@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : PF01471_MMP8_R: (2014-09-24 )
MLHLKTLPFLFFFHTQLATALPVPPEHLEEKNMKTAENYLRKFYHLPSNQFRSARNATMIAEKLKEMQRFFGLPETGKPDAATIEIMEKPRCGVPDSGDFLLTPGSPKWTHTNLTYRIINHTPQMSKAEVKTEIEKAFKIWSVPSTLTFTETLEGEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGRGIGGDAHFDSEETWTQDSKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPVQPTGPSTPTACDPHLRFDAATTLRGEIYFFKDKYFWRRHPQLRTVDLNFISLFWPFLPNGLQAAYEDFDRDLVFLFKGRQYWALSAYDLQQGYPRDISNYGFPRSVQAIDAAVSYNGKTYFFVNNQCWRYDNQRRSMDPGYPTSIASVFPGINCRIDAVFQQDSFFLFFSGPQYFAFNLVSRRVTRVARSNLWLNCP

Atome Classification :

(27 SA) .........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.-.-------.....160.......170.......180.......---190.......200...-.---...210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360....-...370.......380--.--..--....390.......400.......410.......420.......430.......440.......450.......460....
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MLHLKTLPFLFFFHTQLATALPVPPEHLEEKNMKTAENYLRKFYHLPSNQFRSARNATMIAEKLKEMQRFFGLPETGKPDAATIEIMEKPRCGVPDSGDFLLTPGSPKWTHTNLTYRIINHTPQMSKAEVKTEIEKAFKIWSVPSTLTFTETL-E-------GEADINIAFVSRDHGDNSPFDGPNGILAHAFQPGR---GIGGDAHFDSEETWTQ-D---SKNYNLFLVAAHEFGHSLGLSHSTDPGALMYPNYAYREPSTYSLPQDDINGIQTIYGPSDNPVQPTGPSTPTACDPHLRFDAATTLRGEIYFFKDKYFWRRHPQLRTVDLNFISLFWPFLPNGLQAAYEDFDRDLVFLFKGRQYWALSAYDLQQGYPRDI-SNYGFPRSVQAIDAAV--S--YN--GKTYFFVNNQCWRYDNQRRSMDPGYPTSIASVFPGINCRIDAVFQQDSFFLFFSGPQYFAFNLVSRRVTRVARSNLWLNCP
2 PsiBlast_PDB 84.2259%-113 - C1 -1FBL MMP1_PIG A:[1-367] ---------------------------------------------------------------------------------------------------FVLTPGNPRWENTHLTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVS-E-------GQADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGP---GIGGDAHFDEDERWTK-N---FRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIY--TGDVQLSQDDIDGIQAIYGPSENPVQPSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRTNSFYPEVELNFISVFWPQVPNGLQAAYEIADRDEVRFFKGNKYWAVRGQDVLYGYPKDIHRSFGFPSTVKNIDAAVFEE--DT--GKTYFFVAHECWRYDEYKQSMDTGYPKMIAEEFPGIGNKVDAVFQKDGFLYFFHGTRQYQFDFKTKRILTLQKANSWFNC-
7 PsiBlast_PDB 83.7352%-112 - C1 -4G0D MMP13_HUMAN A:[5-368] -------------------------------------------------------------------------------------------------------PRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWTS-S---SKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKI-SELGLPKEVKKISAAV--H--FEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC-
43 HHSearch 83.6352%-114 - C1 -4FVL ? A:[1-368] ---------------------------------------------------------------------------------------------------YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLH-D-------GIADIMISFGIKEHGDFYPFDGPSGLLAHAFPPGP---NYGGDAHFDDDETWTS-S---SKGYNLFLVAAHAFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYGPGDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQVDAELFLTKSFWPELPNRIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKI-SELGLPKEVKKISAAV--HFEDT--GKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPANSILWC-
19 PsiBlast_PDB 47.9977% -78 - C1 -3DPE MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21 PsiBlast_CBE 47.6878% -76 - C1 -1KBC MMP8_HUMAN B:[1-164] ---------------------------------------------------------------------------------------------------FMLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10 PsiBlast_PDB 47.4278% -79 - C1 -1KBC MMP8_HUMAN A:[1-164] ---------------------------------------------------------------------------------------------------FMLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12 PsiBlast_PDB 47.4077% -79 - C1 -1I73 MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22 PsiBlast_CBE 47.3977% -81 - C1 -3DPF MMP8_HUMAN B:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23 PsiBlast_CBE 47.2177% -80 - C1 -3DNG MMP8_HUMAN B:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9 PsiBlast_PDB 46.8178% -75 - C1 -1BZS MMP8_HUMAN A:[1-164] ---------------------------------------------------------------------------------------------------FMLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15 PsiBlast_PDB 46.7077% -76 - C1 -1ZP5 MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20 PsiBlast_PDB 46.6377% -74 - C1 -3DPF MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58 HHSearch 46.5378% -76 - C1 -1I76 MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17 PsiBlast_PDB 46.4277% -76 - C1 -1ZVX MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18 PsiBlast_PDB 46.4077% -76 - C1 -3DNG MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16 PsiBlast_PDB 45.8177% -73 - C1 -1ZS0 MMP8_HUMAN A:[1-163] ----------------------------------------------------------------------------------------------------MLTPGNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30 PsiBlast_CBE 45.1877% -76 - C1 -1JH1 MMP8_HUMAN A:[1-158] ---------------------------------------------------------------------------------------------------------NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11 PsiBlast_PDB 45.0577% -75 - C1 -1JAP MMP8_HUMAN A:[7-163] ----------------------------------------------------------------------------------------------------------PKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29 PsiBlast_CBE 44.8977% -75 - C1 -2OY2 MMP8_HUMAN A:[2-158] ----------------------------------------------------------------------------------------------------------PKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24 PsiBlast_CBE 44.8977% -71 - C1 -1MNC MMP8_HUMAN A:[5-162] ---------------------------------------------------------------------------------------------------------GPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTGIS-Q-------GEADINIAFYQRDHGDGSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31 PsiBlast_CBE 44.7577% -74 - C1 -1A86 MMP8_HUMAN A:[1-158] ---------------------------------------------------------------------------------------------------------NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28 PsiBlast_CBE 44.6577% -75 - C1 -2OY2 MMP8_HUMAN F:[2-158] ----------------------------------------------------------------------------------------------------------PKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25 PsiBlast_CBE 44.5777% -72 - C1 -3TT4 MMP8_HUMAN A:[1-159] --------------------------------------------------------------------------------------------------------GNPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRIS-Q-------GEADINIAFYQRDHGDNSPFDGPNGILAHAFQPGQ---GIGGDAHFDAEETWTN-T---SANYNLFLVAAHEFGHSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
64 HHSearch 42.1151% -73 - C1 -3AYU MMP2_HUMAN A:[1-166] ---------------------------------------------------------------------------------------------------YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIH-D-------GEADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGT---GVGGDSHFDDDELWTL-GK--GVGYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTK--NFRLSQDDIKGIQELYGASP---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
60 HHSearch 40.6053% -71 * C1 *1RM8 MMP16_HUMAN A:[2-169] ----------------------------------------------------------------------------------------------------------QKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVP-YSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGP---GIGGDTHFDSDEPWTL-GNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGP-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62 HHSearch 39.5350% -71 - C1 -4H1Q MMP9_HUMAN A:[1-160] ------------------------------------------------------------------------------------------------------FEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVY-S-------RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGP---GIQGDAHFDDDELWSLGK---GQGYSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFT--EGPPLHKDDVNGIRHLYG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
66 HHSearch 36.7041% -71 - C1 -4IN9 ? A:[5-165] ---------------------------------------------------------------------------------------------------------GSKWNKTTLKYYIYN----LTTTERENAIRSAFALWSDKSTLSFIQVYNP-------NQADIKIKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSI-N---GSGIDLITVAAHEIGHLLGIEHSNVSSALMYPYYTGIKR---QLDNDDCLAVWDLYGYP----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------