@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PF04886_MMP9_HUMAN: (2014-10-09 )
MSLWQPLVLVLLVLGCCFAAPRQRQSTLVLFPGDLRTNLTDRQLAEEYLYRYGYTRVAEMRGESKSLGPALLLLQKQLSLPETGELDSATLKAMRTPRCGVPDLGRFQTFEGDLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGVVVPTRFGNADGAACHFPFIFEGRSYSACTTDGRSDGLPWCSTTANYDTDDRFGFCPSERLYTQDGNADGKPCQFPFIFQGQSYSACTTDGRSDGYRWCATTANYDRDKLFGFCPTRADSTVMGGNSAGELCVFPFTFLGKEYSTCTSEGRGDGRLWCATTSNFDSDKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDVNGIRHLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPTAGPSTATTVPLSPVDDACNVNIFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKLDSVFEERLSKKLFFFSGRQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQYREKAYFCQDRFYWRVSSRSELNQVDQVGYVTYDILQCPED
Atome Classification :
(24 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210...------.------...220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MS
L
W
Q
P
L
V
L
V
L
L
V
L
G
C
CFAAPRQR
Q
S
T
L
V
L
FPGDLRTNL
T
D
R
Q
L
A
E
E
Y
L
Y
R
YG
Y
T
R
V
A
E
MRGESKSL
G
P
A
L
L
L
L
Q
K
Q
LSLPETGE
L
D
S
A
T
L
K
A
MRTPRCGVPDLGRFQTFEG
D
L
K
W
H
HH
N
I
T
Y
W
I
Q
N
YSEDL
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
AVTP
L
T
F
T
R
VYSRDA
D
I
V
I
Q
FGVAEHGDGYPFDGKDG
L
L
A
HAFPPGPGIQGDAHF
D
D
D
E
L
W
SLGK
G
------
V
------
V
V
PTRFGNADGA
A
C
HF
P
F
I
FEGRSY
S
A
CTTDGRSDGLPWCSTTANYDTDDRFGFCPSE
R
L
YTQDGNADGKPCQ
F
P
F
I
FQGQSY
S
A
CTTDGRSDG
Y
R
W
C
ATTANYDR
D
K
L
F
G
FCPTRAD
S
T
VMGGNSAG
E
L
C
V
F
P
F
T
F
LGK
E
Y
S
TCTSEGRGD
G
R
L
W
C
A
TTSNFDSDKKWGFCPDQG
Y
S
L
F
L
V
A
A
H
EF
G
H
ALGLDHSSV
P
E
A
L
M
Y
P
M
Y
RFTEGPPLHKD
D
V
N
G
I
R
H
LYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPTAGPST
A
T
T
VPLSPVDDACN
V
N
I
F
D
A
I
A
E
IG
N
Q
L
Y
L
F
KDG
K
Y
W
R
FSEGRGSRPQG
P
F
L
IADKWPA
L
P
R
K
L
D
S
V
F
E
E
R
L
S
KK
L
F
F
FSG
R
Q
V
W
V
Y
T
G
A
SVLG
P
R
R
L
D
K
LGLG
A
D
V
A
Q
V
T
G
A
L
RSGRG
K
M
L
L
FSG
R
R
L
W
R
F
D
V
K
A
Q
MVDPR
S
A
S
E
V
D
R
MFPGVPLD
T
H
D
V
F
Q
Y
R
E
K
A
Y
F
CQ
D
R
F
Y
W
R
VSSR
S
E
L
N
Q
V
DQV
G
Y
V
T
Y
D
I
LQCPED
15
PsiBlast_PDB
19.64
89%
-94
- C1 -
2OW0
1
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
19.04
89%
-91
- C1 -
2OVZ
1
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
19.01
89%
-92
- C1 -
4HMA
1
MMP9_HUMAN
B:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYSLF
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
19.01
90%
-91
- C1 -
4H2E
5
MMP9_HUMAN
A:
[2-128]
----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
------
V
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
18.87
89%
-93
- C1 -
1GKC
1
MMP9_HUMAN
A:
[5-128]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
PsiBlast_CBE
18.46
89%
-92
- C1 -
4H82
1
MMP9_HUMAN
B:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYSLF
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
17.97
89%
-90
- C1 -
4H1Q
1
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
17.13
89%
-89
- C1 -
2OW1
1
MMP9_HUMAN
B:
[5-124]
-----------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
17.13
90%
-88
- C1 -
4H3X
6
MMP9_HUMAN
A:
[2-128]
----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
------
V
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
16.97
89%
-90
- C1 -
1GKD
2
MMP9_HUMAN
B:
[9-128]
-----------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
16.97
89%
-87
- C1 -
2OW1
1
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
16.75
89%
-87
- C1 -
2OW2
1
MMP9_HUMAN
A:
[4-124]
----------------------------------------------------------------------------------------------------------------
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
16.73
89%
-89
- C1 -
2OW2
1
MMP9_HUMAN
B:
[5-124]
-----------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
16.59
89%
-86
- C1 -
4H1Q
1
MMP9_HUMAN
B:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYSLF
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
16.39
90%
-85
- C1 -
4H3X
2
MMP9_HUMAN
B:
[2-128]
----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
------
V
GYSLFL
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
16.31
89%
-87
* C1 *
2OVZ
1
MMP9_HUMAN
B:
[5-124]
-----------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
16.29
89%
-86
- C1 -
4H82
3
MMP9_HUMAN
C:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYSLF
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
16.22
89%
-86
- C1 -
1GKD
2
MMP9_HUMAN
A:
[5-128]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
16.12
89%
-84
- C1 -
4HMA
9
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
16.07
89%
-86
- C1 -
2OW0
1
MMP9_HUMAN
B:
[5-124]
-----------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
15.95
89%
-86
- C1 -
1GKC
1
MMP9_HUMAN
B:
[8-128]
----------------------------------------------------------------------------------------------------------------
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
15.88
89%
-84
- C1 -
4H82
1
MMP9_HUMAN
A:
[1-124]
-------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
QGYS
L
F
L
------
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
15.66
90%
-83
- C1 -
4H2E
5
MMP9_HUMAN
B:
[2-128]
----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
------
V
GYSLFL
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
8.62
61%
-77
- C1 -
3AYU
1
MMP2_HUMAN
A:
[9-127]
------------------------------------------------------------------------------------------------------------------
K
W
D
K
N
Q
I
T
Y
R
I
I
G
Y
T
P
D
L
D
P
E
T
V
D
D
A
F
A
R
A
F
Q
V
W
S
D
V
T
P
L
R
F
S
R
I
H
D
G
E
A
D
I
M
I
N
F
G
R
W
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
A
P
G
T
G
V
G
G
D
S
H
F
D
D
D
E
L
W
T
L
G
K
G
------
V
GYS
L
F
L
V
A
A
H
A
F
G
H
A
M
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------