@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA0578: (2016-01-10 )
MSEIKSRLLDAVKVAMRAQDKPRLTTLRLALADIKRVEVDERIEVDDARALLILDRMIKQRRDAQRQFSDAGRQDLAEVEAAEILVLQDFMPKPLDDHEIDALIERSIVDSGAQGPQDMGKAMNLLRPQVQGRVDMAQVSQRLKARLSS
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....-...---..10........20-----........-----------------30........40..-.......50.......------.------60........70........80........90...---------..-...------100.....----..110.-------.-..-...120..------....------.130----........140.......---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
E
I
-
K
S
R
---
L
L
D
A
V
K
V
A
M
RAQDK-----PRL
T
T
L
R
L
-----------------
A
L
A
D
I
K
RVEVD-
E
R
-IEVDD
A
R
A
L
L
I
L
D
R
M
I
------
K
------
Q
R
R
D
A
Q
R
Q
F
S
D
A
G
R
Q
D
L
A
E
V
E
A
A
E
I
L
V
L
Q
DFMPKP---------LD-
D
H
E
------
I
D
A
L
I
E
R
S
----
I
VDSGA-------Q-
G
P
-
Q
D
M
G
K
A
M
N
------
L
L
R
P
------
Q
V-Q----GRV
D
M
A
Q
V
S
Q
R
L
K
A
R
LSS---------------
45
Fugue
96.22
29%
-86
- C4 -
1NG6
-
YQEY_BACSU
A:
[1-148]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
-
L
-
L
E
R
---
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
-----
D
K
L
T
V
V
R
M
-----------------
V
K
A
S
L
Q
N
E
A
I
K
-
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
------
K
------
Q
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
---------
L
S
-
E
E
E
------
L
R
T
I
V
N
E
T
----
I
A
E
V
G
A
-------
S
-
S
K
-
A
D
M
G
K
V
M
G
------
A
I
M
P
------
K
V
-
K
----
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------
29
HHSearch
95.68
28%
-85
- C4 -
1NG6
-
YQEY_BACSU
A:
[1-148]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
L
-
L
E
R
---
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
-----
D
K
L
T
V
V
R
M
-----------------
V
K
A
S
L
Q
N
E
A
I
K
-
L
K
K
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
------
K
------
Q
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
---------
L
S
-
E
E
E
------
L
R
T
I
V
N
E
T
----
I
A
E
V
G
A
-------
S
-
S
K
-
A
D
M
G
K
V
M
G
------
A
I
M
P
------
K
V
-
K
----
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------
1
PsiBlast_PDB
92.21
28%
-84
- C4 -
1NG6
-
YQEY_BACSU
A:
[6-148]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
---
L
N
Q
D
M
K
L
Y
M
K
N
R
E
K
-----
D
K
L
T
V
V
R
M
-----------------
V
K
A
S
L
Q
N
E
A
I
K
L
K
K
-
D
S
L
T
E
D
E
E
L
T
V
L
S
R
E
L
------
K
------
Q
R
K
D
S
L
Q
E
F
S
N
A
N
R
L
D
L
V
D
K
V
Q
K
E
L
D
I
L
E
V
Y
L
P
E
Q
---------
L
S
-
E
E
E
------
L
R
T
I
V
N
E
T
----
I
A
E
V
G
A
-------
S
-
S
K
-
A
D
M
G
K
V
M
G
------
A
I
M
P
------
K
V
-
K
----
G
K
A
D
G
S
L
I
N
K
L
V
S
S
Q
L
S
----------------
17
PsiBlast_PDB
70.09
25%
-46
- C4 -
3EK8
-
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
D
TDS
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
20
PsiBlast_PDB
69.37
25%
-47
- C4 -
3SG6
-
A:
[356-439]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
---------S
E
E
---
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
12
PsiBlast_PDB
69.34
25%
-55
- C4 -
3EVR
-
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
D
TDS
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
A
-------------------------------------------------
50
Fugue
68.69
22%
-33
- C5 -
4R2F
1
?
A:
[38-431]
------------------------------------------G
A
I
K
F
W
D
M
PWAT
P
A
Y
N
D
A
A
K
K
I
A
E
G
FSGAN
S
K
A
T
Y
Q
I
I
Q
WNN
F
Y
Q
T
F
S
S
A
I
A
S
KTGPA
V
S
T
G
G
GF
Q
A
F
Q
F
E
E
Q
GQIAYA
D
K
V
I
E
K
L
K
S
N
GQFDDFLPGVVEPFKTSKGYV
A
V
P
W
Q
L
D
I
R
P
L
W
Y
R
K
S
L
F
E
K
A
GVGVPTD
W
A
S
L
L
E
A
G
K
K
L
K
G
V
GAVG
F
A
T
G
SGAGNN
I
G
N
H
L
M
I
M
M
M
L
N
N
GGGVFTKDGELDVLN
D
R
N
V
E
A
V
E
F
L
L
E
L
V
S
N
GVIDPAAVSYT
T
D
N
L
N
A
Q
W
K
D
SKAA
Y
G
M
L
T
L
G
V
P
E
R
V
GDTSGD
I
V
V
A
S
P
IAGPHG
D
K
A
A
L
I
F
P
N
N
I
M
M
Y
TNTPS
Q
E
A
S
E
E
F
V
V
Y
Y
L
G
K
L
K
E
L
W
Q
Q
K
---
L
M
N
A
L
P
V
F
K
S
I
T
E
M
-----
P
E
F
T
A
---------------------------------------
D
P
N
N
V
K
I
V
N
E
Y
V
------
P
------
I
A
K
T
F
A
S
Q
-
G
T
A
L
S
A
N
L
A
A
L
D
G
-------------------------------------------------------------------
G
Q
A
L
N
------
Q
F
T
Q
------
T
V
L
T
----
G
K
T
D
A
K
S
A
L
T
A
F
D
T
G
L
K
S
V
LKK-----------
13
PsiBlast_PDB
68.33
25%
-49
- C4 -
3EVU
-
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
D
T
D
S
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
A
-------------------------------------------------
16
PsiBlast_PDB
67.67
25%
-40
- C4 -
3EK7
-
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
D
T
D
S
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
19
PsiBlast_PDB
67.59
25%
-54
- C4 -
3SG2
-
GFP_AEQVI
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
Y
TDS
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
46
Fugue
65.97
21%
-59
* C5 *
1TYG
1
THIG_BACSU
A:
[1-242]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLTIGGKSFQSR
L
L
L
G
TGKYPS
F
D
I
Q
K
E
A
V
A
V
S
ESD
I
L
T
F
A
V
R
RMNIFEASQPNFLEQLDLSK
Y
T
L
L
P
N
T
A
G
A
-
S
T
----
A
E
E
A
V
R
I
A
R
L
A
K
A
S
-----
G
L
C
D
M
I
K
V
-----------------
E
V
-----
I
G
C
S
-
R
S
-
L
L
P
D
P
V
E
T
L
K
A
S
E
Q
L
L
------
E
------
E
G
F
I
V
L
P
Y
T
S
D
----
D
V
V
L
A
R
K
L
E
E
L
G
V
H
A
I
M
P
G
A
SPIGSGQGI
L
N
-
P
L
N
------
L
S
F
I
I
E
Q
A
K
V
P
V
I
V
D
A
G
I
-------
G
-
S
P
-
K
D
A
A
Y
A
M
E
L
GAD
G
V
L
L
N
T
------
A
V
-
S
----
G
A
D
D
P
V
K
M
A
R
A
M
K
L
A
V
E
A
G
R
L
S
Y
E
A
G
R
I
P
LKQY
14
PsiBlast_PDB
65.44
25%
-41
- C4 -
3EVV
-
A:
[355-438]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
-------SE
E
---
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
48
Fugue
65.29
14%
-33
- C4 -
3IP4
1
GATB_STAAM
B:
[1-482]
M
H
F
E
T
V
I
G
L
E
V
H
V
E
L
KTDSKMFSPSPAHFGAEPNSNTNVIDLAYPG
V
L
P
V
V
N
K
R
A
V
D
W
A
M
R
A
A
M
A
L
N
M
E
I
A
T
E
S
K
F
D
R
K
N
Y
F
Y
PDNPKAY
Q
I
S
Q
F
DQPIGEN
G
Y
I
D
I
E
V
D
G
E
T
K
R
I
G
I
T
R
L
H
M
E
E
D
A
G
K
S
T
H
K
G
E
Y
S
L
V
D
LNRQG
T
P
L
I
E
I
V
S
EPDIRS
P
K
E
A
Y
A
Y
L
E
K
L
R
S
I
I
Q
Y
T
GVSDVKMEEGS
L
R
C
D
A
N
I
S
L
R
P
Y
GQEKF
G
T
K
A
E
L
K
NLNS
F
N
Y
V
R
K
G
L
E
Y
E
E
K
R
Q
E
E
E
L
L
N
G
G
E
I
G
Q
E
T
R
R
F
D
ESTG
K
T
I
L
M
R
V
K
E
GSDDYRYFPEPDI
V
P
L
Y
I
D
D
A
W
K
E
R
V
R
Q
T
IPEL
P
D
E
R
K
A
K
Y
V
NELGLP
A
Y
D
A
H
V
L
T
LT
K
E
M
S
D
F
F
E
S
T
I
E
H
GAD
V
K
L
T
S
N
W
L
-
M
G
G
---
V
N
E
Y
L
N
K
N
Q
V
E
L
L
D
-----
T
K
L
T
P
E
N
L
-----------------
A
G
M
-
I
K
L
I
E
D
G
-
T
----
M
S
S
K
I
A
K
K
V
F
P
E
L
A
------
A
------
K
G
G
N
A
K
Q
I
M
E
D
N
G
L
V
Q
I
S
D
E
A
T
L
L
K
F
V
N
E
A
L
D
N
N
E
---------
Q
S
-
V
E
D
------
Y
K
N
----------------------
G
-
K
G
-
K
A
M
G
F
L
V
G
------
Q
I
M
K
------
A
S
-
K
----
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
K
R
LEHHHHH-------
11
PsiBlast_PDB
63.81
25%
-59
- C4 -
3U0K
-
?
A:
[346-429]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
D
-
G
T
I
D
F
P
E
F
L
I
M
M
A
R
K
--------E
E
----
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
--------------------------------------------------
53
Fugue
58.46
17%
-45
- C6 -
3HL6
1
?
A:
[2-214]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
I
E
T
I
V
N
E
F
E
T
-
R
A
G
---
T
L
L
R
Y
Y
T
G
L
L
E
R
S
K
-----
V
Q
P
C
C
F
K
L
YNDPFD
M
V
Y
V
M
M
NS
K
L
F
S
H
V
Y
I
K
D
C
K
V
R
-
Q
S
-
F
E
L
A
S
P
K
H
T
E
G
L
I
R
S
I
------
E
------
G
H
Y
V
G
Y
E
L
H
D
--
G
K
Q
L
S
I
S
D
M
M
A
S
Q
L
F
E
D
E
Y
F
M
Y
G
---------
L
Q
-
T
Y
Q
SSNTD
V
I
A
N
I
E
M
L
Y
----
Q
L
A
T
G
I
-------
N
-
E
P
V
P
E
L
V
E
G
L
K
------
L
V
T
E
------
F
V
-
Q
DENA
T
Q
E
D
Y
K
A
L
E
R
K
L
N
D
L
K
A
S
Y
Y
SLSKL--------
18
PsiBlast_PDB
58.27
25%
38
- C4 -
3O78
3
CALM_HUMAN (first)
A:
[320-402]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
N
E
V
D
A
D
-
G
N
-
G
T
I
D
F
P
E
F
L
T
M
M
A
R
K
M
------
K
D
T
D
S
E
E
E
I
R
E
A
F
R
V
F
D
K
D
G
N
---
G
Y
I
S
A
A
E
L
R
H
V
M
T
N
L
G
E
K
---------
L
T
-
D
E
E
------
V
D
E
M
I
R
E
A
----
D
I
D
G
D
G
-------
Q
-
V
N
-
Y
E
E
F
V
Q
M
M
------
T
A
K
------------------------------------------------
47
Fugue
57.03
14%
-51
- C5 -
3DD7
11
DOC_BPP1
A:
[1-123]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
R
H
I
-
S
P
E
---
E
L
I
A
L
H
D
A
N
I
S
R
Y
G
G
L
P
G
M
S
D
P
G
R
A
E
A
-----------------
I
I
G
R
V
Q
A
R
V
A
Y
-
E
E
-
I
T
D
L
F
E
V
S
A
T
Y
L
V
A
T
A
------
R
------
G
Y
-----
I
F
N
D
-
A
N
K
R
T
A
L
N
S
A
L
L
F
L
R
R
N
G
V
Q
V
F
D
---------
S
P
-
E
-------------------------------------------
L
A
D
------
L
T
V
G
------
A
A
-
T
----
G
E
I
S
V
S
S
V
A
D
T
L
R
R
L
Y
G
----------------
32
HHSearch
53.74
8%
-51
- C4 -
3AL0
-
GATB_THEMA
B:
[370-481]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
P
Q
H
F
A
D
L
F
K
L
M
D
E
GKIS
I
K
------
I
A
K
E
I
F
P
E
V
F
E
T
G
K
--------
M
P
S
Q
I
V
E
E
K
G
L
T
Q
---------
I
N
D
E
K
L
------
I
E
E
L
V
K
K
A
----
M
E
Q
N
P
K
A
V
Q
D
Y
K
-
S
G
K
K
-
K
A
A
G
F
F
V
G
------
Y
V
M
R
------
E
T
-
K
----
G
K
A
N
P
E
L
T
N
R
I
I
Q
K
L
L
E
G
---------------
34
HHSearch
53.11
11%
-46
- C4 -
3IP4
-
GATB_STAAM
B:
[363-473]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
P
E
N
L
A
G
M
I
K
L
I
E
D
G----
T
------
M
S
S
K
I
A
K
K
V
F
P
E
----
L
A
A
K
G
G
N
A
K
Q
I
M
E
D
N
G
L
V
Q
---------
I
S
D
E
A
T
------
L
L
K
F
V
N
E
A
----
L
D
N
N
E
Q
S
V
E
D
Y
K
N
G
-
K
G
-
K
A
M
G
F
L
V
G
------
Q
I
M
K
------
A
S
-
K
----
G
Q
A
N
P
Q
L
V
N
Q
L
L
K
Q
E
L
D
K
---------------
51
Fugue
52.18
22%
-7
- C5 -
1EFN
2
NEF_HV1BR
B:
[18-150]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
Q
V
-
P
L
R
P
M
T
Y
K
A
A
V
D
L
S
H
F
L
K
E
K
-----
G
G
L
E
G
L
------------------------------------
I
H
S
Q
R
R
Q
D
I
L
D
L
W
I
------
Y
------
H
T
Q
G
Y
F
P
D
W
-------------------
Q
N
Y
T
P
G
P
-------------------------------------
G
V
-------
R
-
Y
P
-
L
T
F
G
W
C
Y
K
------
L
V
P
V
R
E
V
L
E
W
R
F
-
D
----
S
R
L
A
F
H
H
V
A
R
E
L
H
P
E
Y
F
----------------