
L
K
D
L
A
----------------
E
K
E
V
D
D
A
A
R
L
L
G
E
M
R
----
R
G
C
Q
Q
A
E
E
Q
L
K
M
L
I
D
Y
Q
N
E
Y
---
R
S
N
L
N
M
-------
G
------
N
G
-----
I
A
-
S
--
N
R
W
I
N
Y
Q
Q
F
I
Q
T
L
E
----
K
A
----
I
E
-
Q
H
R
L
-----
Q
L
T
Q
W
T
Q
K
V
--
D
-
L
A
L
K
------------
S
W
R
E
K
K
Q
R
--
L
---------
Q
A
-
W
Q
T
L
Q
D
R
Q
T
A
A
A
L
L
A
E
N
R
--
M
D
Q
K
K
M
-----
D
E
F
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
52.55
22%
107
- C3 -
4H5Y
-
?
A:
[195-418]
-----------------------
D
K
E
I
Q
K
M
L
D
E
Y
E
Q
A
I
K
R
A
Q
E
N
I
K
K
G
E
--
E
L
E
K
K
L
D
K
L
E
R
Q
G
K
D
L
E
D
K
Y
K
T
Y
E
---------
E
N
L
E
G
F
E
----------------
K
L
L
T
D
S
E
E
L
S
L
S
E
I
N
----
E
K
M
K
A
F
S
K
D
S
E
K
L
T
Q
L
M
E
K
H
KGD
E
K
T
V
Q
S
-------
L
------
Q
R
-----
E
H
-
H
--
D
I
K
A
K
L
-
A
N
L
Q
V
L
H
----
D
A
H
T
GK
K
S
Y
V
N
E
K
GNPVS
S
L
K
D
A
H
L
A
I
N
K
D
-
Q
E
V
V
E
H
KG
Q
F
Y
L
L
QKG
Q
W
D
A
I
K
N
D
P
A
A
---------
L
E
-
K
A
Q
K
D
Y
S
Q
S
K
H
D
L
A
T
I
K
M
--
E
A
L
I
H
K
L
S
L
E
M
E
K
Q
L
E
T
I
N
D
L
I
M
S
T
D
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
48.89
8%
48
- C3 -
4TQL
-
?
A:
[9-239]
----------------
Y
K
Q
M
V
Q
E
L
E
K
A
R
D
R
M
E
K
L
Y
K
E
M
V
----
E
L
I
Q
K
A
I
E
L
M
R
K
I
F
Q
E
V
K
Q
E
V
E
K
A
I
E
E
M
K
--
K
---------
L
Y
D
E
A
K
K
----------------
K
I
E
Q
M
I
Q
Q
I
K
Q
G
G
D
K
----
Q
K
M
E
E
L
L
K
R
A
K
E
E
M
K
K
V
K
D
K
---
M
E
K
L
L
E
-------
K
L
-----
K
Q
-----
I
M
-
Q
--
E
A
K
Q
K
M
E
K
L
L
K
Q
L
K
----
E
E
----
M
K
K
M
K
E
K
-----
M
E
K
L
L
K
E
M
K
--
Q
-
R
M
E
E
------------
V
K
K
K
M
D
D
E
--
L
---------
L
E
-
K
I
K
K
N
I
D
D
L
K
K
I
A
E
D
L
I
K
--
K
A
E
E
N
I
-----
K
E
A
K
K
I
A
E
Q
L
V
K
R
A
K
Q
L
I
E
K
A
K
Q
V
A
E
E
L
I
K
K
I
L
Q
L
I
E
K
A
K
E
I
A
E
K
V
L
K
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
48.06
29%
29
- C3 -
3DSS
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
Q
A
E
A
K
R
L
E
R
E
Q
K
L
K
L
Y
Q
S
A
T
----
Q
A
V
F
Q
K
R
-----
Q
A
G
E
L
D
E
S
V
--
L
-
E
L
T
S
------------
Q
I
L
G
A
N
P
D
--
F
A
T
L
W
N
C
R
R
E
V
L
-
Q
H
L
E
T
E
K
S
P
E
E
S
A
A
L
V
K
A
--
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
46.97
17%
64
- C3 -
4OR2
-
C562_ECOLX (first)
A:
[5-105]
-----------------------------------------------------------------------------------------------------------
D
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
K
A
D
N
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
---
Q
K
A
T
P
P
-------
K
------
L
E
DKSPD
S
P
-
E
M
K
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
----
D
A
----
L
K
L
A
N
E
G
-----
K
V
K
E
A
Q
A
A
A
--
E
-
Q
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
46.94
3%
-55
- C3 -
3IQC
-
?
A:
[27-91]
-------------------------
L
Y
E
G
I
L
R
F
S
S
Q
A
K
R
----
C
I
E
N
E
D
I
E
K
K
I
Y
Y
I
N
R
V
T
D
I
F
T
E
L
L
N
I
L
D
--
Y
E--------
K
G
G
E
V
A
V
----------------
Y
L
T
G
L
Y
T
H
Q
I
K
V
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
46.30
14%
-218
- C3 -
4BWD
-
SCOC_HUMAN
A:
[86-146]
--------------------------------------------------------
V
D
A
E
N
Q
V
E
L
E
E
K
T
R
L
I
--
N
---------
Q
V
M
E
L
Q
H
----------------
T
L
E
D
L
S
A
R
V
D
A
--
V
K
----
E
E
N
L
K
L
K
S
E
N
Q
V
L
G
Q
Y
I
E
N
L
---
M
S
A
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
45.90
17%
38
- C3 -
4JKV
-
C562_ECOLX (first)
A:
[25-111]
-------------------------------------------------------------------------------------------------------------------------------
N
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
---
Q
K
A
T
P
P
-------
K
LEDKSP
D
S
-----
P
E
M
K
--
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
----
D
A
----
L
K
L
A
N
E
G
-----
K
V
K
E
A
Q
A
A
A
--
E
-
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
45.80
29%
22
- C3 -
3DST
-
PGTA_RAT
A:
[15-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
K
R
L
E
R
E
Q
K
L
K
L
Y
Q
S
A
T
----
Q
A
V
F
Q
K
R
-----
Q
A
G
E
L
D
E
S
V
--
L
-
E
L
T
S
------------
Q
I
L
G
A
N
P
D
--
F
A
T
L
W
N
C
R
R
E
V
L
-
Q
H
L
E
T
E
K
S
P
E
E
S
A
A
L
V
K
A
--
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
45.20
29%
36
- C3 -
3C72
-
PGTA_RAT
A:
[20-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
R
L
E
R
E
Q
K
L
K
L
Y
Q
S
A
T
----
Q
A
V
F
Q
K
R
-----
Q
A
G
E
L
D
E
S
V
--
L
-
E
L
T
S
------------
Q
I
L
G
A
N
P
D
--
F
A
T
L
W
N
C
R
R
E
V
L
-
Q
H
L
E
T
E
K
S
P
E
E
S
A
A
L
V
K
A
--
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
44.65
29%
43
- C3 -
3HXB
-
?
A:
[15-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
A
K
R
L
E
R
E
Q
K
L
K
L
Y
Q
S
A
T
----
Q
A
V
F
Q
K
R
-----
Q
A
G
E
L
D
E
S
V
--
L
-
E
L
T
S
------------
Q
I
L
G
A
N
P
D
--
F
A
T
L
W
N
C
R
R
E
V
L
-
Q
H
L
E
T
E
K
S
P
E
E
S
A
A
L
V
K
A
--
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
44.55
27%
-133
- C3 -
3FR8
3
ILV5_ORYSJ
A:
[241-299]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
S
D
I
F
G
E
R
G
I
L
L
G
A
V
H
G
I
V
E
A
L
F
R
R
Y
T
E
Q
G
M
D
E
E
M
A
Y
K
N
T
V
E
G
I
T
G
I
I
S
K
T
I
S
K
K
G
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
44.31
18%
50
- C3 -
4UXV
-
EZRA_BACSU
A:
[375-504]
-------------------------------------------------------------------------------------------------------------------
V
A
Y
S
L
L
V
----
E
E
V
A
S
I
E
K
Q
I
E
E
V
K
K
E
H
A
E
Y
---
R
E
N
L
Q
A
-------
L
------
R
K
-----
E
E
-
L
--
Q
A
R
E
T
L
S
N
L
K
K
T
I
S
----
E
T
----
A
R
L
L
K
T
S
-----
N
I
P
G
I
P
S
H
I
--
Q
-
E
M
L
E
------------
N
A
H
H
H
I
Q
E
--
T
---------
V
N
-
Q
L
N
E
L
P
L
N
M
E
E
A
G
A
H
L
K
Q
A
E
D
I
V
N
R
A
-----
S
R
E
S
E
E
L
V
E
Q
V
I
L
I
E
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
44.22
14%
74
- C3 -
3U8P
-
C562_ECOLX (first)
A:
[40-138]
---------------------------------------------------------------------------------------
G
G
S
A
----------------
D
L
E
D
N
M
E
T
L
N
D
N
L
K
V
I
E
K
A
D
N
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
---
Q
K
A
T
P
P
KLEDKSP
D
------
S
P
-----
E
M
-
K
--
D
F
R
H
G
F
D
I
L
V
G
Q
I
D
----
D
A
----
L
K
L
A
N
E
G
-----
K
V
K
E
A
Q
A
A
A
--
E
-
Q
L
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
44.22
27%
-127
- C3 -
3FR7
2
ILV5_ORYSJ
A:
[241-299]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
K
S
D
I
F
G
E
R
G
I
L
L
G
A
V
H
G
I
V
E
A
L
F
R
R
Y
T
E
Q
G
M
D
E
E
M
A
Y
K
N
T
V
E
G
I
T
G
I
I
S
K
T
I
S
K
K
G
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
43.72
29%
26
- C3 -
3DSU
-
?
A:
[18-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
L
E
R
E
Q
K
L
K
L
Y
Q
S
A
T
----
Q
A
V
F
Q
K
R
-----
Q
A
G
E
L
D
E
S
V
--
L
-
E
L
T
S
------------
Q
I
L
G
A
N
P
D
--
F
A
T
L
W
N
C
R
R
E
V
L
-
Q
H
L
E
T
E
K
S
P
E
E
S
A
A
L
V
K
A
--
E
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
43.58
11%
-84
- C3 -
2QIH
10
?
A:
[17-152]
------------------------------------------------------------------------------------------
N
----------------
T
D
R
I
A
T
A
E
L
G
I
A
E
N
K
----
K
D
A
Q
I
A
K
A
Q
A
N
E
N
K
D
G
I
A
K
N
---
Q
A
D
I
Q
L
-------
H
------
D
K
-----
K
I
-
T
--
N
L
G
I
L
H
S
M
V
A
R
A
V
G
----
N
N
----
T
Q
G
V
A
T
N
-----
K
A
D
I
A
K
N
Q
A
--
D
I
A
N
N
I
------------
K
N
I
Y
E
L
A
Q
--
Q
---------
Q
D
-
Q
H
S
S
D
I
K
T
L
A
K
V
S
A
A
N
T
D
--
R
I
A
K
N
K
-----
A
E
A
D
A
S
F
E
T
L
T
K
N
Q
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
43.41
13%
41
- C3 -
3DZA
10
?
A:
[36-179]
------------------------------
M
R
D
I
Q
F
A
R
L
----
A
L
F
H
G
Q
P
D
S
A
K
K
L
T
D
D
A
A
A
L
L
A
A
D
D
A
S
W
A
--
K
FVKTDAKAK
M
I
A
D
R
Y
V
II
N
A
S
I
A
L
S
E
DYVAT
P
E
K
E
S
A
I
Q
S
A
N
E
K
L
A
K
----
G
D
Q
K
G
A
I
D
T
L
R
L
A
G
I
G
V
I
E
N
------------------------------------
Q
Y
L
M
P
L
N
Q
T
R
K
A
V
A
----
Q
S
----
Q
E
L
L
K
A
G
-----
K
Y
Y
E
A
N
L
V
L
--
K
-
G
A
E
E
------------
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------