@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv0236A: (2016-04-20 )
MNRIVAPAAASVVVGLLLGAAAIFGVTLMVQQDKKPPLPGGDPSSSVLNRVEYGNRS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....---.....10......------------------.--.20........30...-.....40..---.------.....50......-----------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNRI---VA
P
A
A
A
S
V
V
V
G
L
L
------------------
L
--
G
A
A
A
I
F
G
V
T
L
M
V
QQDK-KPPLPGGD
P
---
S
------
S
S
V
L
N
R
V
EYGNRS-----------------------------------------------------------------------------------------------------------------------
28
Fugue
72.58
26%
-66
- C8 -
4NNB
2
?
A:
[4-527]
T
S
L
Y
I
T
A
A
P
I
GA
V
P
K
F
L
DPFEATFIP
S
F
L
L
E
GFFD
A
D
R
C
A
S
I
A
A
D
L
K
T
D
G
W
E
V
V
P
A
G
G
R
L
L
Q
V
GHAQPIAHFP
K
P
W
L
A
A
L
S
N
K
L
A
R
R
I
V
L
Q
L
T
T
Y
G
W
I
V
S
EQG
D
L
L
W
EHE
R
Q
H
H
Y
L
P
P
A
L
I
E
A
I
E
K
E
S
P
A
L
L
K
N
M
E
E
A
GW
I
A
C
A
A
GYWQAGKARSPYLPIT
P
E
A
I
T
E
E
T
I
R
S
M
R
A
GAA
V
V
H
L
H
T
R
D
LSD
R
R
R
I
E
I
P
GL
G
V
V
T
V
G
SQRNQIV
L
D
D
Y
D
A
I
V
P
M
V
K
K
R
EPA
A
I
L
N
L
S
TSVRGDRHGARSKLRRAHLKFYDDVGSAPE
V
A
S
L
S
P
A
A
V
V
F
QG
G
G
G
Y
D
NA
P
D
F
L
D
A
Q
F
D
H
F
E
R
V
GTRPEVEV
F
N
H
A
---
I
V
D
N
A
T
S
L
Y
R
D
R
L
------------------
L
R
T
G
K
P
V
L
F
M
L
V
A
G
V
D
Q
Y
R
-
R
D
P
I
T
G
E
V
E
---
D
------
D
S
L
I
A
R
V
V
R
E
E
I
S
S
L
L
A
D
ES
A
D
S
H
R
R
A
V
E
L
A
I
G
Q
L
R
P
V
V
E
R
L
R
A
S
F
PV
S
K
I
S
I
L
L
P
GPMQNLL
V
D
V
A
L
G
L
GLD
G
I
R
V
G
LEDGL
T
V
N
D
ARVPGG
V
R
K
A
RG
T
W
E
Q
V
S
L
V
R
E
E
L
L
G
R
G
A
T
I
L
T
A
A
Q
V
R
D
M
F
GLGI
22
Fugue
71.39
19%
-47
- C3 -
3C5X
2
?
C:
[1-81]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
H
L
T
---
T
R
N
G
E
P
H
M
I
V
S
R
Q
EKGKSLLFKTEDGVNMCT
L
--
M
A
M
D
L
G
E
L
C
E
D
T
I
T
Y
K
-
C
P
L
L
R
Q
N
E
P
---
E
DIDCWC
N
S
T
S
T
W
V
T
Y
G
T
C
T
-----------------------------------------------------------------------------------------------------------------------
24
Fugue
70.87
12%
-117
- C9 -
4UZZ
-
?
B:
[538-602]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASDE
F
A
S
E
K
V
R
L
A
Q
L
---
T
N
K
C
N
N
N
D
L
D
Y
Y
I
------------------
K
--
E
S
G
D
I
L
G
V
T
---------
D
K
V
K
N
K
H
D
---
A
------
K
A
I
L
R
Y
V
L
E
E
L
I
N
F
K
KLN------------------------------------------------------------------------------------------------------------------
25
Fugue
66.25
20%
-76
- C9 -
1XRD
-
LHA_RHORU
A:
[1-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
W
R
I
WQL
F
D
P
R
Q
A
L
V
G
L
A
T
F
------------------
L
--
F
V
L
A
L
L
I
H
F
I
L
L
S
T
E
R
-
F
N
W
L
E
G
A
S
T
---
K
------
P
V
Q
T
S
-------------------------------------------------------------------------------------------------------------------------------
29
Fugue
63.92
18%
-68
- C7 -
2KA4
1
B:
[1-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
H
M
V
---
P
E
P
D
L
P
H
D
L
R
H
L
N
------------------
T
--
E
P
M
E
I
F
R
N
S
V
K
I
E
E
-----
I
M
P
N
G
D
P
LLA
G
------
Q
N
T
V
D
E
V
Y
V
S
R
P
S
-----------------------------------------------------------------------------------------------------------------------
1
HHSearch
61.18
32%
-174
- C9 -
2K1K
-
EPHA1_HUMAN
A:
[542-569]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
---
T
G
G
E
I
V
A
V
I
F
G
L
L
------------------
L
--
G
A
A
L
L
L
G
I
L
V
F
R
------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
58.92
20%
-114
* C9 *
2L9U
-
ERBB3_HUMAN
A:
[637-676]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
R
T
---
H
L
T
M
A
L
T
V
I
A
G
L
V
------------------
V
--
I
F
M
M
L
G
G
T
F
L
Y
W
R
G
R
R
-
H
H
H
H
H
H
-------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
48.69
16%
-116
- C9 -
2B9B
-
?
A:
[80-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
F
---
A
G
V
V
I
G
L
A
A
L
G
V
A
------------------
T
--
A
A
Q
V
T
A
A
V
A
L
V
K
A
N
----------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
48.23
43%
-163
- C9 -
2N2A
-
?
A:
[12-25]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
A
V
V
G
I
L
------------------
L
--
V
V
V
L
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
46.10
38%
-167
- C9 -
2M20
-
EGFR_HUMAN
A:
[6-18]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
G
L
V
G
A
L
------------------
L
--
L
L
L
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
45.64
26%
-170
- C9 -
2KLU
-
A:
[371-389]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
M
A
L
I
V
L
G
G
V
------------------
A
--
G
L
L
L
F
I
G
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
45.14
13%
-153
- C1 -
4PJ0
-
PSBT_THEEB
T:
[1-11]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
T
I
T
Y
V
------------------
F
--
I
F
A
C
I
I
A
L
F
F
F
A
I
F
F
R
-
E
P
P
R
I
--------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
43.45
13%
-147
- C9 -
1AFO
-
GLPA_HUMAN
A:
[72-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
T
L
I
I
F
G
V
M
------------------
A
--
G
V
I
G
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
42.63
19%
32
- C9 -
2MA9
-
A:
[6-37]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
L
Q
Y
L
A
L
A
A
L
I
K
P
K
Q
I
K
P
P
L
P
S
V
R
K
---
L
------
T
E
D
R
W
-------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
39.49
19%
-70
- C9 -
5EJB
-
?
B:
[83-117]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
L
---
A
G
V
V
M
A
G
I
A
I
G
I
A
------------------
T
--
A
A
Q
I
T
A
G
V
A
L
Y
E
A
M
----------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
38.99
21%
-127
- C9 -
2MOF
-
LAMP2_HUMAN
A:
[375-393]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
V
P
I
A
V
G
A
A
------------------
L
--
A
G
V
L
I
L
V
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
37.67
26%
-148
- C9 -
1Q90
2
PETG_CHLRE
G:
[6-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
C
G
I
V
------------------
L
--
G
L
V
P
V
T
I
A
G
L
F
V
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
37.44
12%
-132
- C4 -
4KML
-
PRIO_HUMAN
A:
[117-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
G
A
V
------------------
V
--
G
G
L
G
G
Y
M
L
G
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
37.22
21%
-134
- C9 -
4OGQ
14
PETG_NOSS1
G:
[6-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
G
I
V
------------------
L
--
G
L
I
V
V
T
L
A
G
L
F
Y
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
35.13
31%
-147
- C2 -
5AEF
-
A4_HUMAN
A:
[29-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
I
I
G
L
M
------------------
V
--
G
G
V
V
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------