@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA2047: (2016-02-03 )
MPVAATRASLGKVSPASPRMSENTPLLSVDLPAELRQRQSELAQSLLRHCPRDGIYGTAVEPLALIRADGPTLPARGMHKPALCIIAQGRKEVQLAEERYIYDPLHYLVVSVTLPLAGQVIDASPDAPYLCVRLDIDPAEITQLISDAGPMEVASRRGDRGLYVDRIDASLLDAVLRLIHLLDSPRDIPMLAPLILREIFYRLLRSGQGQRLHEIAIADSQAHRITRAIDWINQNYGKPLRIEQLAQVVNLSPSTLHHRFKAVTAMSPLQYQKQLRLQEARRLIFSEGLEVAAAGYRVGYESPSQFSREYSRLFGAPPLRDLARARNTA
Atome Classification :
(20 SA)
-----------------.........10........20........30........40........50.....---------------...60........70........80...--------.....90......--..------100...--....110.......120.......130.......140.......150.......160.......170.....-..180.......190.......200.......210.......220--------.......230....-..-.-240.......250.......260.......270.......---280...--.--...290.....---..300.......310.......320.......-------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------MPVAATRASLGKVSPASPRMSENT
P
L
L
S
VDL
P
A
E
L
R
Q
R
Q
S
E
L
A
Q
S
L
L
R
HCPRDGIY---------------GTAV
E
P
L
A
L
I
RADGPTLPARGMHK
P
A
L
C
--------
I
I
AQGRK
E
V
QL
A
E
--ER------YIY
D
P
L
--
H
Y
L
V
V
S
V
TLPLA
G
Q
VIDASPDA
P
Y
L
C
V
R
L
DI
D
P
A
E
I
T
Q
L
I
SDAG
P
M
E
V
A
SRRGDR
G
L
Y
V
D
RI
D
A
S
L
L
D
A
V
L
R
-
L
I
H
L
LDSPRDI
P
M
L
A
P
L
I
L
R
E
I
F
Y
R
L
L
RSGQG
Q
R
L
H
E
I
A
IADS
Q
A
--------
H
R
I
T
R
A
I
D
W
I
N
QNY-GK-P-L
R
I
E
Q
L
A
Q
V
VNL
S
P
S
T
L
H
H
R
F
K
A
V
TAM
S
P
L
Q
Y
Q
K
Q
L
R
L
Q
E
---
A
R
R
L
I
F
--S--EG
L
E
V
A
AAGYR---VGYE
S
P
S
Q
F
S
R
E
Y
S
R
LFGAP
P
L
R
D
L
A
R
ARNTA-------
47
Fugue
84.59
13%
-47
* C3 *
4FE7
1
XYLR_ECOLI
A:
[21-409]
MFT
K
R
H
R
I
T
L
L
F
N
ANK
A
Y
D
R
Q
V
V
E
G
V
G
E
Y
L
Q
A
S
Q
S
E
W
D
I
F
I
E
E
F
R
W
L
G
D
G
V
I
A
D
F
D
D
K
Q
I
E
Q
A
L
A
D
V
D
V
P
I
V
G
V
G
G
S
Y
HLAESYPP
V
H
Y
I
A
T
D
N
Y
A
L
V
E
S
A
F
L
H
L
K
E
K
G
V
N
R
F
A
F
Y
G
L
P
ESSGK
R
W
A
T
E
R
E
Y
A
F
R
Q
L
--
V
A
EEK
Y
R
G
V
V
Y
Q
G
L
ET
A
P
E
N
W
Q
H
A
Q
N
R
L
A
D
W
L
Q
T
L
P
P
Q
T
G
I
I
A
V
T
D
A
R
A
R
H
I
L
Q
V
C
E
H
L
H
I
P
-
V
P
E
K
L
C
V
I
G
I
D
N
E
E
L
T
R
Y
L
S
R
--
V
A
-
L
S
S
V
A
Q
G
A
R
Q
M
G
Y
Q
A
A
K
L
L
H
R
L
L
D
K
E
E
M
P
L
Q
R
I
L
V
P
P
V
R
V
I
E
R
R
S
TDYRSLTD
P
A
V
I
Q
A
M
H
Y
I
R
N
H
A
-
C
K
-
G
-
I
K
V
D
Q
V
L
D
A
V
G
I
S
R
S
N
L
E
K
R
F
K
E
E
V
G
E
T
I
H
A
M
I
H
A
E
K
L
E
K
---
A
R
S
L
L
I
--
S
--
T
T
L
S
I
N
E
I
S
Q
M
---
C
G
Y
P
S
L
Q
Y
F
Y
S
V
F
K
K
A
Y
D
T
T
P
K
E
Y
R
D
V
N
S
E
---------
41
Fugue
78.26
29%
-59
- C2 -
3MN2
2
?
A:
[1-108]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--------
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
---
A
H
N
L
L
S
DG
A
--
T
P
T
T
V
T
A
A
A
L
S
---
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
23
HHSearch
77.56
29%
-56
- C2 -
3MN2
2
?
A:
[2-107]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
V
R
Q
V
E
E
Y
I
E
A
N
W
-
M
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
---
A
H
N
L
L
S
--
D
GA
T
P
T
T
V
T
A
A
A
L
S
---
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
26
HHSearch
73.96
29%
-46
- C2 -
2K9S
-
A:
[2-106]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
-
A
D
S
N
-
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
---
A
K
L
L
L
S
--
T
--
T
R
M
P
I
A
T
V
G
R
N
---
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
E
----------
48
Fugue
72.62
15%
-55
- C3 -
2ZCU
1
QOR2_ECOLI
A:
[1-283]
------------------
M
I
A
I
T
G
A
T
G
Q
L
G
H
Y
V
I
E
S
L
M
K
T
V
P
A
S
Q
I
V
A
I
V
R
N
P
A
K
A
Q
A
L
A
A
Q
G
I
-----
T
V
R
Q
---------------
A
D
Y
G
D
E
A
A
L
T
S
A
L
Q
G
V
-------
E
K
L
L
L
--------
I
S
P
Q
H
R
N
V
I
N
A
A
K
--
A
A
------
G
V
K
-----
F
I
A
Y
T
S
L
------------
L
H
A
D
T
S
P
L
G
L
A
D
E
H
I
E
T
E
K
M
L
A
D
S
G
I
V
Y
T
L
L
R
N
G
---
W
Y
S
E
N
Y
L
A
S
A
P
A
A
L
E
H
G
V
F
I
G
A
A
G
D
G
K
I
A
S
A
T
R
A
D
Y
A
A
A
A
A
R
V
I
S
E
-
A
G
H
E
G
K
V
Y
E
L
A
G
D
S
A
--------
W
T
L
T
Q
L
A
A
E
L
T
K
Q
S
-
G
K
-
Q
-
V
------------------
T
Y
Q
N
L
S
E
A
D
F
A
A
A
L
K
S
V
G
L
P
D
---
G
L
A
D
M
L
--
A
--
D
S
D
V
G
A
S
K
G
---------
G
L
F
D
D
S
K
T
L
S
K
L
I
G
H
P
T
T
T
L
A
E
S
V
S
H
L
F
N------
1
PsiBlast_PDB
72.30
29%
-50
- C2 -
2K9S
-
A:
[3-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
R
V
R
E
A
C
Q
Y
I
S
D
H
L
-
A
D
-
S
N
F
D
I
A
S
V
A
Q
H
V
C
L
S
P
S
R
L
S
H
L
F
R
Q
Q
L
G
I
S
V
L
S
W
R
E
D
Q
R
I
S
Q
---
A
K
L
L
L
S
--
T
--
T
R
M
P
I
A
T
V
G
R
N
---
V
G
F
D
D
Q
L
Y
F
S
R
V
F
K
K
C
T
G
A
S
P
S
E
F
R
A
G
C
E
----------
25
HHSearch
71.73
26%
-52
- C2 -
3OIO
2
?
A:
[4-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
Q
--------
P
K
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
-
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
---
A
R
Q
L
L
Q
--
Q
--
T
S
K
S
I
V
Q
I
G
L
A
---
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
P
G
-------
29
HHSearch
71.47
19%
-39
- C2 -
3LSG
1
?
A:
[2-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
K
E
L
I
Q
N
I
I
E
E
S
Y
T
D
S
-
Q
-
F
T
L
S
V
L
S
E
K
L
D
L
S
S
G
Y
L
S
I
M
F
K
K
N
F
G
I
P
F
Q
D
Y
L
L
Q
K
R
M
E
K
---
A
K
L
L
L
L
--
T
--
T
E
L
K
N
Y
E
I
A
E
Q
---
V
G
F
E
D
V
N
Y
F
I
T
K
F
K
K
Y
Y
Q
I
T
P
K
Q
Y
R
E
-------------
4
PsiBlast_PDB
71.43
27%
-54
- C2 -
3OIO
2
?
A:
[8-108]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
T
E
A
V
S
L
M
E
A
N
I
-
E
E
-
P
-
L
S
T
D
D
I
A
Y
Y
V
G
V
S
R
R
Q
L
E
R
L
F
K
Q
Y
L
G
T
V
P
S
K
Y
Y
L
E
L
R
L
N
R
---
A
R
Q
L
L
Q
--
Q
--
T
S
K
S
I
V
Q
I
G
L
A
---
C
G
F
S
S
G
P
H
F
S
S
T
Y
R
N
H
F
N
I
T
P
R
E
E
R
A
Q
R
A
Q
P
G
-------
2
PsiBlast_PDB
70.84
29%
-27
- C2 -
3MN2
2
?
A:
[9-107]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
Y
I
E
A
N
W
-
M
R
-
P
-
I
T
I
E
K
L
T
A
L
T
G
I
S
S
R
G
I
F
K
A
F
Q
R
S
R
G
Y
S
P
M
A
F
A
K
R
V
R
L
Q
H
---
A
H
N
L
L
---
S
--
D
G
A
T
P
T
T
V
T
A
A
A
L
S
C
G
F
S
N
L
G
H
F
A
R
D
Y
R
D
M
F
G
E
K
P
S
E
T
L
Q
R
A
R
P
---------
21
HHSearch
70.55
9%
-85
- C2 -
3GBG
1
TCPN_VIBC3
A:
[23-272]
---------------------------------------------------------------------------------------------------------
N
N
L
Y
I
N
D
Y
K
M
F
--------
W
I
D
S
G
I
A
K
L
I
D
K
N
CL
V
S
------
Y
E
I
N
S
S
--
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
-
S
D
E
N
I
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
I
L
G
--------
N
K
D
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
-
V
V
N
G
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
E
K
K
Y
N
S
------
I
F
I
T
D
D
L
--------
D
A
M
E
K
I
S
C
L
V
K
S
D
I
-
T
R
-
N
-
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
-
S
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
---
S
I
S
L
M
K
--
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
---
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
--------
43
Fugue
69.85
23%
-20
- C2 -
1BL0
2
MARA_ECOLI
A:
[9-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
--------
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
---
I
A
Q
K
L
K
--
E
--
S
N
E
P
I
L
Y
L
A
E
R
---
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
SRFLHPL
44
Fugue
67.88
8%
-73
- C2 -
3GBG
1
TCPN_VIBC3
A:
[4-273]
-------------------------------------
K
K
S
F
Q
T
N
V
Y
R
M
S
K
F
D
T
Y
I
F
N
N
L
Y
I
N
D
Y
-------------------------------------------------
K
M
F
--------
W
I
D
S
G
I
A
K
L
I
D
K
N
--
C
L
------
V
S
Y
E
I
N
--
S
S
S
I
I
L
L
K
K
N
S
I
Q
R
F
S
L
T
S
L
S
D
E
N
I
N
V
S
V
I
T
I
S
D
S
F
I
R
S
L
K
S
Y
-------
I
L
G
N
K
D
L
L
L
W
N
C
E
H
N
D
I
A
V
L
S
E
-
V
V
N
G
F
R
E
I
N
Y
S
D
E
F
L
K
V
F
F
S
G
F
F
S
K
V
------
E
K
K
Y
N
S
I
F
I
T
D
D
L
--------
D
A
M
E
K
I
S
C
L
V
K
S
D
I
-
T
R
-
N
-
W
R
W
A
D
I
C
G
E
L
R
T
N
R
M
I
L
K
K
E
L
E
S
-
R
G
V
K
F
R
E
L
I
N
S
I
R
I
S
Y
---
S
I
S
L
M
K
--
T
--
G
E
F
K
I
K
Q
I
A
Y
Q
---
S
G
F
A
S
V
S
Y
F
S
T
V
F
K
S
T
M
N
V
A
P
S
E
Y
L
F
M
L
T
G
V
--------
22
HHSearch
67.75
24%
-46
- C2 -
3W6V
2
?
A:
[37-142]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--------
D
P
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
-
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
---
A
Q
R
L
L
E
--
T
--
S
D
Y
S
V
D
E
V
A
G
R
---
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
R
R
-------
3
PsiBlast_PDB
64.97
25%
-54
- C2 -
3W6V
2
?
A:
[40-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
V
V
A
W
A
L
E
H
L
-
H
E
-
Q
-
F
D
V
E
T
L
A
A
R
A
Y
M
S
R
R
T
F
D
R
R
F
R
S
L
T
G
S
A
P
L
Q
W
L
I
T
Q
R
V
L
Q
---
A
Q
R
L
L
E
--
T
--
S
D
Y
S
V
D
E
V
A
G
R
---
C
G
F
R
S
P
V
A
L
R
G
H
F
R
R
Q
L
G
S
S
P
A
A
Y
R
A
A
Y
R
A
R
R
-------
24
HHSearch
64.51
24%
-19
- C2 -
1BL0
2
MARA_ECOLI
A:
[9-115]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
--------
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
---
I
A
Q
K
L
K
--
E
--
S
N
E
P
I
L
Y
L
A
E
R
---
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
-------
27
HHSearch
63.61
14%
-41
- C2 -
3OOU
1
?
A:
[4-107]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--------
P
I
I
Q
N
V
L
S
Y
I
T
E
H
F
-
S
E
-
G
-
M
S
L
K
T
L
G
N
D
F
H
I
N
A
V
Y
L
G
Q
L
F
Q
K
E
M
G
E
H
F
T
D
Y
L
N
R
Y
R
V
N
Y
---
A
K
E
E
L
L
--
Q
--
T
K
D
N
L
T
I
I
A
G
K
---
S
G
Y
T
D
M
A
Y
F
Y
R
Q
F
K
K
H
T
G
E
T
P
N
R
Y
R
K
I
H
Q
----------
5
PsiBlast_PDB
62.85
26%
-21
- C2 -
1BL0
2
MARA_ECOLI
A:
[9-106]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
A
--------
I
T
I
H
S
I
L
D
W
I
E
D
N
L
-
E
S
-
P
-
L
S
L
E
K
V
S
E
R
S
G
Y
S
K
W
H
L
Q
R
M
F
K
K
E
T
G
H
S
L
G
Q
Y
I
R
S
R
K
M
T
E
---
I
A
Q
K
L
K
--
E
--
S
N
E
P
I
L
Y
L
A
E
R
---
Y
G
F
E
S
Q
Q
T
L
T
R
T
F
K
N
Y
F
D
V
P
P
H
K
Y
R
M
T
N
M
Q
G
E
-------
8
PsiBlast_PDB
62.54
27%
-25
- C2 -
1D5Y
2
ROB_ECOLI
A:
[1-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
--------
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
S
A
V
A
L
R
L
T
A
--
R
--
P
I
L
D
I
A
L
Q
-
Y
R
-----
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
S
A
-------
30
HHSearch
60.97
18%
-28
- C2 -
1D5Y
2
ROB_ECOLI
A:
[3-105]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
I
R
D
L
L
I
W
L
E
G
H
L
-
D
Q
-
P
-
L
S
L
D
N
V
A
A
K
A
G
Y
S
K
W
H
L
Q
R
M
F
K
D
V
T
G
H
A
I
G
A
Y
I
R
A
R
R
L
S
K
---
S
A
V
A
L
R
--
L
--
T
A
R
P
I
L
D
I
A
L
Q
---
Y
R
F
D
S
Q
Q
T
F
T
R
A
F
K
K
Q
F
A
Q
T
P
A
L
Y
R
R
S
P
E
W
S
A
-------