@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0210: (2015-12-26 )
METLTFEFPAGAPARGRALAGCVGSGDLEVLLEPAAGGALSIQVVTSVNGSGPRWQQLFARVFAASTAPAASIRIHDFGATPGVVRLRLEQALEEAGHD
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------.........10.-..----..----..-.20........30..-......40-..---------......----50......------...60....------..------...70..----.--....--..80-..-.------..-------------....90------........----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------ME
T
L
T
F
EFPAGA-PA----RG----
R
A
-
L
A
GCVGSG
D
L
E
V
L
L
E-PAAG
G
A
L
S
-
I
Q
---------
V
V
T
SVN----G-SG
P
R
W
Q
------
Q
L
F
A
-
R
V
F
A------AS------TAP
A
-
A
S
----
I
--
R
I
H
D--FGA--TP-
G
------
V
V
-------------
R
L
R
L
E
Q
------
A
L
E
EAGHD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
83.26
21%
-97
* C5 *
2LN3
-
?
A:
[1-83]
--------------------------------------------------------------------------------------------------------------------------------------
M
G
-
L
T
R
T
I
T
S
Q
N
K
E
E
L
L
E
-
I
A
L
K
F
I
S
Q
G
L
D
---------
L
E
V
E
F
D
----
S
-
T
D
D
K
E
I
------
E
E
F
E
-
R
D
M
E
------
D
L
------
A
K
K
T
G
V
Q
----
I
--
Q
K
Q
W
--
Q
G
------
N
------
K
L
-------------
R
I
R
L
K
G
------
S
L
E
H
H
H
H
H
H---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
80.00
17%
-86
- C2 -
1PM4
-
?
A:
[15-131]
----------------------------------------------------------------------------------------------------------I
P
N
I
A
T
Y
T
G
T
I
Q
G
K
G
-
E
V
----
C
I
----
I
G
N
K
E
G
K
T
R
G
G
E
L
Y
A
V
L
H
S
T
N
V
N
A
D
M
T
-
L
I
---------
L
L
R
N
V
G
----
G
-
N
G
--
W
G
------
E
I
K
R
-
N
D
------------------
I
D
-
K
P
----
L
--
K
Y
E
D
--
Y
-
Y
--
T
S
-
G
L
S
W
---
I
W
-------------
K
I
K
N
N
S
SET
S
N
Y
S
L
D
A
T
V
H
D
DKEDSDVLTKCPV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
68.52
17%
-78
- C5 -
4FPR
-
?
A:
[1-130]
------------------------------------------------------------------------------------------------------A
Y
V
C
R
E
A
S
I
S
G
E
I
R
Y
P
Q
G
T
C
P
T
----
K
T
----
E
A
-
L
N
D
C
N
K
V
T
K
G
L
I
D
F
S
-
Q
S
H
Q
R
A
W
G
-
I
D
---------
M
T
A
K
V
Q
C
A
PC
K
-
T
T
D
P
W
D
V
V
L
C
T
C
K
I
T
A
-
H
R
Y
R
------
E
F
------
V
P
K
--------
I
--
P
Y
S
S
--
F
S
S
--
A
P
-
G
------
V
I
FRQETGLDH
D
P
E
W
V
V
N
M
K
A
------
R
T
R
G
C
D
H
H
HHH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
63.51
13%
-67
- C5 -
2JOE
-
YEHR_ECOLI
A:
[1-139]
--------------------------------------------------------------------------------------------MGDKE
E
S
K
K
F
S
A
NLNGT
E
I
A
I
T
Y
V
Y
K
-
G
D
-
K
V
----
L
K
----
Q
S
-
S
E
T
K
I
Q
F
A
S
I
G
A
T
T
K
-
E
D
A
A
K
T
L
E
-
P
L
SAKYKNIAG
V
E
E
K
L
T
----
Y
-
T
D
T
Y
A
Q
------
E
N
V
T
-
I
D
M
E
------
K
V
------
D
F
K
A
-
L
Q
G
I
SG
I
--
N
V
S
A
--
E
D
A
--
K
K
-
G
------
I
T
-------------
M
A
Q
M
E
L
------
V
M
K
A
A
G
F
K
EVKLEHHHHHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
62.24
10%
-68
- C5 -
1YOZ
-
Y941_ARCFU
A:
[9-124]
----------------------------------------------------------------------------------------------------------GHM
L
Y
I
N
S
F
L
D
R
M
G
E
-
I
I
----
R
G
EKSV
E
E
-
A
D
K
L
L
D
Q
K
N
I
F
E
M
F
R
-
S
D
C
E
E
I
L
N
-
L
Y
---------
K
S
G
K
A
E
----
K
-
E
E
V
Q
R
N
------
F
Y
L
L
-
K
T
Y
V
------
V
S
------
Q
L
S
I
-
H
F
----
E
--
R
L
K
E
--
F
A
E
--
S
K
-
G
E
K
K
L
D
P
E
V
-------------
I
N
E
I
A
L
------
Y
I
D
R
V
E
K
E
V---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
61.97
13%
-104
- C5 -
2Z4P
1
?
A:
[1-75]
-------------------------------------------------------------------------------------------------------------
M
V
T
A
F
I
L
M
V
T
A
-----------------------
A
G
K
E
R
E
V
M
E
-
K
L
L
A
M
P
-
E
-
V
K
---------
E
A
Y
V
V
Y
----
G
-
E
----
Y
------
D
L
I
V
-
K
V
E
T
------
D
T
------
L
K
D
L
-
D
Q
----
F
--
I
T
E
K
--
I
R
K
--
M
P
-
E
------
I
Q
-------------
M
T
S
T
M
I
------
A
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
59.22
14%
-78
- C5 -
2CVI
2
?
A:
[1-83]
-------------------------------------------------------------------------------------------------------------
M
V
T
A
F
I
L
M
V
T
A
-----------------------
A
G
K
E
R
E
V
M
E
-
K
L
L
A
M
P
----
E
---------
V
K
E
A
Y
V
----
V
-
Y
G
E
--
Y
------
D
L
I
V
-
K
V
E
T
------
D
T
------
L
K
D
L
-
D
Q
----
F
--
I
T
E
K
--
I
R
K
--
M
P
-
E
------
I
Q
-------------
M
T
S
T
M
I
------
A
I
L
E
H
H
H
H
HH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
57.14
20%
-48
- C5 -
2QFF
-
SCIN_STAAR
A:
[9-82]
--------------------------------------------------------------------------------------------------------------------------
E
Y
----
Q
N
----
E
K
-
L
A
N
E
L
K
S
L
L
D
E
L
N
V
N
-
E
L
A
T
G
S
L
N
------------------------------------
T
Y
Y
K
-
R
T
I
K
------
I
S
------
G
Q
K
A
-
Y
A
----
L
--
K
S
K
D
--
F
----
K
K
M
S
------
E
A
-------------
K
Y
Q
L
Q
K
------
I
Y
N
E
I
D
E
A
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
56.43
27%
-83
- C4 -
2XWT
-
?
A:
[41-88]
--------------------------------------------------------------------------------------------------------------------------
P
G
----
K
G
----
L
E
-
W
M
G
I
I
Y
P
G
D
S
D
T
R
Y
S
-
P
S
F
Q
G
Q
V
T
-
I
S
---------
A
D
K
S
I
N
----
T
-
A
Y
L
Q
W
S
------
S
L
K
A
-
S
D
T
A
------
I
Y
------
Y
C
V
G
-
L
D
----
W
--
N
Y
N
P
--
L
R
Y
--
W
G
-
P
------
G
T
-------------
L
V
T
V
S
S
------
A
S
T
K
G
P
S
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
56.07
18%
-62
- C3 -
4P42
2
ESYT2_HUMAN
A:
[3-470]
D
T
E
R
A
E
W
L
N
K
T
V
K
H
M
W
P
F
I
C
Q
F
I
E
K
L
F
R
ET
I
E
P
A
V
R
G
ANTHLSTFSFTKVDVGQ
Q
P
L
R
I
N
G
V
K
V
Y
T
E
NVDKR
Q
I
I
L
D
L
Q
I
S
F
V
G
N
C
E
I
D
L
E
IKRYF
C
R
A
G
V
K
S
I
Q
I
H
G
T
M
R
V
I
L
E
P
L
I
G
D
M
-
P
L
----
V
G
----
A
L
-
S
I
F
F
L
R
K
P
L
L
E
I
N
W
T
-----
G
L
T
N
-
L
L
---------
D
V
P
G
L
N
----
G
L
S
D
T
I
I
L
------
D
I
I
S
-
N
Y
L
V
LP
N
R
I
T
V
P
------
L
V
S
E
-
V
Q
----
I
--
A
Q
L
R
--
F
P
V
--
P
K
-
G
------
V
L
-------------
R
I
H
F
I
E
------
A
Q
D
L
Q
G
K
D
TYLKGLVKGKSD
P
Y
G
I
I
R
V
GN
Q
I
F
Q
S
R
V
I
K
ENLSPKWN
E
V
Y
E
A
L
V
Y
EHPG
Q
E
L
E
I
E
L
F
D
EDPDKDDFL
G
S
L
M
I
D
L
I
E
V
E
K
E
R
L
L
D
E
W
F
T
L
D
EVP
K
G
K
L
H
L
R
L
E
W
L
T
L
M
PNASN
L
D
K
V
L
T
D
IGLSS
A
L
L
I
L
Y
L
D
SARNLPSSSNPN
P
V
V
Q
M
S
VGH
K
A
Q
E
S
K
I
R
Y
KTN
E
P
V
W
E
E
N
F
T
F
F
I
HNPKR
Q
D
L
E
V
E
V
R
D
EQHQCSL
G
N
L
K
V
P
L
S
Q
L
L
T
SEDM
T
V
S
Q
R
F
Q
L
S
NSGPN
S
T
I
K
M
K
I
A
L
R
V
L
H
L
E
2
PsiBlast_PDB
40.59
41%
-69
- C1 -
2ETN
-
GFH1_THEAQ
A:
[83-111]
---------------------------------------------------------------------------------------------------------------------------------------------
I
G
L
G
S
V
V
E
L
E
D
-
P
A
T
G
E
R
L
S
-
V
Q
---------
V
V
S
P
A
E
----
A
-
S
V
L
E
N
P
------
M
K
I
S
-
D
A
S
P
------
M
G
------
K
A
L
L
-
G
H
----
R
--
V
G
D
V
--
L
S
L
--
D
T
-
P
------
K
G
-------------
K
K
E
F
R
V
------
V
A
I
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
40.57
13%
-107
- C6 -
2HEU
-
?
A:
[11-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------
L
F
Q
-
G
P
S
-
S
T
V
T
-
I
E
---------
Y
F
N
Q
K
K
----
E
-
M
T
K
T
L
E
------
E
I
T
R
-
D
F
E
K
------
E
N
--------
P
K
-
I
-----
V
--
K
V
V
N
--
V
P
N
--
A
G
-
E
------
V
L
-------------
K
T
R
V
L
A
------
G
D
V
P
D
V
V
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
39.13
16%
-75
- C6 -
2AYA
-
A:
[53-112]
-------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
C
-
L
H
---------
L
R
S
S
Q
R
H---
L
-
N
N
R
G
A
Q
------
Q
K
L
A
-
E
A
L
S
------
M
L
------
K
G
S
T
-
V
E
----
L
T
I
V
E
D
D
NP
A
V
R
--
T
P
-
L
------
E
W
-------------
R
Q
A
I
Y
E
------
E
K
L
A
Q
A
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
36.44
13%
-98
- C6 -
2DCL
2
Y1503_PYRHO
A:
[2-46]
----------------------------------------------------------------------------------------------------------------------------------------------------
V
E
V
E
-
H
W
N
T
L
R
L
R
-
I
Y
---------
I
G
E
N
D
K
----
W
-
E
G
R
P
L
Y
------
K
V
I
V
-
E
K
L
R
------
E
M
------
G
I
A
G
-
A
T
----
V
--
Y
R
G
I
--
Y
G
F
--
G
T
-
D
------
L
P
-------------
I
I
V
E
V
V
------
D
R
G
H
N
I
E
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
29.23
13%
-78
- C6 -
2VXA
18
DODEC_HALHL
A:
[9-63]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
---------
L
T
G
S
S
P
N---
G
-
I
E
E
A
V
N
------
N
A
I
A
-
R
A
G
E
------
T
L
RHL
R
W
F
E
V
V
D
-
T
R
----
G
--
H
I
E
G
--
G
R
V
--
N
H
-
W
------
Q
V
-------------
T
V
K
V
G
F
------
T
L
E
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
26.98
9%
-52
* C6 *
1P9Y
-
TIG_ECOLI
A:
[4-47]
--------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
V
S
V
E
-
T
T
Q
G
L
G
R
R
-
V
T
---------
I
T
I
A
A
D
----
S
-
I
E
T
A
V
K
------
S
E
L
V
-
N
V
A
K
------
K
V
------
R
I
D
G
-
L
R
----
K
--
G
K
V
P
--
M
N
I
--
V
A
-
Q
------
R
Y
-------------
G
A
S
V
R
Q
------
D
V
L
G
D
L
M
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
26.40
11%
-54
- C6 -
3LG8
-
VATE_METJA
A:
[120-198]
---------------------------------------------------------------------------------------------------------------------------------------------
L
G
G
G
E
L
I
V
R
L
N
-
K
R
D
M
E
L
I
D
-
D
S
---------
T
L
W
N
L
E
K---
E
-
V
E
N
A
T
K
------
K
V
T
V
L
K
K
G
E
------
P
V
------
D
I
A
G
-
G
C
----
I
--
I
E
T
A
--
D
G
L
KS
L
D
-
N
------
S
L
-------------
E
A
I
F
N
R
------
N
L
N
V
I
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
22.82
9%
-77
- C6 -
1Z7M
-
HISZ_LACLA
A:
[157-190]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
I
L
------
S
L
A
L
-
Q
V
I
E
------
Q
L
------
G
L
N
K
-
T
V
----
F
--
E
I
G
S
--
A
K
F
--
F
Q
-
R
------
L
C
-------------
Q
L
A
D
G
S
------
T
E
L
L
T
E
L
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.72
6%
-49
- C6 -
1USY
-
HISZ_THEMA
A:
[108-140]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
L
------
E
I
I
V
-
E
S
A
S
------
E
F
------
F
E
G
P
-
V
I
----
V
--
E
I
G
H
--
T
G
V
--
Y
E
-
D
------
L
L
-------------
K
E
I
P
K
D
------
L
H
E
K
V
L
N
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
16.82
22%
-28
- C6 -
2B8I
-
?
A:
[33-63]
--------------------------------------------------------------------------------------------------------------
E
Q
L
D
L
P
F
D
K
Q
L
-
A
L
Y
A
G
A
L
G
----
P
A
-
S
S
G
K
L
E
N
H
E
A
I
S
N
A
V
-
D
S
V
V
Q
L
L
E
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------