@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3413: (2016-02-16 )
MAVEVVYRSSRDQERLFMDKAEADRYDKMLELAETLAEVLQKAVPSLKEEQVEELGIFMAKNRDAFARAFKNQPDALNELFEENAADE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........-30.--.......40...-----.....50........60........70......-..80.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
E
V
V
Y
RSSR
D
Q
E
R
L
F
M
D
K
A
E
A
D
R
Y
D
K
M
-
L
E
L
--
A
E
T
L
A
E
V
L
Q
K
A
V
-----
P
S
L
K
E
E
Q
V
E
E
L
G
I
FMAKN
R
D
A
F
A
R
A
FKNQ
P
D
A
L
-
N
E
L
F
E
ENAADE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
92.34
54%
-83
- C2 -
3ERM
-
?
A:
[21-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
R
K
L
A
D
A
H
D
Q
M
-
L
E
L
--
A
E
L
L
T
D
V
L
I
K
N
V
-----
P
G
L
S
E
K
H
A
E
D
A
S
I
Y
M
A
K
N
R
A
V
F
A
A
A
F
K
N
N
A
T
A
L
-
S
E
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_CBE
92.13
54%
-92
- C2 -
3ERM
1
?
B:
[22-85]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
K
L
A
D
A
H
D
Q
M
-
L
E
L
--
A
E
L
L
T
D
V
L
I
K
N
V
-----
P
G
L
S
E
K
H
A
E
D
A
S
I
Y
M
A
K
N
R
A
V
F
A
A
A
F
K
N
N
A
T
A
L
-
S
E
L
S
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
90.42
54%
-81
- C2 -
3ERM
-
?
A:
[21-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
R
K
L
A
D
A
H
D
Q
M
-
L
E
L
--
A
E
L
L
T
D
V
L
I
K
N
V
-----
P
G
L
S
E
K
H
A
E
D
A
S
I
Y
M
A
K
N
R
A
V
F
A
A
A
F
K
N
N
A
T
A
L
-
S
E
L
S
E
P
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
86.76
52%
-75
- C2 -
3ERM
-
?
A:
[21-87]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
D
R
K
L
A
D
A
H
D
Q
-
M
L
E
L
--
A
E
L
L
T
D
V
L
I
K
N
V
-----
P
G
L
S
E
K
H
A
E
D
A
S
I
Y
M
A
K
N
R
A
V
F
A
A
A
F
K
N
N
A
T
A
L
-
S
E
L
S
E
P
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
59.93
17%
-70
- C2 -
2LM4
-
SDHF2_YEAST
A:
[33-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
I
-
L
E
T
--
D
L
L
L
S
G
F
A
A
K
Y
L
-----
K
K
M
N
E
E
E
L
E
E
Y
D
S
L
L
N
E
L
D
W
D
I
Y
Y
W
A
T
K
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.79
36%
-114
- C2 -
2IXN
-
PTPA2_YEAST
A:
[87-119]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
Y
D
----
E
V
--
S
R
N
S
R
K
I
L
R
S
E
F
-----
P
S
L
T
D
E
Q
L
E
Q
L
S
I
Y
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
57.53
14%
-12
- C2 -
4K92
-
CLAP1_HUMAN
A:
[17-259]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AV
D
E
E
D
F
I
K
A
F
DD
V
P
V
V
Q
I
YS
S
R
D
L
E
E
S
I
N
K
I
R
E
I
L
S
D
D
K
H
D
W
E
Q
R
V
N
A
L
K
K
I
R
S
L
L
L
A
G
A
A
E
Y
D
N
F
-
F
Q
H
--
L
R
L
L
D
G
A
F
K
L
S
A
-----
K
D
L
R
S
Q
V
V
R
E
A
C
I
T
L
G
H
L
S
S
V
L
G
N
K
F
D
H
G
A
E
A
I
M
P
T
I
F
N
L
I
P
N
S
A
K
I
M
A
T
S
G
V
V
A
V
R
L
I
I
R
HTHIPRL
I
P
V
I
T
S
N
CTSKS
V
A
V
R
R
R
C
F
E
F
L
D
L
L
L
Q
E
WQTHSLERH
I
S
V
L
A
E
T
I
K
K
G
I
H
DAD
S
E
A
R
I
E
A
R
K
C
Y
W
G
F
H
S
H
F
S
R
E
A
E
H
L
Y
H
T
LE
S
S
Y
Q
K
A
L
Q
S-------------------------------------------------------
15
PsiBlast_PDB
56.84
30%
-57
- C2 -
2QNA
-
IMB1_HUMAN
A:
[607-655]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
53.69
30%
-51
- C2 -
1QGK
-
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
53.68
30%
-38
- C2 -
1QGR
1
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
52.91
30%
-45
- C2 -
3W5K
-
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
52.71
19%
-75
* C2 *
1F46
-
ZIPA_ECOLI
A:
[92-132]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
E
L
Q
L
F
K
L
M
-
L
Q
S
--
A
Q
H
I
A
D
E
V
G
G
V
V
L
D
DQR
R
M
M
T
P
Q
K
L
R
E
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
51.65
30%
-59
- C2 -
2P8Q
-
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
50.83
30%
-35
- C2 -
1UKL
-
IMB1_MOUSE
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
F
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
49.24
30%
-52
- C2 -
2Q5D
-
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
-----
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
47.41
17%
-41
- C1 -
2BON
1
YEGS_ECOLI
A:
[30-326]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
A
S
L
L
ILNGKSTDN
L
P
L
R
E
A
I
M
L
L
R
E
E
G
M
T
I
H
V
R
V
T
W
E
K
G
D
A
A
R
Y
V
E
E
A
R
K
F
G
V
A
T
V
-
I
A
G
GG
D
G
T
I
N
E
V
S
T
A
L
I
-----
Q
C
E
G
D
D
I
P
-
A
L
G
I
L
P
L
G
T
A
N
D
F
A
T
S
V
-
G
I
P
E
A
L
-
D
K
A
L
K
L
A
I
A
G
D
A
I
A
I
D
M
A
Q
V
NKQTCFI
N
M
A
T
G
G
F
G
T
R
IAL
G
S
V
S
Y
I
I
H
GLMRMD
T
L
Q
P
D
R
C
E
I
R
G
EN
F
H
W
Q
G
D
AL
V
I
G
I
G
NGRQAGGGQQLCPNALINDG
L
L
Q
L
R
I
F
T
G
DEIL
P
A
L
V
S
T
L
K
SDEDNPN
I
I
E
G
A
S
S
W
F
D
I
Q
A
P
H
D
I
T
F
N
L
DG
E
P
L
S
G
Q
N
F
H
I
E
I
LPAA
L
R
C
R
L
P
PDCPLLRST
25
HHSearch
46.04
12%
-72
- C2 -
1X6I
-
CPTB_ECOLI
A:
[14-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
G
M
-
R
E
L
--
D
I
S
I
M
P
F
F
E
H
E
Y
-----
D
S
L
S
D
D
E
K
R
I
F
I
R
L
L
E
C
D
D
P
D
L
F
N
W
L
M
N
H
G
K
P
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
44.14
11%
-62
- C2 -
1PUZ
-
?
A:
[17-69]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
G
L
-
L
E
L
--
D
L
I
F
G
R
F
M
E
K
E
F
-----
E
H
L
S
D
K
E
L
S
E
F
S
E
I
L
E
F
Q
D
Q
E
L
L
A
L
I
N
G
H
S
E
T
D
-
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
42.26
30%
-22
- C2 -
3LWW
-
IMB1_HUMAN
A:
[732-780]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
V
V
L
N
T
L
Q
Q
A
S
Q
A
Q
V
D
K
S
D
Y
D
M
V
D
Y
L
-
N
E
L
--
R
E
S
C
L
E
A
Y
T
G
I
V
-----
Q
G
L
K
G
D
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
41.27
15%
-26
- C2 -
1KVK
2
KIME_RAT
A:
[1-394]
MLS
E
V
L
L
V
S
A
P
G
K
V
I
LHG
E
H
A
V
V
H
G
K
V
A
L
A
V
A
L
NL
R
T
F
L
V
L
R
P
Q
SNG
K
V
S
L
N
L
PNVG
I
K
Q
V
W
D
V
A
T
L
Q
L
LDTE
K
L
K
K
V
A
G
L
P
R
D
C
V
G
NE
G
L
S
L
L
A
F
L
Y
L
Y
L
A
I
CRKQR
T
L
P
S
L
D
I
M
V
W
S
ELPPGAGLG
S
S
A
A
Y
S
V
C
V
A
A
A
L
L
T
A
C
EEVTNPLKDRGS
I
G
S
W
P
E
E
D
L
K
S
I
N
K
W
A
Y
E
G
E
R
V
I
HGNPSG
V
D
N
S
V
S
T
WG
G
A
L
R
Y
Q
QG
K
M
S
S
LKRL
P
A
L
Q
I
L
L
T
N
TK
V
P
R
S
T
K
A
L
V
A
G
V
R
S
R
L
I
K
--
F
P
E
I
M
A
P
L
L
T
S
I
-
D
A
I
--
S
L
E
C
E
R
V
L
G
E
M
A
-----
A
A
P
V
P
E
Q
Y
L
V
L
E
E
L
M
D
M
N
Q
H
H
L
N
A
L
-
G
V
G
H
A
S
L
-
D
Q
L
C
Q
V
T
A
A
H
G
L
H
S
K
L
T
G
AGGG
G
C
G
I
T
L
L
K
PGLE
R
A
K
V
E
A
A
K
Q
A
L
T
G
C
G
F
D
C
W
ETSIGAP
G
V
S
M
H
S
ATSIE
D
P
V
R
Q
A
L
G-------------------------------------------------------------------------------------------------------