@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv1688: (2016-05-04 )
MNAEELAIDPVAAAHRLLGATIAGRGVRAMVVEVEAYGGVPDGPWPDAAAHSYRGRNGRNDVMFGPPGRLYTYRSHGIHVCANVACGPDGTAAAVLLRAAAIEDGAELATSRRGQTVRAVALARGPGNLCAALGITMADNGIDLFDPSSPVRLRLNDTHRARSGPRVGVSQAADRPWRLWLTGRPEVSAYRRSSRAPARGASD
Atome Classification :
(20 SA)
------.........10...--------.....20..-----..-----...-----------.30----......--------.-------..40..--....-..50....-.-..-.60------------....--.-----....----70........-----80......--------------------..90.....-------------------...----------100......----------.110-------.......120--.......--.130-----.....-----..140..------------.....150..-.--.---...160.------.------.....170---...-....180-.......190.......200.------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------M
N
A
E
ELAI
D
P
V
A
A
A
--------
H
R
L
L
G
A
T
IA-----GR-----
G
V
R
-----------
A
M
-----
V
V
E
V
E
A--------Y-------GGVPDG--PWPD-AAAHSYRG-R-NG-RN-------------D
V
M
F--G-----PPG
R
----
L
Y
T
Y
RSH
G
I
H
-----
V
C
A
NVACG--------------------PD
G
T
A
A
A
V
L
-------------------
L
R
A
----------
A
AIED
G
A
E
L
----------
A
T
SR-------RG
Q
T
V
R
A
V
A
---LARGPG
N
--
L
C
A
A-----L
G
I
T
M-----ADNGIDL------------FDPSS
P
V
R
L
R
-L--N---DTHRARS------G------PRVGVSQA---ADR-
P
W
R
L
W
LT-GRP
E
V
S
A
Y
RRSSRAPARGASD------
25
HHSearch
98.59
35%
-87
- C6 -
3UBY
2
3MG_HUMAN
A:
[7-214]
------
L
G
L
E
F
F
D
Q
P
A
V
P
L
A
--------
R
A
F
L
G
Q
V
L
V
-----
R
R
L
PNG
T
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
P
E
-------
D
-
E
A
A
H
S
R
G
G
R
Q
-
T
P
-
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
----------------------
G
D
G
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
----------
M
R
Q
L
-------
R
S
T
L
L
K
D
R
E
---
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
------------
A
Q
-
D
E
A
V
W
L
E
R
G
--
P
L
E
P
S
E
P
A
V
V
A
------
A
------
A
R
V
G
V
--
A
GEW
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
V
A
E
--------------
35
Fugue
97.05
34%
-89
- C6 -
1BNK
2
?
?:
[1-216]
KGHLTR
L
G
L
E
F
F
D
Q
P
A
V
P
L
A
--------
R
A
F
L
G
Q
V
L
V
R
R
L
PN
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
P
E
D
--------
E
A
A
H
S
R
G
G
-
R
Q
T
P
-
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
----------------------
Q
G
D
G
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
----------
M
R
Q
L
-------
R
S
R
V
L
K
D
R
E
---
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
------------
A
Q
-
D
E
A
V
W
L
E
-
R
--
A
---
V
V
A
A
A
R
V
------
G
------
V
G
H
A
-
G
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
V
A
E
Q
D
------------
3
PsiBlast_PDB
88.78
33%
-73
- C6 -
3QI5
2
3MG_HUMAN
A:
[35-211]
------------------------------------------
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
-
P
E
------
D
-
E
A
A
H
S
R
G
G
-
R
-
Q
T
P
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
--------------------
G
D
G
--
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
M
R
Q
L
R
-----
S
T
L
R
-------
K
-----
V
L
K
DRE
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
AQDEA
V
W
L
E
R
GP
L
E
P
S
E
P
A
V
V
A
-
A
--
A
---
R
V
G
V
----------------------
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
-----------------
4
PsiBlast_PDB
87.22
33%
-76
- C6 -
3UBY
2
3MG_HUMAN
A:
[35-211]
------------------------------------------
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
-
P
E
------
D
-
E
A
A
H
S
R
G
G
-
R
-
Q
T
P
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
--------------------
G
D
G
--
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
M
R
Q
L
R
-----
S
T
L
---------------
L
K
DRE
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
AQDEA
V
W
L
E
RGP
L
E
P
S
E
P
A
V
V
A
-
A
--
A
---
R
V
G
V
--
A
------
G
------------
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
-----------------
2
PsiBlast_PDB
86.75
33%
-74
- C6 -
1F6O
3
3MG_HUMAN
A:
[35-211]
------------------------------------------
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
-
P
E
------
D
-
E
A
A
H
S
R
G
G
-
R
-
Q
T
P
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
--------------------
G
D
G
--
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
M
R
Q
L
R
-----
S
T
L
------------
S
R
V
L
K
DRE
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
AQDEA
V
W
L
E
R
G
P
L
E
P
S
E
P
A
V
V
A
-
A
--
A
---
R
V
G
V
G
H
A
------
G
------------
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
-----------------
5
PsiBlast_PDB
83.72
33%
-75
- C6 -
1EWN
3
3MG_HUMAN
A:
[35-211]
------------------------------------------
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
Q
A
--------
Y
-------
L
G
-
P
E
------
D
-
E
A
A
H
S
R
G
G
-
R
-
Q
T
P
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
--------------------
G
D
G
--
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
M
R
Q
L
R
-----
S
T
---------------
V
L
K
DRE
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
AQDEA
V
W
L
E
R
G------
P
A
V
V
A
-
A
--
A
---
R
V
G
V
G
H
A
------
G
------------
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
-----------------
1
PsiBlast_PDB
82.86
33%
-74
- C6 -
1F4R
3
3MG_HUMAN
A:
[35-211]
------------------------------------------
G
T
-----
E
L
R
-----------
G
R
-----
I
V
E
T
E
A
--------
Y
-------
L
G
-
P
E
------
D
-
E
A
A
H
S
R
G
G
-
R
-
Q
T
P
R
N
-------------
R
G
M
F
--
M
-----
K
P
G
T
----
L
Y
V
Y
I
I
Y
G
M
Y
-----
F
C
M
N
I
S
S
Q
--------------------
G
D
G
--
A
C
V
L
-------------------
L
R
A
----------
L
E
P
L
E
G
L
E
T
M
R
Q
L
R
-----
S
T
---------------
V
L
K
DRE
L
C
S
G
P
S
K
--
L
C
Q
A
-----
L
A
I
N
K
-----
S
F
D
Q
R
D
L
AQDEA
V
W
L
E
R
G
------
P
A
V
V
A
-
A
--
A
---
R
V
G
V
G
H
A
------
G
------------
E
W
---
A
R
K
-
P
L
R
F
Y
V
R
-
G
S
P
W
V
S
V
V
D
R
-----------------
41
Fugue
60.26
21%
-92
- C5 -
2OST
1
?
A:
[1-148]
------
M
G
S
T
K
L
K
G
D
I
A
Q
Q
A
--------
A
I
M
R
A
L
K
M
------
G
W
-----
G
V
L
-----------
K
--------------------------------------
P
L
-
G
D
R
L
S
Y
-----------------------
D
L
V
F
--
D
-----
V
E
G
I
----
L
L
K
-----
V
Q
-----
V
K
S
S
W
K
S
E
--------------------
K
T
G
N
Y
V
V
D
N
-------------------
R
R
T
----------
R
T
N
R
R
N
I
V
R
----------
S
P
Y
R
-------
G
N
D
F
D
F
A
V
A
---
Y
V
E
E
L
E
L
--
F
Y
V
F
-----
P
-------------
V
D
V
------------
F
I
S
Y
G
S
-
E
I
H
-
L
--
V
---
E
T
D
K
R
Q
R
------
K
------
P
R
---
S
F
G
---
Y
R
E
-
A
W
H
L
I
L
Q
K
G
A
A
Q
K
E
---------------------
44
Fugue
57.97
16%
-42
- C2 -
2SCU
2
SUCC_ECOLI
B:
[1-244]
------
M
N
L
H
E
Y
Q
A
K
Q
L
F
A
R
Y
G
L
P
A
P
V
G
Y
A
C
T
T
P
R
E
A
-----
E
E
-----
A
A
S
-----------
K
I
GAGP
W
V
V
K
C
Q
V
--------
H
AGGRGKA
G
G
V
K
V
V
--
N
S
K
E
-
D
I
R
A
F
A
E
N
-
W
-
L
G
-
K
R
-------------
L
V
T
Y
QT
D
-----
A
N
G
Q
PVN
Q
I
L
V
E
A
A
T
D
I
A
-----
K
E
L
Y
L
G
A
V
--------------------
V
D
R
S
S
R
R
V
V
-------------------
F
M
A
S
TEGGVE
I
E
K
V
A
E
E
T
P
H
L
I
----------
H
K
V
A
L
D
PLTGP
M
P
Y
Q
G
R
E
L
A
---
F
K
L
G
L
E
G
--
K
L
V
Q
-----
Q
F
T
K
I
-----
F
M
G
L
A
T
I
------------
F
L
E
R
D
L
A
L
I
E
-
I
--
N
---
P
L
V
I
T
K
Q
------
G
DLICL
D
G
K
L
G
A
D
G
N
---
A
L
F
-
R
--------
Q
P
D
L
R
E
M
R
D
Q
S
Q
E
D
P
R
E
A
Q
-------
36
Fugue
57.26
20%
-31
* C8 *
4Q7J
-
RS1_ECOLI
D:
[3-179]
------
E
S
F
A
Q
L
F
E
E
S
L
K
E
I
--------
E
T
-----
R
P
-----
G
S
-----
I
V
R
-----------
G
V
-----
V
V
A
I
D
K
--------
D
-------
V
V
L
V
D
A
--
G
L
K
S
-
E
S
A
I
P
A
E
Q
-
F
-
K
N
-
A
Q
-------------
G
E
L
E
--
I
-----
Q
V
G
D
----
E
V
D
V
A
L
D
A
V
----------------------------------
E
D
G
F
G
E
T
L
L
-------------------
S
R
E
----------
K
A
K
R
H
E
A
W
I
----------
T
L
E
K
A
Y
E----
D
A
E
T
V
T
G
V
I
---
N
G
K
V
K
G
-------------
G
F
T
V
-----
E
L
N
G
I
R
A
------------
F
L
P
G
S
L
V
D
V
R
-
P
VR
D
---
T
L
H
L
E
G
K
------
E
------
L
E
F
K
V
I
K
L
---
D
Q
K
----------
R
N
N
V
V
V
S
R
R
A
V
I
E
S
E
N
S
---------
40
Fugue
51.64
9%
-48
* C5 *
3JZ0
6
?
A:
[22-287]
---L
K
Q
K
E
L
I
A
N
V
K
N
L
T
E
S
D
--------
E
R
I
T
A
C
M
M
Y
-----
G
S
-----
F
T
K
GEGDQY
S
D
I
E
F
Y
I
-----
F
L
K
H
S
I
--------
T
-------
S
N
F
D
S
S
--
N
W
L
F
-
D
V
A
P
Y
L
M
L
-
Y
-
K
N
-
E
Y
GTE
V
V
I
F
DNL
I
R
G
E
F
H
F
--
L
-----
S
E
K
D
----
M
N
I
I
P
S
F
K
D
S
GYIPD
T
K
A
M
L
I
Y
D
--------------------
E
T
G
Q
L
E
N
Y
L
S
E
I
SGARPNRLT
E
E
N
A
N
F
L
L
C
N
----------
F
S
N
L
W
L
M
G
I
----------
N
V
L
K
-------
R
G
E
Y
A
R
S
L
E
---
L
L
S
Q
L
Q
K
--
N
T
L
Q
-----
L
I
R
M
A
-----
E
K
N
A
D
N
W
------------
L
N
M
S
K
N
L
E
K
E
-
I
--
S
---
L
E
N
Y
K
K
F
A
K
T
TAR
L
------
D
K
V
E
L
F
E
A
---
Y
K
N
-
S
L
L
L
V
M
D
-
L
Q
S
H
L
I
E
Q
Y
N
L
K
V
T
H
D
I
L
E
R
L
L
N
Y
I
SE
39
Fugue
51.40
14%
-54
* C7 *
4XD9
-
?
A:
[19-254]
---------
K
E
P
Q
L
I
E
G
A
K
R
--------
V
L
L
L
H
G
S
K
C
-----
P
T
-----
P
L
H
-----------
T
V
-----
L
K
V
F
H
S
L
T
TPH
S
V
L
F
-------
H
K
K
N
E
N
IH
P
F
E
S
T
E
S
L
E
F
L
A
N
-
K
-
N
D
-
C
G
-------------
M
V
I
F
--
G
S
S
N
KK
R
P
N
C
----
L
T
I
A
R
I
F
D
S
K
-----
V
L
D
M
A
E
L
L
L
L
P
D
ANGEGIPEMNRLSMHV
A
I
G
L
R
P
L
M
L
-------------------
F
S
G
----------
S
A
W
D
D
T
T
S
T
----------
T
H
T
M
-------
L
K
S
M
L
V
D
L
F
---
K
G
E
T
S
D
K
--
I
D
V
E
GLQ
Y
A
L
M
V
G
A
-----
E
E
P
T
---------------
A
G
L
A
P
I
I
H
L
R
-
W
--
Y
---
K
I
V
T
K
R
S
------
G
------
H
K
L
P
R
V
E
L
---
E
E
I
G
P
K
L
D
F
K
V
-
G
R
I
Q
E
A
P
R
D
V
M
K
E
A
M
K
Q
G
---------
38
Fugue
49.42
10%
-37
- C8 -
1GO3
-
RPOE1_METJA
E:
[1-184]
------
M
Y
K
I
L
E
I
A
D
V
V
K
V
P
--------
P
E
E
F
G
K
D
L
K
-----
E
T
-----
V
K
K
-----------
I
L
-----
M
E
K
Y
E
-----------------------------------------------------------
G
R
L
D
--
K
-----
D
V
G
F
----
V
L
S
I
V
D
V
K
D
I
-----
G
E
G
K
V
V
H
G
--------------------
D
G
S
A
Y
H
P
V
V
-------------------
F
E
T
----------
L
V
Y
I
P
E
M
Y
E
----------
L
I
E
G
-------
E
V
V
D
V
V
E
F
G
---
S
F
V
R
L
G
P
--
L
D
G
L
-----
I
H
V
S
Q
-----
I
M
D
D
Y
V
S
------------
Y
D
P
K
A
I
I
G
K
E
-
T
--
G
---
K
V
L
E
I
G
D
------
Y
------
V
R
A
R
I
V
A
I
---
S
L
K
-
A
S
K
I
A
L
T
-
M
R
Q
P
-
Y
L
G
K
L
E
W
I
E
E
E
K
A
K
K
Q
------
19
PsiBlast_PDB
48.02
29%
-77
- C11 -
4G09
2
HISX_BRUSU
A:
[153-239]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
D
-----
R
I
V
M
V
V
P
A
--------------------
P
D
G
N
L
N
P
L
V
-------------------
L
V
A
----------
A
R
L
A
G
V
S
E
I
YRVGG
A
Q
A
I
A
A
L
A
Y
-------
G
T
E
T
I
R
P
V
A
---
K
I
V
G
P
G
N
A
Y
V
A
A
A
-----
K
R
I
V
F
-----
G
T
V
G
I
D
M
------------
I
A
G
P
S
E
V
---------------------------------------------------------------------------------
18
PsiBlast_PDB
47.42
29%
-69
* C11 *
4G07
1
HISX_BRUSU
A:
[153-243]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
D
-----
R
I
V
M
V
V
P
A
--------------------
P
D
G
N
L
N
P
L
V
-------------------
L
V
A
----------
A
R
L
A
G
V
S
E
I
YRVGG
A
Q
A
I
A
A
L
A
Y
-------
G
T
E
T
I
R
P
V
A
---
K
I
V
G
P
G
N
A
Y
V
A
A
A
-----
K
R
I
V
F
-----
G
T
V
G
I
D
M
------------
I
A
G
P
S
E
V
---------------------------------------------------------------------------------
42
Fugue
45.88
20%
-26
- C7 -
2JVU
-
?
A:
[1-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--------------------
G
S
G
W
N
A
D
N
V
-------------------
D
P
S
----------
Q
C
I
K
Q
S
G
V
Q
----------
Y
T
Y
N
-------
S
G
V
S
V
C
M
Q
G
---
L
N
E
G
K
V
R
--
G
V
S
V
-----
S
G
V
F
Y
Y
NDG
T
T
S
N
F
K
G
V
------------
V
T
P
S
T
P
V
N
T
N
-
Q
--
D
---
I
N
K
T
N
K
V
------
G
------------
V
Q
---
K
Y
R
-
A
L
T
E
W
V
G
-
S
R
S
------------------------
7
PsiBlast_PDB
40.82
36%
-40
- C6 -
2DPX
2
RAD_HUMAN
A:
[12-69]
------------------------------
L
L
G
A
P
G
V
-----
G
K
-----
S
A
L
-----------
A
R
-----
I
-------------
F
-------
G
G
V
E
------------
H
T
Y
------
D
-
R
S
-------------
I
V
V
D
--
G
-----
E
E
A
S
----
L
M
V
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
39.15
38%
-68
- C6 -
4KR6
1
THII_THEMA
A:
[132-172]
-------
N
F
K
E
L
S
V
D
-
V
R
N
P
--------
D
F
V
L
G
V
E
V
R
-----
P
E
-----
G
V
L
-----------
I
F
-----
T
D
R
V
E
C
--------
Y
-------
G
G
L
P
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
38.59
38%
-46
- C6 -
4KR7
-
THII_THEMA
A:
[132-172]
-------
N
F
K
E
L
S
V
D
-
V
R
N
P
--------
D
F
V
L
G
V
E
V
R
-----
P
E
-----
G
V
L
-----------
I
F
-----
T
D
R
V
E
C
--------
Y
-------
G
G
L
P
V
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_CBE
38.18
36%
-42
- C6 -
2GJS
2
B:
[12-77]
------------------------------
L
L
G
A
P
G
V
-----
G
K
-----
S
A
L
-----------
A
R
-----
I
-------------
F
-------
G
G
V
E
------------
H
T
Y
------
D
-
R
S
-------------
I
V
V
D
--
G
-----
E
E
A
S
----
L
M
V
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------