@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0178: (2016-04-20 )
MEDQQSASGDLTQKSVANGESTDTASAATEGHRGEIDAAGEPDERGAAVADSQADEDDSAATAARGGKTRARRSRGRRLAITVGVAAALFVGSAAFAGATVEPYLSERAVVATKLMVARTAANAITTLWTYTPENMDTLADRAANYLSGDFAAQYRRFVDQIAAANKQAKITNDTEVTGAAVESLSGRDAVAIVYTNTTTTSPVTKNIPALKYLSYRLFMKRYDARWLVTRMTTITSLDLTPQV
Atome Classification :
(20 SA)
----------------------------.........10.-.......20........30....---....---40........50----.....-...60........70------........80........90........100-....------...110.......120---.....-------------..------.130....--...140---------...---..-....150--.....-..-.-----------160--.--.-.-......------------170..-.....180--.------...---..--.190--..--.....200.-.-..--.---..210..-.....220------.......230--.......240..---------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------MEDQQSASGDL
T
-
Q
K
SVANGESTDTASAATEGHRGE---IDAA---GEPDERGAAVAD----SQADE-DDSA
A
T
AARGGK
T
R
A
------
R
R
SRG
R
R
L
A
I
T
V
G
V
A
A
A
L
F
VGSAAFAGATV
E
-
P
Y
L
S------E
R
A
V
V
A
T
K
L
M
V
A
R
TA----AN
A
I
T
-------------
T
L
------
W
TYTPE
N
M
--
D
T
L
A
-----------
D
R
A
---
A
N
-YLS
G
D
F
---
A
A
Q
Y
R
-
R
F
-
V
-----------
D
----
Q
--
I
-
A
-AANKQA------------KITND-TEV
T
G
A
A
V
--
E
------SLS---GR--
D
A
V
A
--
I
V
--
Y
TNTTTTSP-V-TK--N---I
P
A
L
K
Y
L
-
S
Y
R
L
F
M
K
R------YDA
R
W
L
V
T
R
M
--
T
T
I
T
SLDLTPQV---------------------------------------------
50
Fugue
74.94
14%
16
- C6 -
1QOY
-
HLYE_ECOLI
A:
[-4-298]
------------------------------
S
M
A
E
I
V
A
D
K
T
-
V
E
V
V
K
--
N
A
I
E
T
A
D
G
A
L
D
L
Y
N
K
Y
---
L
D
Q
V
IP
W
Q
T
F
D
E
T
I
K
E
L
S
R
----
F
K
Q
E
Y
-
S
Q
A
A
S
V
L
V
G
D
I
K
T
L
L
------
M
D
S
Q
D
K
Y
F
E
A
T
Q
T
V
Y
E
W
C
G
V
A
T
Q
L
L
A
A
Y
I
L
L
F
D
E
Y
N
------
E
K
K
A
S
A
Q
K
D
I
L
I
K
V
L
----
D
D
G
I
T
-------------
K
L
N
E
A
Q
K
S
L
L
V
S
S
Q
S
F
--
N
N
A
S
-----------
G
K
L
L
A
L
D
S
-
Q
L
T
N
D
F
---
S
E
K
S
S
-
Y
F
-
Q
-----------
S
----
Q
--
V
-
D
-
K
I
R
K
E
A
------------
Y
A
G
A
A
-
A
G
V
V
V
G
P
F
--
G
------
L
I
I
---
S
Y
--
S
I
A
A
--
G
V
--
V
E
G
K
L
I
P
E
L
-
K
-
N
K
--
L
---
K
S
V
Q
N
F
F
T
T
L
S
N
T
V
K
Q
------
A
N
K
D
I
D
A
A
K
L
--
K
L
T
T
E
I
A
A
I
G
E
I
K
T
E
T
E
T
TRFYVDYD
D
L
M
L
S
L
L
K
E
A
A
K
K
M
I
N
T
C
N
E
Y
Q
K
R
H
GKKTLF
47
Fugue
68.82
12%
-11
- C1 -
2V9P
3
VE1_BPV1
A:
[1-279]
---------------------------------
T
L
N
E
S
K
F
-
D
F
G
T
M
V
Q
W
A
Y
D
H
K
Y
A
E
E
S
K
I
A
Y
E
---
Y
A
L
A
---
A
G
S
D
S
N
A
R
A
F
L
A
----
T
N
S
Q
A
-
K
H
V
K
D
C
A
T
M
V
R
H
Y
L
R
------
A
E
T
Q
A
L
S
M
P
A
Y
I
K
A
R
C
K
L
A
T
G
E
G
S
W
--
K
S
I
L
-
T
F
F
N
Y
Q
NIE
L
I
T
F
I
N
A
L
K
L
W
L
K
G
I
P
----
K
K
N
C
L
-------------
A
F
------
I
G
P
P
N
T
G
K
--
S
M
L
C
-----------
N
S
L
---
I
H
-
F
L
G
G
S
V
L
S
F
A
N
H
K
S
-
H
F
-
W
-----------
L
----
A
--
S
-
L
-
A
D
T
R
A
A
------------
L
V
D
D
A
-
T
H
A
C
W
R
Y
F
--
D
------
T
-
Y
---
L
R
--
N
A
L
D
G
Y
P
V
--
S
I
D
R
K
H
K
A
A
-
V
-
Q
I
--
K
---
A
P
P
L
L
V
T
-
S
N
I
D
V
Q
A
E
------
D
R
Y
L
Y
L
H
S
R
V
--
Q
T
F
R
F
E
Q
P
C
T
D
E
Q
P
F
N
I
T
D
A
D
W
K
S
F
F
V
R
L
W
GRLDLID--------------------
45
Fugue
65.43
11%
-51
- C7 -
1HKX
5
KCC2A_MOUSE
A:
[4-143]
-------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
I
E
D
E
D
T
-
K
V
R
K
------
Q
E
I
I
K
V
T
E
Q
L
I
E
A
I
S
----
N
G
D
F
E
-------------
S
Y
------
T
K
M
C
D
P
G
M
--
T
A
F
E
-----------
P
E
A
---
L
G
-
N
L
V
E
G
L
---
D
F
H
R
F
-
Y
F
-
E
-----------
N
----
L
--
W
-
S
-
R
N
S
K
P
----------------
V
H
-
T
T
I
L
N
P
H
I
--
H
------
L
M
----
G
D
--
E
S
A
C
--
I
A
--
Y
I
R
I
T
Q
Y
L
D
---
A
G
--
G
---
I
P
R
T
A
Q
S
-
E
E
T
R
V
W
H
R
------
R
D
G
K
W
Q
I
V
H
F
--
H
R
S
G
A
P
S
--------------------------------------------------
14
PsiBlast_PDB
64.49
22%
-13
- C4 -
1E6Y
-
MCRB_METBF
B:
[90-213]
-------------------------------------------------------------------------------------------
Q
V
D
E
G
D
D
T
N
V
I
K
V
K
G
G
K
S
L
L
------
I
Q
S
P
K
S
R
I
I
A
G
A
D
F
M
S
A
T
T
V
G
A
A
A
V
T
Q
T
I
M
D
-
M
F
G
T
------
D
----------
P
Y
D
A
----
P
I
V
K
S
-------------
A
V
------
W
G
S
Y
P
Q
T
M
--
D
L
M
G
-----------
G
Q
V
---
Q
G
-
I
L
S
I
P
Q
---
N
N
E
G
L
-
G
F
-
S
-----------
L
----
R
--
N
-
I
-
M
A
N
H
V
A
------------
A
I
S
N
R
-
N
A
M
N
A
S
A
L
--
S
------
S
I
---------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
64.29
12%
-60
- C7 -
5D9R
-
ARC6_ARATH
A:
[679-799]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
E
N
I
V
S
-------------
K
W
------
Q
K
I
K
S
L
A
F
GP
D
H
R
I
-----------
E
M
L
---
P
E
-
V
L
D
G
R
M
---
L
K
I
W
T
-
D
R
-
A
-----------
A
----
E
--
T
-
A
-
Q
L
G
L
V
Y
------------
D
Y
T
L
L
K
L
S
V
D
S
V
T
V
--
S
------
A
-
D
---
G
T
--
R
A
L
V
--
E
A
--
T
L
E
E
S
A
C
L
S
D
L
-
V
H
--
P
EN
N
A
T
D
V
R
T
Y
-
T
T
R
Y
E
V
F
W
------
S
K
S
G
W
K
I
T
E
G
--
S
V
L
------------------------------------------------------
15
PsiBlast_PDB
62.19
23%
-22
- C3 -
4NS4
-
?
A:
[79-257]
-------------------------------------------------------------------------------------------------
D
S
S
K
P
M
A
A
D
Y
H
S
E
A
------
Q
A
T
R
L
H
E
L
L
Q
A
K
G
L
A
S
S
I
H
V
G
G
N
S
M
G
G
A
I
S
V
-
A
Y
A
A
------
K
Y
P
K
E
V
K
S
L
W
L
I
D
S
A
GFWS------------------------------------
P
L
L
V
-----------
D
K
K
---
E
D
F
Y
A
M
Y
D
F
---
V
M
S
K
P
-
P
Y
-
I
-----------
P
----
K
S
-
V
-
K
-
A
V
F
A
Q
E
------------
R
I
A
N
------------
K
------
A
L
E
---
S
K
--
I
L
A
Q
--
I
V
--
E
D
N
V
E
Q
R
A
K
-
V
-
I
T
E
Y
N
---
I
P
T
L
---------------------------------------------------------------------------------------
21
HHSearch
62.02
16%
-43
- C7 -
5CNL
7
?
A:
[5-117]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
Q
L
A
V
W
A
----
N
E
A
I
I
-------------
A
T
------
Y
T
F
D
Y
K
N
Y
--
M
Q
Q
Q
-----------
K
E
I
---
A
K
-
Y
F
S
A
D
G
---
W
I
A
Y
S
-
K
A
-
L
-----------
N
----
Q
S
K
L
-
P
-
E
V
V
Q
K
N
------------
A
Y
F
V
N
-
A
V
A
T
E
P
P
K
--
L
------
I
T
L
---
D
P
T-
H
W
Q
A
--
I
M
--
P
I
L
V
V
Y
K
N
P
-
Q
---------
Y
E
Q
K
Q
N
L
-
K
V
V
L
G
F
T
V
------
A
S
P
G
-----------------------------------------------------------------
2
PsiBlast_PDB
59.38
27%
-9
- C4 -
1G87
1
GUNG_CLOCE
A:
[403-500]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
N
A
--
D
G
Y
T
-----------
D
E
I
---
N
N
-
Y
V
N
N
E
I
---
A
C
D
Y
N
A
G
F
-
T
-----------
G
----
A
--
L
-
A
-
K
M
Y
K
H
S
G
G
D
P
IPNFKAIE
K
I
T
N
D
-
E
V
I
I
K
A
G
L
--
N
------
S
T
G
---
P
N
Y
T
E
I
K
A
--
V
V
--
Y
N
Q
T
G
W
P
A
R
-
V
-
T
D
--
K
---
I
-------
S
F
K
Y
F
M
-----------------------------------------------------------------------------
1
PsiBlast_PDB
58.81
27%
-12
- C4 -
1GA2
4
GUNG_CLOCE
A:
[403-499]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
N
A
--
D
G
Y
T
-----------
D
E
I
---
N
N
-
Y
V
N
N
E
I
---
A
C
D
Y
N
A
G
F
-
T
-----------
G
----
A
--
L
-
A
-
K
M
Y
K
H
S
G
G
D
P
IPNFKAIE
K
I
T
N
D
-
E
V
I
I
K
A
G
L
--
N
------
S
T
G
---
P
N
Y
T
E
I
K
A
--
V
V
--
Y
N
Q
T
G
W
P
A
R
-
V
-
T
D
--
K
---
I
-------
S
F
K
Y
F
M
-----------------------------------------------------------------------------
25
HHSearch
58.24
17%
-39
- C7 -
4HZ9
-
?
B:
[55-148]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
-----------
P
D
I
---
E
R
-
Y
V
A
T
D
T
---
V
G
R
L
R
-
N
D
-
Y
-----------
A
H
AGP
P
--
N
G
V
-
D
Y
F
L
K
V
------------
Q
D
Y
D
S
R
D
W
L
A
H
I
Q
V
Q
R
A
------
L
M
L
---
G
D
--
V
A
V
V
--
P
V
--
S
F
G
----
S
Q
---------------
D
P
V
-
H
V
L
V
F
L
K
R
------
V
D
A
T
W
K
I
I
K
I
--
D
D
T
W
-----------------------------------------------------
3
PsiBlast_PDB
57.94
27%
-9
- C4 -
1KFG
2
GUNG_CLOCE
A:
[403-499]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
N
A
--
D
G
Y
T
-----------
D
E
I
---
N
N
-
Y
V
N
N
E
I
---
A
C
D
Y
N
A
G
F
-
T
-----------
G
----
A
--
L
-
A
-
K
M
Y
K
H
S
G
G
D
P
IPNFKAIE
K
I
T
N
D
-
E
V
I
I
K
A
G
L
--
N
------
S
T
G
---
P
N
Y
T
E
I
K
A
--
V
V
--
Y
N
Q
T
G
W
P
A
R
-
V
-
T
D
--
K
---
I
-------
S
F
K
Y
F
M
-----------------------------------------------------------------------------
43
Fugue
57.77
15%
-9
* C6 *
4OR2
9
C562_ECOLX (first)
A:
[5-372]
D
L
E
D
N
W
E
T
L
N
D
N
L
K
V
I
E
K
ADN
A
A
Q
V
K
D
A
L
T
K
M
R
A
A
A
L
D
A
Q
-
K
A
T
P
P
K
L
E
D
K
S
P
D
S
P
E
M
K
D
F
R
H
G
---
F
D
I
L
---
V
G
Q
I
D
D
A
L
K
L
A
N
E
GK
V
K
E
A
Q
A
-
A
A
E
Q
L
K
T
T
R
N
A
Y
I
Q
K
Y
L
I
P
V
R
Y
L
E
W
S
N
I
E
S
I
I
A
I
A
F
S
C
L
G
I
L
V
T
L
F
V
T
L
I
F
V
-
L
Y
R
D
------
T
P
V
V
K
S
S
S
R
E
L
C
Y
I
I
----
L
A
G
I
F
L
G
Y
V
C
P
F
T
L
I
AKP
T
T
------
T
S
C
Y
L
Q
R
L
--
L
V
G
L
-----------
S
S
A
---
M
C
-
Y
S
A
L
V
T
---
K
T
N
R
I
-
A
R
-
I
LARKPRFMS
A
W
A
----
Q
--
V
-
I
-
I
A
S
I
L
I
------------
S
V
Q
L
T
-
L
V
V
T
L
I
I
M
--
E
P
P
M
P
I
L
S
Y
P
---
S
I
--
K
E
V
Y
--
L
I
C
N
T
S
N
L
G
V
V
A
P
-
L
-
G
Y
--
N
---
G
L
L
I
M
S
C
-
T
Y
Y
A
F
K
T
R
NVPANF
N
E
A
K
Y
I
A
F
T
M
Y
T
T
C
I
I
W
L
A
F
V
P
I
Y
F
G
S
NY
K
I
I
T
T
C
F
A
V
S
L
S
V
T
V
A
L
G
CMF
T
P
K
M
Y
I
I
IAKPE-------
16
PsiBlast_PDB
56.90
23%
6
* C5 *
4FGU
1
LGMN_HUMAN
A:
[170-294]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
F
Y
I
E
----
A
C
E
S
G
-------------
S
M
------
M
N
H
L
P
D
N
I
--
N
V
Y
A
-----------
T
T
A
---
A
N
-
P
R
E
S
S
Y
---
A
C
Y
Y
D
-
E
K
-
R
-----------
S
----
T
--
Y
-
L
-
G
D
W
Y
S
V
------------
N
W
M
E
D
-
S
D
V
E
D
L
T
K
--
E
------
T
L
H
---
K
Q
--
Y
H
L
V
--
K
S
--
H
T
N
T
S
H
V
M
Q
-
Y
G
Q
K
--
T
---
I
S
T
M
K
V
M
-
Q
F
Q
-
G
M
K
R
------
K
A
S
S
--
P
V
P
L
--
P
P
V
T
H
L
D
L
T
P
-----------------------------------------------
27
HHSearch
56.73
14%
-55
- C7 -
3KZT
4
?
A:
[55-142]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
K
---
Q
K
-
F
L
T
K
E
L
---
I
E
K
V
D
-
R
L
-
I
-----------
E
----
A
--
T
-
D
A
D
P
I
I
R
A
------------
Q
D
L
G
E
-
N
D
M
K
T
L
S
V
--
K
------
H
L
N
---
D
N
----
W
Y
--
E
V
--
N
Y
----
T
S
A
-
K
-
G
-------
S
Q
Y
E
R
A
V
-
S
I
P
V
R
V
V
N
------
V
D
G
Q
Y
L
I
D
D
I
--
T
P
E
------------------------------------------------------
22
HHSearch
56.35
15%
-42
- C7 -
3WZ4
4
?
A:
[7-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
A
V
L
Q
W
A
----
N
Q
A
A
I
-------------
A
A
------
F
T
Y
N
F
V
N
Y
--
R
D
E
L
-----------
Q
A
S
---
S
G
-
F
F
T
A
E
G
---
W
D
Q
F
L
-
G
A
-
L
-----------
E
----
Q
S
N
N
-
L
-
D
A
V
K
A
K
------------
K
L
V
V
S
-
A
V
A
T
R
A
P
I
--
I
------
L
Q
K
GVL
N
G
R
Y
S
W
R
V
--
Q
M
--
P
I
L
V
T
Y
Q
S
A
-
S
---------
E
F
T
Q
Q
N
N
-
V
V
T
M
L
I
T
R
------
V
S
-------------------------------------------------------------------
4
PsiBlast_PDB
55.65
27%
42
- C4 -
1K72
2
GUNG_CLOCE
A:
[405-499]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
N
A
--
D
G
Y
T
-----------
D
E
I
---
N
N
-
Y
V
N
N
E
I
---
A
C
D
Y
N
A
G
F
-
T
-----------
G
----
A
--
L
-
A
-
K
M
Y
K
H
S
G
G
D
P
IPNFKAIE
K
I
T
N
D
-
E
V
I
I
K
A
G
L
--
N
------
S
T
G
---
P
N
Y
T
E
I
K
A
--
V
V
--
Y
N
Q
T
G
W
P
A
R
-
V
-
T
D
--
K
---
I
-------
S
F
K
Y
F
M
-----------------------------------------------------------------------------
6
PsiBlast_PDB
54.01
24%
-26
- C4 -
2FH7
-
PTPRS_HUMAN
A:
[1732-1828]
-----------------------------------------------------------------------------------------------------------------------------------------
G
S
D
Y
I
N
A
S
F
I
D
-
G
Y
R
Q
------
Q
K
A
Y
I
A
T
Q
G
P
L
A
E
T
T
----
E
D
F
W
R
-------------
M
L
------
W
----
E
N
N
--
S
T
I
V
V
M
LTKLREMGR
E
K
C
---
H
Q
-
Y
W
P
A
E
R
---
S
A
R
Y
Q
-
Y
F
V
V
-----------
D
----
P
--
M
-
A
-
E
Y
N
M
P
Q
------------
Y
I
L
R
E
-
F
K
V
T
D
A
----------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
53.66
17%
66
- C5 -
2LYI
-
?
A:
[-6-160]
----------------------------------
H
S
G
S
L
G
-
D
Q
L
T
S
T
L
A
S
A
L
T
K
T
N
T
L
K
A
V
S
A
S
KPS
A
N
V
A
---
V
A
I
V
T
S
G
L
K
K
A
L
----
G
A
L
R
I
-
N
A
G
V
S
S
Q
L
T
S
A
V
S
Q
A
------
V
A
N
V
R
--------------------
P
G
S
S
P
A
-
V
Y
A
K
------
A
I
A
A
P
S
V
Q
I
L
V
S
S
G
S
----
V
N
----------------------------
N
N
N
A
--
K
Q
V
A
-----------
S
T
L
---
S
E
-
N
L
V
R
E
M
---
A
N
T
A
R
-
R
Y
-
R
-----------
V
----
N
--
V
-
P
-
E
A
S
V
Q
A
------------
D
V
S
L
V
-
T
S
M
T
S
T
F
V
--------------------------------------------------------------------------------
I
--
S
S
Q
T
S
V
Q
M
G
G
-----------------------------------------------
10
PsiBlast_PDB
53.09
34%
100
- C4 -
2FMM
-
EMSY_HUMAN
E:
[31-90]
----------------------------------
A
Q
G
D
L
T
K
E
K
K
D
L
L
G
E
L
S
K
V
L
S
I
S
T
E
R
H
R
A
E
---
V
R
R
A
---
V
N
-
D
E
R
L
T
T
I
A
H
----
N
M
S
G
P
-
N
S
S
S
E
W
S
I
E
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
52.60
24%
-28
- C4 -
4BPC
-
PTPRS_HUMAN
A:
[1732-1828]
-----------------------------------------------------------------------------------------------------------------------------------------
G
S
D
Y
I
N
A
S
F
I
D
-
G
Y
R
Q
------
Q
K
A
Y
I
A
T
Q
G
P
L
A
E
T
T
----
E
D
F
W
R
-------------
M
L
------
W
----
E
N
N
--
S
T
I
V
V
M
LTKLREMGR
E
K
C
---
H
Q
-
Y
W
P
A
E
R
---
S
A
R
Y
Q
-
Y
F
V
V
-----------
D
----
P
--
M
-
A
-
E
Y
N
M
P
Q
------------
Y
I
L
R
E
-
F
K
V
T
D
A
----------------------------------------------------------------------------------------------------------------------------------------------