@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA1450: (2016-01-29 )
MDRTLSDRIFPPVLLLLALAWLLPWMPAHAEAPAEWVALPLSERVVDATHTLDEATRQRLVEKLEALERRRGAQIAVVMLPTTGTLDIEAFSDKLFQAWKLGRKAVDDGLLLVVAKDDRRMRIEVGYGLEGAVPDVVAGRIIRERMAPAFREGDYAGGIEAAVDELIRLVDGETLPAAASSGAPKVSLGQLPAEAWALLVAFIYGSLAGVLLSARALRWPWLLGGALLCWLLGTLAGASGEWMSVLLVAPLCMLVGGATFGALWTVRPAFYLVIGVLVYVALLGLAAHWFSAVSFIYGLLWPAGVLMLAVLCWSNYRLMRSLWRERRKSFHRRLWALLAAYLLLGLLSGGLDAPLVWLALLPFQLMLGLLVFGQVRLSGGGGGSSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASDSW
Atome Classification :
(20 SA)
.........10........20........30........40.........50.....-...60---.-.......70-........80...-.-....-90........100..-......110.......120.......130.......-140.......----150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.-......390.......400.......410.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MDRTLSDRI
F
P
P
V
L
L
L
L
A
L
A
W
LLPWMPAHAEAPA
E
W
V
ALP-
L
S
E
R
V
V
D
A
T
H
T
L
D
E
A
T
-
R
Q
R
L
V
---
E
-
K
L
E
A
L
E
R
RR-G
A
Q
I
A
V
V
M
LPTT
G
-
T
-
L
D
I
E
-
A
F
S
D
K
L
F
Q
A
W
K
-L
G
R
-
K
AVDD
G
L
L
L
V
V
AKDD
R
R
M
R
I
E
V
GYGLEGA
V
P
D
V
V
A
G
-
R
I
I
R
E
R
M
A
P
A
----FREGDYAG
G
I
E
A
A
V
D
E
L
I
R
LVDGETLPAAASSGAPKV
S
L
GQL
P
A
E
A
W
A
L
L
V
A
F
I
Y
G
S
L
A
G
V
L
L
S
A
RALR
W
P
W
L
L
G
G
A
L
L
C
W
L
L
G
T
LAGASG
E
W
M
S
V
L
L
V
A
P
L
C
M
L
VGGAT
F
G
A
L
W
TV
R
P
A
F
Y
L
V
I
G
V
L
V
Y
V
A
L
L
G
L
A
A
H
W
F
S
A
V
S
F
I
Y
G
L
L
W
P
A
G
V
L
M
L
A
V
L
C
WS
N
Y
R
L
M
R
S
L
W
R
E
R
R
K
S
F
H
R
R
L
W
A
L
L
A
A
Y
L
L
L
G
L
L
SGGL
D
A
P
L
V
W
L
A
L
L
P
F
Q
L
M
L
G
L
L
V
F
G
Q
V
R
L
SGGGGG-SSGSSGGGSSSSSSSSSGGFSGGGGSSGGGGASDSW
1
PsiBlast_PDB
89.87
39%
-122
- C4 -
2KW7
-
?
A:
[21-148]
---------------------------------------------
V
T
D
E
A
G
L
L
S
N
A
Q
-
E
E
V
M
N
---
G
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R
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R
A
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S
H
-
A
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E
F
A
V
V
T
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P
S
I
G
-
D
-
A
P
L
E
-
D
F
T
L
K
L
A
R
Q
W
G
-
V
G
N
-
E
K
N
N
N
G
L
L
L
V
L
V
L
D
Q
R
R
V
R
F
E
T
G
Y
G
L
E
G
Y
L
P
D
G
L
L
S
-
R
I
I
H
D
R
M
I
P
H
----
F
R
S
G
N
Y
A
E
G
L
S
E
G
V
L
A
V
Q
Q
V
L
D
G
S
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
89.48
38%
-108
- C4 -
2KW7
-
?
A:
[17-151]
-----------------------------------------
S
T
R
L
V
T
D
E
A
G
L
L
S
N
A
Q
-
E
E
V
M
N
---
G
-
R
L
R
A
I
R
S
S
H
-
A
V
E
F
A
V
V
T
L
P
S
I
G
-
D
-
A
P
L
E
-
D
F
T
L
K
L
A
R
Q
W
G
-
V
G
N
-
E
K
N
N
N
G
L
L
L
V
L
V
L
D
Q
R
R
V
R
F
E
T
G
Y
G
L
E
G
Y
L
P
D
G
L
L
S
-
R
I
I
H
D
R
M
I
P
H
----
F
R
S
G
N
Y
A
E
G
L
S
E
G
V
L
A
V
Q
Q
V
L
D
G
S
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
88.01
33%
-96
* C4 *
2KW7
-
?
A:
[1-157]
------------------------
M
R
V
Y
K
P
E
D
V
P
N
V
Q
L
A
D
-
S
T
R
L
V
T
D
E
A
G
L
L
S
N
A
Q
-
E
E
V
M
N
---
G
-
R
L
R
A
I
R
S
S
H
-
A
V
E
F
A
V
V
T
L
P
S
I
G
-
D
-
A
P
L
E
-
D
F
T
L
K
L
A
R
Q
W
G
-
V
G
N
-
E
K
N
N
N
G
L
L
L
V
L
V
L
D
Q
R
R
V
R
F
E
T
G
Y
G
L
E
G
Y
L
P
D
G
L
L
S
-
R
I
I
H
D
R
M
I
P
H
----
F
R
S
G
N
Y
A
E
G
L
S
E
G
V
L
A
V
Q
Q
V
L
D
G
S
L
E
H
H
H
H
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
82.06
19%
-90
- C4 -
2KPT
-
?
A:
[45-181]
---------------------------
V
L
A
E
S
P
-----
E
F
-
Y
Q
D
N
V
T
D
Y
T
G
Q
I
S
S
S
D
-
I
T
N
I
Q
---
A
-
A
I
D
D
V
K
A
S
E
-
Q
K
V
I
F
V
V
F
L
S
S
F
D
-
G
-
V
D
P
E
-
T
W
T
Q
Q
A
L
Q
A
N
G
--
G
-----
G
N
V
L
I
Y
A
L
A
P
E
E
R
Q
Y
G
I
Q
G
G
T
----
Q
W
T
D
A
E
L
D
-
A
A
N
N
A
-
A
F
Q
A
----
L
S
Q
E
D
W
A
G
S
A
L
A
L
A
E
S
V
G
S
S
S
S
S
S
S
G
S
S
S
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
80.53
15%
-86
- C4 -
2KPT
-
?
A:
[41-188]
----------------------------
T
E
T
Y
V
L
A
E
S
P
E
F
-
Y
Q
D
N
V
T
D
Y
T
G
Q
I
S
S
S
D
-
I
T
N
I
Q
---
A
-
A
I
D
D
V
K
A
S
E
-
Q
K
V
I
F
V
V
F
L
S
S
F
D
-
G
-
V
D
P
E
-
T
W
T
Q
Q
A
L
Q
A
N
G
-------
G
G
N
V
L
I
Y
A
L
A
P
E
E
R
Q
Y
G
I
Q
G
G
T
Q
W
T
D
A
E
L
D
------
A
A
N
N
A
A
F
Q
A
----
L
S
Q
E
D
W
A
G
S
A
L
A
L
A
E
S
V
G
S
S
S
S
S
S
S
G
S
S
S
L
E
H
H
H
H
H
H
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
73.26
17%
-88
- C4 -
3PVH
9
U603_ARATH
A:
[1-153]
----------------------------
S
A
S
E
F
N
I
L
N
D
G
P
P
K
E
T
Y
V
V
D
D
A
G
V
L
S
R
V
T
-
K
S
D
L
K
---
K
-
L
L
S
D
L
E
Y
R
K
-
K
L
R
L
N
F
I
T
V
R
K
L
T
-
S
K
A
D
A
F
-
E
Y
A
D
Q
V
L
E
K
W
Y
-
P
S
I
-
E
E
G
N
N
K
G
I
V
V
L
I
T
S
Q
K
E
G
A
I
T
G
G
P
A
F
I
E
A
V
G
E
N
I
L
D
-
A
T
V
S
E
N
L
P
V
L
----
A
T
D
E
K
Y
N
E
A
V
Y
S
S
A
K
R
L
V
A
A
I
D
G
Q
P
D
P
G
G
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
71.03
19%
-95
- C4 -
3PVH
9
U603_ARATH
A:
[12-152]
--------------------------------------
P
P
-
K
E
T
Y
V
V
D
D
A
G
V
L
S
R
V
T
-
K
S
D
L
K
---
K
-
L
L
S
D
L
E
Y
R
K
-
K
L
R
L
N
F
I
T
V
R
K
L
T
S
K
-
A
D
A
F
-
E
Y
A
D
Q
V
L
E
K
W
Y
-
P
S
I
E
E
G
N
N
K
G
I
V
V
L
I
T
S
-
Q
K
E
G
A
I
T
G
G
P
----
A
F
I
E
A
V
G
E
-
N
I
L
D
A
T
V
S
E
N
L
P
V
L
A
T
D
E
K
Y
N
E
A
V
Y
S
S
A
K
R
L
V
A
A
I
D
G
Q
P
D
P
G
G
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
56.54
25%
0
- C3 -
1IOK
-
CH60_PARDE
A:
[342-464]
-----------------------------------------
I
E
A
R
V
S
Q
I
R
Q
Q
I
E
E
T
T
-
S
D
Y
D
R
---
E
-
K
L
Q
E
R
V
A
K
L
-
A
G
G
V
A
V
I
R
V
G
G
M
T
-
E
-
I
E
V
K
-
E
R
K
D
R
V
D
D
A
L
N
-
A
T
R
-
A
A
V
Q
E
G
-
I
V
V
G
G
G
V
A
L
V
Q
G
A
K
V
L
E
G
L
S
G
A
N
S
D
Q
D
A
G
I
A
I
I
R
R
A
L
E
A
P
----
M
R
Q
I
A
E
N
A
G
V
D
G
A
V
V
A
G
K
V
R
E
S
S
D
K
A
F
G
F
N
A
Q
T
E
E
Y
G
D
M
F
K
F
G
V
I
D
P
A
K
V
V
R
T
A
L
E
D
A
A
S
V
A
G
L
L
I
T
T
E
A
M
I
A
E
K
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
45.16
17%
39
- C4 -
2KUB
-
A:
[128-208]
----------------------------
E
N
L
D
K
M
I
S
E
A
E
V
-
L
N
D
M
A
A
R
K
L
I
T
L
D
A
E
Q
-
Q
L
E
L
M
---
K
-
S
L
V
A
T
Q
S
Q
L
-
E
A
T
K
N
L
I
G
D
P
N
A
T
-
V
-
A
D
L
Q
I
A
Y
T
T
L
G
N
N
T
Q
A
-
L
G
N
-
E
L
I
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
43.81
36%
230
- C3 -
3ZG1
5
CNRR_CUPMC
A:
[43-70]
-------------------------------------------
E
I
L
H
E
A
V
P
-
L
D
A
N
E
-
R
E
I
L
E
---
L
-
K
E
D
A
F
A
Q
R
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
41.43
22%
47
- C4 -
2GV5
-
SFI1_YEAST
C:
[638-710]
--------------------------------------
G
P
-
L
G
S
K
L
N
D
I
L
H
V
Y
E
K
S
K
-
E
R
E
L
Q
---
S
-
Q
L
F
N
A
W
R
N
R
-
F
C
F
Y
T
-------
E
-
E
-
C
N
I
Q
-
A
I
S
K
R
N
Y
Q
L
E
K
M
V
L
K
-
K
F
R
E
R
L
L
E
I
V
K
S
E
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
38.97
19%
45
- C4 -
1SKV
-
D63_SSV1
A:
[2-65]
----------------------------------------------------
S
K
E
V
L
-
E
K
E
L
F
---
E
M
L
D
E
D
V
R
E
L
L
-
S
L
I
H
E
I
K
I
D
R
I
T
G
-
N
-
M
D
K
Q
-
K
L
G
K
A
Y
F
Q
V
Q
K
-
I
E
A
-
E
L
Y
Q
---
L
I
K
V
S
H
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
38.06
27%
2
- C3 -
2L69
-
?
A:
[35-90]
----------------------------------------------------------
P
Q
E
L
K
---
D
-
S
I
E
E
L
V
K
K
Y
-
N
A
T
I
V
V
V
V
V
D
D
K
---------
E
W
A
E
K
A
I
R
F
V
K
S
L
G
-----
A
Q
V
L
I
I
I
Y
D
Q
D
Q
N
R
L
E
E
F
S
R
E
V
R
R
R
G
F
E
V
R
T
V
T
-
S
P
D
D
F
K
K
S
L
E
----
R
L
I
R
E
V
G
S
L
E
H
H
H
H
H
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
38.03
54%
318
- C3 -
3OZB
-
MTIP_PSEAE
A:
[141-162]
----------------------------------------------
I
D
F
S
H
P
Y
D
E
P
L
-
R
Q
R
L
I
---
E
-
A
L
R
A
L
G
L
A
H
-
S
S
H
G
V
Y
A
C
T
Q
G
P
R
-
L
-
E
T
V
A
-
E
I
A
R
L
E
R
D
G
N
D
-
I
V
G
-
M
T
G
M
P
E
A
A
L
A
R
E
L
D
L
P
Y
A
C
L
A
L
V
V
N
P
A
A
G
K
S
A
G
I
I
T
-
M
A
E
I
E
Q
A
L
H
D
----
G
I
G
K
V
R
E
V
L
A
R
V
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
36.68
4%
7
- C3 -
3C9H
1
?
A:
[45-69]
-----------------------------------------------------------
P
L
A
T
---
P
-
M
I
E
G
F
Q
K
A
N
P
D
I
A
V
H
Y
E
D
M
L
T
G
E
-
I
-
Y
D
R
I
-
V
K
E
T
D
A
G
K
K
T
A
-
D
F
A
-
F
S
S
A
M
D
L
Q
V
K
L
S
N
D
G
Y
A
Q
R
S
D
L
A
M
S
A
R
W
P
A
W
A
N
W
R
N
-
T
A
Y
A
L
T
F
E
P
A
----
V
F
V
Y
H
K
P
S
F
T
T
E
K
P
P
A
T
R
A
E
F
V
D
Y
L
E
R
H
A
K
E
V
H
G
R
I
A
T
Y
D
I
E
R
G
V
G
F
L
F
M
S
R
D
Q
E
Q
F
G
D
I
W
S
V
I
K
A
M
G
A
A
G
V
K
V
Y
S
T
S
S
A
I
L
E
R
V
S
D
G
R
F
V
L
G
Y
N
I
L
G
S
Y
A
A
D
W
A
S
R
H
P
D
V
G
I
V
L
P
K
D
Y
T
V
V
M
S
R
I
G
L
V
P
E
A
A
A
N
P
E
L
G
R
R
Y
L
E
F
F
M
S
K
E
G
Q
T
I
M
A
R
Q
L
Q
I
P
A
V
S
P
E
V
A
G
E
N
T
A
N
T
M
Q
A
I
H
G
A
Q
L
R
P
V
P
V
S
P
G
L
M
V
Y
L
D
Q
V
K
R
S
R
L
I
E
R
W
N
E
A
L
R
S
-------------------------------------------------------
4
PsiBlast_PDB
36.65
41%
172
- C5 -
2DMR
1
DSTOR_RHOCA
A:
[385-435]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
G
Q
I
G
L
P
G
G
G
F
G
L
S
Y
H
Y
S
G
G
G
T
P
S
T
S
G
P
A
L
A
G
I
T
D
G
G
A
A
T
K
G
-------
35
Fugue
35.98
11%
130
- C4 -
3LT7
-
YADA1_YEREN
A:
[-7-46]
----------------------------
T
A
N
S
Y
T
D
V
T
V
S
N
-
S
T
K
K
A
I
R
E
S
N
Q
Y
T
D
H
K
-
F
H
Q
L
E
---
N
-
R
L
D
K
L
E
K
R
L
-
L
K
L
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
35.65
50%
4
- C3 -
2WY1
-
ANGT_RAT
A:
[43-76]
-------------------------------------------------
T
S
P
V
D
E
K
T
L
R
D
K
L
V
L
A
T
E
-
K
L
E
A
E
D
R
Q
R
-
A
A
Q
V
A
M
I
A
N
F
M
G
F
-
R
-
M
Y
K
M
-
L
S
E
A
R
V
A
S
G
A
V
-
L
S
P
-
P
A
L
F
G
T
L
V
S
F
Y
L
G
S
L
D
P
T
A
S
Q
L
Q
V
L
L
G
V
P
V
K
E
G
D
C
T
-
S
R
L
D
G
H
K
V
L
T
----
A
L
Q
A
V
Q
G
L
L
V
T
P
L
L
Q
S
T
V
V
G
L
F
T
A
P
G
L
R
L
K
Q
P
F
V
E
S
L
G
P
F
T
P
A
I
F
P
R
S
L
D
L
S
T
D
P
V
L
A
A
Q
K
I
N
R
F
V
Q
A
V
T
G
W
K
M
N
L
P
L
E
G
V
S
T
D
S
T
L
F
F
N
T
Y
V
H
F
Q
G
K
M
R
G
F
S
Q
L
T
G
L
H
E
F
W
V
D
N
S
T
S
V
S
V
P
M
L
S
G
T
G
N
F
Q
H
W
S
D
A
Q
N
N
F
S
V
T
R
V
P
L
G
E
S
V
T
L
L
L
I
Q
P
Q
C
A
S
D
L
D
R
V
E
V
L
V
F
Q
H
D
F
L
T
W
I
K
N
P
P
P
R
A
I
R
L
T
L
P
Q
L
E
I
R
G
S
Y
N
L
Q
D
L
L
A
Q
A
K
L
S
T
L
L
G
A
E
A
N
L
G
K
M
G
D
T
N
P
R
V
G
E
-
V
L
N
S
I
L
L
E
L
Q
A
G
E
E
V
L
D
V
T
L
S
S
P
F
L
F
A
I
Y
E
R
D
S
G
A
L
34
Fugue
35.09
12%
30
- C4 -
1X79
3
RABE1_HUMAN
B:
[3-92]
------------------------------
E
T
R
D
Q
V
K
K
L
Q
-
L
M
L
R
Q
A
N
D
Q
L
E
K
T
M
K
D
-
K
Q
E
L
E
---
D
-
F
I
K
Q
S
S
E
D
S
-
S
H
Q
I
S
A
L
V
L
R
A
Q
A
-
S
-
E
I
L
L
-
E
E
L
Q
Q
G
L
S
Q
A
K
-
R
D
V
-
Q
E
Q
M
A
V
L
M
Q
S
R
E
Q
V
S
E
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
35.09
41%
161
* C5 *
1E60
2
DSTOR_RHOCA
A:
[385-427]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
G
Q
I
G
L
P
G
G
G
F
G
L
S
Y
H
Y
S
G
G
G
T
P
S
T
S
G
P
A
L
A
G
I
T
D
G
G
A
A
T
K
G
-------