@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0200: (2016-04-20 )
MRNAWRLVVFDVLAPLATIAALAAIGVLLGWPLWWVSTCSVLVLLVVEGVAINFWLLRRDSVTVGTDDDAPGLRLAVVFLCAAAISAAVVTGYLRWTTPDRDFNRDSREVVHLATGMAETVASFSPSAPAAAVDRAAAMMVPEHAGGFKEQYAKSSADLARRGVTAQAATLAAGVEAIGPSAASVAVILRVSQSIPGQPTSQAARALRVTLTKRGSGWLVLDVTPINAR
Atome Classification :
(20 SA)
------------------------------------------.........10........-----------20....-------....30..--......40....--....----50.....---...----60.......-.70--..--------.......80........90......---..100.....-..110....-------------...120.....--..--------------130.......140--.....----...150..--...----..------160----.----..-.-----..--.170.......-----180-.--.-------.......190--...--.---------------.----..200----.--..-.....210.--......220.......-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------MRN
A
W
R
L
V
V
F
D
V
L
A
P
L
A
T
I
-----------
A
A
L
A
A
I
-------
G
V
L
LGW
P
L
--
W
W
V
S
T
C
S
V
L
V
L
L
--
V
VEG----
V
A
I
N
F
W
L
---
L
R
R----D
S
V
T
VGTDD-DA---P
G
--------
L
R
L
A
V
V
F
L
C
A
A
A
I
S
A
A
V
V
T
G
Y
L
R
WT---TPDRDFNR
D
S
-
R
E
V
V
H
L
AT
G
-------------
M
A
E
T
V
A
SFSPS--A
P
--------------
A
A
A
V
D
R
A
A
A
MMV---PEHAG----
G
F
K
E
Q
Y
A
K
--
S
S
A
----
D
L
------
A
RR----G----V
T
-
A
-----
Q
A
--
A
T
L
A
A
G
V
E
AIG-----P---S--
A
-------
A
S
V
A
V
I
L
R
VS--QSI--P---------------G----Q
P
T
S
-----
Q
--
A
A
-
R
A
L
R
V
T
L
TK--RGS
G
W
L
V
L
DVTPINAR-------------------
48
Fugue
80.99
24%
-102
- C1 -
4KXR
-
ESPG5_MYCTU
C:
[8-298]
------------------------------------T
D
I
T
V
N
V
D
G
F
W
M
L
Q
A
L
L
D
I
R
H
V
A
P
E
LR
C
R
P
Y
VH
P
G
M
A
V
M
R
E
Q
-------
G
I
V
V
N
D
A
V
N
E
Q
V
A
A
R
M
K
V
L
A
A
P
--
D
L
E
V
----
V
A
----
L
---
L
S
R
----
G
K
L
L
Y
G
V
I
D
-
D
E
NQP
P
G
SRDIPDN
E
F
R
V
V
L
A
R
R
G
Q
H
W
V
S
A
V
R
V
G
N
D
I
T
V
D
---
D
V
T
V
S
---
D
S
-
A
S
I
A
A
L
V
M
D
-------------
G
L
E
S
I
H
H
A
D
P
A
--
A
I
--------------
N
A
V
N
V
P
M
E
E
M
L
E
---
A
T
K
S
W
----
Q
E
S
G
F
N
V
F
--
S
G
G
----
D
L
------
R
R
M
----
G
----
I
S
--------
A
--
A
T
V
A
A
L
G
Q
A
L
S
-----
D
---
P
--
A
-------
A
E
V
A
V
Y
A
R
Q
Y
--
R
D
D
--
A
---------------
K
----
G
P
S
A
S
V
L
S
L
K
--
D
G
-
S
G
G
R
I
A
L
Y
Q
Q
A
R
E
A
W
L
A
I
C
P
A
T
P
Q
L
V
Q
V
G
V
K
T
V
L
D
T
LPYGEWKTHS
47
Fugue
66.37
17%
-60
* C4 *
4E1S
14
EAE_ECO57
A:
[1-242]
-------------------------------Q
H
Y
G
T
A
E
V
N
L
Q
S
G
N
N
F
D
G
S
S
L
D
F
L
L
P
F
Y
D
S
-----------
E
K
M
L
A
F
-------
G
Q
V
G
A
R
Y
I
--
D
S
-------
R
F
T
--
A
N
L
G
----
A
G
Q
R
F
F
L
PA
N
M
L
G
----
Y
N
V
F
I
D
Q
D
F
-
S
G
---
D
N
--------
T
R
L
G
I
G
G
E
Y
W
R
D
Y
F
K
S
S
V
N
G
Y
F
R
M
S
---
G
W
H
E
S
Y
N
K
K
D
-
Y
D
E
R
P
-
A
N
G
-------------
F
D
I
R
F
N
G
Y
L
P
S
--
Y
P
--------------
A
L
G
A
K
L
I
Y
E
Q
Y
Y
---
G
D
N
V
A
----
L
F
N
S
D
K
L
Q
--
S
N
P
----
G
A
------
A
T
V
----
G
----
V
N
-
Y
-----
T
P
--
I
P
L
V
T
M
G
I
D
Y
R
-----
H
---
G
--
T
GN
E
N
D
L
L
Y
S
M
Q
F
R
Y
Q
F
D
--
K
S
W
--
S
---------------
Q
----
Q
I
E
P
-----
Q
--
Y
V
-
N
E
L
R
-
T
L
S
G
--
S
R
Y
D
L
V
Q
R
N
N
N
I
I
L
E
Y
K------------------
21
HHSearch
63.47
15%
-89
- C3 -
5D9R
-
ARC6_ARATH
A:
[677-799]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
A
E
N
-------------
I
V
S
K
W
Q
K
I
K
S
L
A
F
G
P
--------------
D
H
R
I
E
M
L
P
E
V
L
D
---
G
R
--------
M
L
K
I
W
T
D
--
R
A
A
----
E
T
------
A
Q
L
----
G
L
V
Y
D
Y
T
L
L
-----
K
L
--
S
V
D
S
V
T
V
S
A
-
D
-----
G
---
T
--
R
-------
A
L
V
E
A
T
L
E
E
S
--
A
C
L
S
D
L
---------------
V
HPEN
N
A
T
D
-----
V
--
R
T
-
Y
T
T
R
Y
E
V
F
W
--
S
K
S
G
W
K
I
T
E
G
S
V
L
----------------------
50
Fugue
62.97
11%
-100
- C4 -
4EGD
2
Y2783_STAA8
A:
[27-253]
------------------------------------------
G
R
N
A
Q
I
K
D
T
F
N
Q
T
L
K
L
Y
P
T
-----------
K
N
L
D
D
F
-------
Y
D
K
E
G
F
R
D
--
Q
E
F
K
K
G
D
K
G
T
W
I
--
V
N
S
E
----
M
V
I
E
---------------------
P
-
K
G
---
K
D
--------
M
E
T
R
G
M
V
L
Y
I
N
R
N
T
R
T
T
K
G
Y
Y
F
I
S
E
---
M
T
P
K
D
--
D
E
K
-
R
Y
P
V
K
M
E
H
N
-------------
K
I
I
P
T
K
P
L
P
N
D
--
K
L
--------------
K
K
E
I
E
N
F
K
F
F
V
Q
Y
G
N
F
K
D
I
N
----
D
Y
K
D
G
D
I
S
--
Y
N
P
----
N
V
------
P
S
Y
----
S
----
A
K
-
Y
-----
Q
L
--
N
N
D
D
Y
N
V
Q
Q
L
R
K
R
Y
DI
P
---
T
--
K
-------
Q
A
P
K
L
L
L
K
G
D
--
G
D
L
--
K
---------------
G
------
S
S
-----
V
--
G
S
-
R
S
L
E
F
T
F
V
E
--
N
K
E
E
N
I
Y
F
T
D
S
V
Q
Y
T
P
S
E-----------------
49
Fugue
62.64
20%
-85
- C2 -
4V12
2
?
A:
[7-343]
DTSTLESRVG
H
Y
Y
Q
M
E
D
T
Y
L
V
G
R
E
K
V
R
E
F
A
R
A
V
QDYHPAHWN
L
A
T
A
A
D
L
G
H
P
G
L
I
A
P
L
T
F
T
-----------
S
A
P
A
M
A
C
N
Q
RMFE
S
V
V
V
G
Y
D
---
M
Y
L
Q
T
E
E
V
F
E
Q
H
RP
I
V
E
G
D
E
L
S
I
D
I
E
L
T
S
---
V
R
R
I
AGR
D
L
I
T
V
T
N
T
F
T
D
T
---
A
G
--------
E
V
V
H
T
L
H
T
T
V
V
G
I
T
A
E
D
V
D
P
A
I
R
P
A
---
V
Q
G
V
M
M
H
G
I
N
-
M
L
G
V
E
E
T
N
A
P
Y
E
K
T
V
R
P
EGELR
I
A
Q
G
G
A
T
R
T
P
T
--
S
L
NFDDLKVGEELP
V
H
T
A
R
L
S
R
G
D
L
V
N
Y
---
A
G
V
A
G
------
D
A
N
P
L
H
--
W
D
E
----
N
I
------
A
K
L
A
GQP
D
----
V
I
-
A
H----
G
M
--
L
T
M
G
L
G
A
G
F
V
S
-----
S
---
W
--
S
-------
G
D
P
G
A
I
T
R
Y
A
--
V
R
L
--
S
Q
P
A
V
V
P
AE
G
T
E
I
E
Y
S
G
----
R
I
K
S
-----
L
DP
E
T
-
R
T
G
V
V
I
V
A
A
--
K
S
G
G
R
K
I
F
G
L
A
T
A
T
I
R
F
S-----------------
41
Fugue
62.13
15%
-54
- C3 -
1HKX
5
KCC2A_MOUSE
A:
[4-143]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
T
---
I
E
D
E
D
T
K
V
R
K
-
Q
E
I
I
K
V
T
E
Q
-------------
L
I
E
A
I
S
N
G
D
F
E
--
S
Y
--------------
T
K
M
C
D
P
G
M
T
A
F
E
---
P
E
A
L
G
N
L
V
E
G
L
D
F
H
R
F
Y
--
F
E
N
----
L
W
------
S
R
N
----
S
----
K
P
-
V
-----
H
T
--
T
I
L
N
P
H
I
H
L
M
G
-----
D
---
E
--
S
-------
A
C
I
A
Y
I
R
I
T
Q
--
Y
L
D
--
A
---------------
G
----
G
I
P
R
-----
T
--
A
Q
-
S
E
E
T
R
V
W
H
R
--
R
D
G
K
W
Q
I
V
H
F
H
R
S
G
A
P
S------------------
2
PsiBlast_PDB
51.34
29%
-65
- C5 -
1U0R
-
NADK_MYCTU
A:
[191-292]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
S
T
P
-------------
T
G
S
T
A
Y
A
F
S
A
G
--
G
P
--------------
V
L
W
P
D
L
E
A
I
L
V
V
---
P
N
N
A
----------------
H
A
----
L
F
------
G
R
P
----
M
----
V
T
-
S
-----
P
E
--
A
T
I
A
I
E
I
E
A
D
G
-----
H
---
D
--
A
-------
L
-
V
F
C
D
G
R
R
E
--
M
L
I
--
P
--------------------------------
A
G
-
S
R
L
E
V
T
R
C
V
--
T
S
V
K
W
A
R
L
D
S
A
P
F
T
D
R
-------------------
3
PsiBlast_PDB
51.15
29%
-65
- C5 -
1U0T
-
NADK_MYCTU
A:
[191-292]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
S
T
P
-------------
T
G
S
T
A
Y
A
F
S
A
G
--
G
P
--------------
V
L
W
P
D
L
E
A
I
L
V
V
---
P
N
N
A
----------------
H
A
----
L
F
------
G
R
P
----
M
----
V
T
-
S
-----
P
E
--
A
T
I
A
I
E
I
E
A
D
G
-----
H
---
D
--
A
-------
L
-
V
F
C
D
G
R
R
E
--
M
L
I
--
P
--------------------------------
A
G
-
S
R
L
E
V
T
R
C
V
--
T
S
V
K
W
A
R
L
D
S
A
P
F
T
D
R
-------------------
5
PsiBlast_PDB
49.99
29%
-62
- C5 -
1Y3H
-
NADK_MYCTU
A:
[191-292]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
S
T
P
-------------
T
G
S
T
A
Y
A
F
S
A
G
--
G
P
--------------
V
L
W
P
D
L
E
A
I
L
V
V
---
P
N
N
A
----------------
H
A
----
L
F
------
G
R
P
----
M
----
V
T
-
S
-----
P
E
--
A
T
I
A
I
E
I
E
A
D
G
-----
H
---
D
--
A
-------
L
-
V
F
C
D
G
R
R
E
--
M
L
I
--
P
--------------------------------
A
G
-
S
R
L
E
V
T
R
C
V
--
T
S
V
K
W
A
R
L
D
S
A
P
F
T
D
R
-------------------
4
PsiBlast_PDB
49.27
29%
-50
- C5 -
1Y3I
3
NADK_MYCTU
A:
[191-292]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
S
T
P
-------------
T
G
S
T
A
Y
A
F
S
A
G
--
G
P
--------------
V
L
W
P
D
L
E
A
I
L
V
V
---
P
N
N
A
----------------
H
A
----
L
F
------
G
R
P
----
M
----
V
T
-
S
-----
P
E
--
A
T
I
A
I
E
I
E
A
D
G
-----
H
---
D
--
A
-------
L
-
V
F
C
D
G
R
R
E
--
M
L
I
--
P
--------------------------------
A
G
-
S
R
L
E
V
T
R
C
V
--
T
S
V
K
W
A
R
L
D
S
A
P
F
T
D
R
-------------------
25
HHSearch
45.08
10%
-48
- C3 -
3WZ4
4
?
A:
[6-121]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
-
S
A
V
L
Q
W
A
N
Q
-------------
A
A
I
A
A
F
T
Y
N
F
V
--
N
Y
--------------
R
D
E
L
Q
A
S
S
G
F
F
T
---
A
E
G
W
D
----
Q
F
L
G
A
L
E
Q
S
N
N
L
D
----
A
V
------
K
A
K
----
K
----
L
V
-
V
-----
S
A
--
V
A
T
R
A
P
I
I
L
Q
K
-----
G
VLN
G
R
Y
S
-------
W
R
V
Q
M
P
I
L
V
T
--
Y
Q
S
--
A
---------------
S
-----
E
F
T
-----
Q
--
Q
N
-
N
V
V
T
M
L
I
T
R
--
V
S
---------------------------------
22
HHSearch
44.74
10%
-67
* C3 *
4HZ9
-
?
B:
[55-148]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
P
D
I
E
R
Y
V
A
---
T
D
--------
T
V
G
R
L
R
N
--
D
Y
A
H
AGP
P
N
GVDYFL
K
V
Q
----
D
----
Y
D
-
S
-----
R
D
W
L
A
H
I
Q
V
Q
R
A
L
M
L
-----
G
---
D
--
V
-------
A
V
V
P
V
S
F
G
S
------------------------
Q
----------------
D
P
-
V
H
V
L
V
F
L
K
R
--
V
D
A
T
W
K
I
I
K
I
D
D
T
W
---------------------
43
Fugue
44.52
21%
-17
* C6 *
4MT5
-
?
A:
[0-183]
------------------------------------------
M
Q
T
A
Y
V
K
Y
V
D
D
---------------------------------------------
T
T
G
E
---------------------
T
---
L
R
Q
----
D
D
L
H
G
Y
T
D
E
-
T
I
---
P
---------------
Y
S
T
A
E
G
I
K
K
Y
E
G
D
G
Y
V
L
V
S
DGF
K
P
G
T
K
F
G
V
G
T
P
T
Y
E
V
H
F
K
H
G
-------------
M
T
H
T
----
D
A
T
--
D
K
--------------
N
A
E
Q
K
T
V
T
E
T
I
H
---
Y
V
D
E
N
----
N
Q
T
V
Q
P
D
S
--
T
T
A
----
V
T
------
F
K
R
----
G
----
Y
T
-
T
D
NVTG
K
V
--
V
S
Y
D
P
W
T
V
D
-
G
-----
N
---
Q
--
A
-------
D
S
K
T
F
A
A
V
P
S
--
P
A
V
--
E
---------------
G
----
Y
T
P
N
-----
H
--
Q
Q
I
N
E
F
T
V
T
P
D
S
--
K
D
I
V
K
T
V
V
Y
V
G
D
P
----------------------
32
HHSearch
42.80
28%
-59
- C3 -
3K7C
2
?
A:
[77-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
-----
K
---
D
--
S
-------
A
K
I
R
V
L
V
L
----
F
N
-------------------
N
----
D
N
-----------
N
-
Q
S
S
N
V
F
L
A
K
--
K
D
R
K
W
L
V
L
---------------------------
34
HHSearch
41.44
17%
-46
- C3 -
4GB5
3
?
A:
[86-139]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
-----
S
---
D
--
R
-------
A
T
I
H
A
H
V
R
A
E
--
H
W
L
--
P
AEVAGD---------
G
----
P
D
R
W
-----
L
--
V
V
-
G
F
Y
D
N
E
A
V
R
--
T
A
D
G
W
R
L
S
S
V
K
L
-----------------------
28
HHSearch
40.33
20%
-41
- C3 -
3GZR
4
?
A:
[75-126]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
T
I
A
-----
P
---
G
--
S
-------
A
L
A
V
V
T
L
I
Q
D
A
Y
V
T
P
--
D
---------------
G
----
R
Q
M
P
-----
R
--
A
H
-
D
R
L
T
L
L
A
V
E
--
R
E
G
V
W
R
F
I
H
G
H
------------------------
19
PsiBlast_PDB
34.93
50%
108
- C5 -
3M0H
-
?
A:
[19-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
A
L
K
E
D
Y
E
A
--
L
G
A
----
N
L
------
A
R
R
----
G
----
V
D
-
I
-----
E
A
--
V
T
--------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
34.72
7%
-24
- C3 -
5CNL
7
?
A:
[4-116]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
-
A
Q
L
A
V
W
A
N
E
-------------
A
I
I
A
T
Y
T
F
D
Y
K
--
N
Y
--------------
M
Q
Q
Q
K
E
I
A
K
Y
F
S
---
A
D
G
W
I
----
A
Y
S
K
A
L
N
Q
S
K
L
P
E
----
V
V
------
Q
K
N
----
A
----
Y
F
-
V
-----
N
A
--
V
A
T
E
P
P
K
L
I
T
L
-----
D
P--
T
--
H
-------
W
Q
A
I
M
P
I
L
V
V
--
Y
K
N
--
P
---------------
Q
----
Y
-
E
Q
-----
K
--
Q
N
-
L
K
V
V
L
G
F
T
V
--
A
S
P
--------------------------------
16
PsiBlast_PDB
34.03
50%
115
- C5 -
3ITO
-
?
A:
[19-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
A
L
K
E
D
Y
E
A
--
L
G
A
----
N
L
------
A
R
R
----
G
----
V
D
-
I
-----
E
A
--
V
T
--------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
33.62
50%
108
- C5 -
3ITL
-
?
A:
[19-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
----
A
L
K
E
D
Y
E
A
--
L
G
A
----
N
L
------
A
R
R
----
G
----
V
D
-
I
-----
E
A
--
V
T
--------------------------------------------------------------------------------------------------------------------------------