@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1228: (2016-01-27 )
MVTHFLSESGQAACGRGDSNVNGSSDVGQVSCKTCRRTNAFAQAQENAAPASAPVTPTAAAPVIDKAAPRPKAEARLAAAQRQDRDAARKAWQARLNELSGKNRMPRSRRRAQAYL
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30.....--...40........50........60........70........80.........90........100.......110....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------M
V
T
H
FLSESGQAACGRGDSNVNGSSDV
G
Q
V
S
C
K
T
CR--RT
N
A
F
A
Q
A
QENAAPASAPVTPTAAAPVIDKAAPR
P
K
A
E
A
R
L
A
A
A
-QRQ
D
R
D
A
A
R
K
A
W
Q
A
R
L
N
ELSGKNRM
P
R
S
R
R
R
A
QAYL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
70.28
22%
-5
- C4 -
1YVU
1
?
A:
[4-706]
EALLN
L
Y
R
I
E
Y
R
P
KDT
T
F
T
V
F
K
P
T
H
E
I
Q
KEK
L
N
K
V
R
W
R
V
F
L
Q
T
G
L
P
T
F
R
RED
E
F
W
C
A
G
KVEKDTLYLTLSNGE
I
V
E
L
K
R
V
G
E
E
E
F
R
G
FQN
E
R
E
C
Q
E
L
F
R
D
F
L
T
K
T
K
V
K
D
K
F
I
S
D
F
Y
K
K
FRDKI
T
V
Q
G
KN
R
K
I
A
L
I
P
E
V
N
E
K
V
L
K
S
EE
G
Y
F
L
LH
L
D
L
K
F
R
I
Q
P
F
E
T
L
Q
T
L
L
E
R
N
D
F
N
P
K
R
----------------------------
I
R
V
K
P
I
G
I
D
F
V
G
R
V
Q
D
V
F
K
A
K
E
K
G
E
E
F
F
R
L
C
M
E
R
S
T
H
K
S
S
K
K
A
W
E
E
L
L
K
---------
N
R
E
L
R
E
K
A
F
L
V
V
L
EK
G
Y
T
Y
P
ATI
L
K
P
V
L
T
YE
R
N
E
V
A
DIVRME
P
G
K
R
L
N
L
I
R
Y
I
L
R
R
Y
V
K
A
L
R
DYG
W
Y
I
S
PEEERAK
G
K
L
N
F
KD
T
V
L
D
AK
G
K
N
T
K
V
ITNL
R
K
F
L
E
L
CRPFVKKD
V
L
S
V
E
I
I
S
V
S
VW
R
K
E
E
F
L
K
E
L
I
N
F
L
K
N
K
G
I
K
L
K
I
K
G
K
S
L
I
L
A
QTRE
E
A
K
E
K
L
I
P
V
I
N
KIKDVD
L
V
I
V
F
L
EF
L
L
Y
D
F
V
K
R
E
L
L
K
K
MI
P
S
Q
V
I
L
N
R
T
L
K
N
EN
L
K
F
V
L
L
N
V
A
E
Q
V
L
A
K
T
GNIPYKLKEIEGKVD
A
F
V
G
I
D
I
S
R
I
T
R
DGKTV
N
A
V
A
F
T
K
I
F
N
SKGELV
R
Y
Y
L
T
S
Y
P
A
FGEK
L
T
E
K
A
I
G
D
V
F
S
L
L
E
K
L
GFKKG
S
K
I
V
V
H
R
DGRLY
R
D
E
V
A
A
F
K
K
Y
G
E
L
Y
GYS
L
E
L
L
E
I
I
KRN
N
P
R
F
F
S
NEKFIKG
Y
F
Y
K
L
S
EDSVILATYNQVYEGT
H
Q
P
I
K
V
R
KVYGELP
V
E
V
L
C
S
Q
I
L
S
L
T
L
M
N
YSSFQPIKLPATVHY
S
D
K
I
T
K
L
M
L
R
GI
E
P
I
K
K
E
G
DIMYWL
27
PsiBlast_CBE
62.28
31%
-58
- C6 -
3GM6
6
NIR_THIND
B:
[65-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.00
31%
-60
- C6 -
3F29
5
NIR_THIND
A:
[65-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
61.44
31%
-52
- C6 -
4L3Z
6
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
61.07
31%
-59
- C6 -
3RKH
5
NIR_THIND
B:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
61.07
31%
-48
- C6 -
3F29
3
NIR_THIND
B:
[65-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
61.07
31%
-61
- C6 -
4Q4U
8
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
60.94
31%
-57
- C6 -
3RKH
5
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
60.89
31%
-58
- C6 -
3LGQ
6
NIR_THIND
A:
[65-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
PsiBlast_CBE
60.79
31%
-52
* C6 *
3S7W
7
NIR_THIND
B:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
PsiBlast_CBE
60.79
31%
-53
- C6 -
4L38
3
NIR_THIND
B:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
60.78
31%
-58
- C6 -
4Q0T
6
NIR_THIND
A:
[64-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
60.77
31%
-58
- C6 -
4Q5C
7
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
60.76
31%
-58
- C6 -
3LGQ
7
NIR_THIND
B:
[65-102]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
60.73
31%
-62
- C6 -
4Q0T
6
NIR_THIND
B:
[64-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
60.59
31%
-53
- C6 -
3S7W
6
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
60.58
31%
-51
- C6 -
3SCE
6
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
60.54
31%
-55
- C6 -
3OWM
6
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
60.53
31%
-51
- C6 -
4L38
5
NIR_THIND
A:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
T
A
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
60.52
31%
-51
- C6 -
4L3Y
3
NIR_THIND
B:
[61-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
A
T
C
H
TA
Q
F
N
S
F
V
E
V
R
H
E
S
H
P
R
L
E
K
A
T
P
T
S
R
S
P
M
F
D
K
L
I
A
G
H
G
F
A
F
E
H
A
E
P
-
R
S
H
A
F
M
L
V
D
H
F
V
V
D
R
A
Y
G
G
R
F
Q
F
K
N
W
Q
K
V
T
D
G
M
G
A
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------