@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PF04886_MMP9_RAT: (2014-10-09 )
MSPWQPLLLVLLALGYSFAAPHQRQPTYVVFPRDLKTSNLTDTQLAEDYLYRYGYTRAAQMMGEKQSLRPALLMLQKQLSLPQTGELDSETLKAIRSPRCGVPDVGKFQTFDGDLKWHHHNITYWIQSYTEDLPRDVIDDSFARAFAVWSAVTPLTFTRVYGLEADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDAHFDDDELWSLGKGAVVPTYFGNANGAPCHFPFTFEGRSYLSCTTDGRNDGKPWCGTTADYDTDRKYGFCPSENLYTEHGNGDGKPCVFPFIFEGHSYSACTTKGRSDGYRWCATTANYDQDKADGFCPTRADVTVTGGNSAGEMCVFPFVFLGKQYSTCTSEGRSDGRLWCATTSNFDADKKWGFCPDQGYSLFLVAAHEFGHALGLDHSSVPEALMYPMYHYHEDSPLHEDDIKGIHHLYGRGSKPDPRPPATTAAEPQPTAPPTMCSTAPPMAYPTGGPTVAPTGAPSPGPTGPPTAGPSEAPTESSTPDDNPCNVDVFDAIADIQGALHFFKDGRYWKFSNHGGNQLQGPFLIARTWPAFPSKLNSAFEDPQPKKIFFFLWAQMWVYTGQSVLGPRSLDKLGLGSEVTLVTGLLPRRGGKALLISRERIWKFDLKSQKVDPQSVTRLDNEFSGVPWNSHNVFQYQDKAYFCHDKYFWRVSFHNRVNQVDHVAYVTYDLLQCP
Atome Classification :
(24 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.....------..220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MS
P
W
Q
P
L
L
L
V
L
L
A
LGYSFAAPHQRQ
P
T
Y
V
V
FPRDLKTSNL
T
D
T
Q
L
A
E
D
Y
L
Y
RYG
Y
T
R
A
A
Q
M
MGEKQSL
R
P
A
L
L
M
L
Q
K
Q
LSLPQTGEL
D
S
E
T
L
K
A
I
RSPRCGVPDVGKFQTFDG
D
L
K
W
H
HH
N
I
T
Y
W
I
Q
S
Y
T
E
DL
P
R
D
V
I
D
D
S
F
A
R
A
F
A
V
W
SAVTP
L
T
F
T
R
VYGLE
A
D
I
V
I
Q
FGVAEHGDGYPFDGKDG
L
L
A
HAFPPGPGIQGDAHF
D
D
D
E
L
WSLGKG
A
------
V
V
P
T
Y
FGNANGAPCHF
P
F
T
FEG
R
S
Y
L
S
C
TTDGRNDGKPWCGTTADYDTDRKYGFCPSENLYTEHGNGDGK
P
C
V
F
P
F
I
FEGHSY
S
A
CTTKGRSDG
Y
R
W
C
A
TTANYDQDKADGFCPTR
A
D
V
T
V
TGGNSAG
E
M
C
V
F
P
F
V
F
LGKQYSTCTSEGRSDG
R
L
W
C
A
TTSNFDADKKWGFCPDQG
Y
S
L
F
L
V
A
A
H
EF
G
H
ALGLDHSSV
P
E
A
L
M
Y
P
M
Y
HYHEDSPL
H
E
D
D
I
K
G
I
H
H
L
YGRGSKPDPRPPATTAAEPQPTAPPTMCSTAPPMAYPTGGPTVAPTGAPSPGPTGPPTAGPSEAPTESSTPDDNPCN
V
D
V
F
D
A
I
A
D
I
Q
G
A
L
H
F
FKDG
R
Y
W
K
FSNHGGNQLQG
P
F
L
I
A
RTWPAF
P
S
K
L
N
S
AFEDPQP
K
K
I
F
F
F
L
W
A
Q
M
W
V
YTGQSVLGPR
S
L
D
KLGLGSE
V
T
L
V
T
G
LLPRRG
G
K
A
L
L
I
SRE
R
I
W
K
FDLKSQKV
D
P
Q
S
V
T
R
L
DNEFSGVPWNSHN
V
F
Q
Y
QD
K
A
Y
F
C
H
D
K
Y
F
W
R
V
S
FHNRVNQ
V
D
H
V
A
Y
V
T
Y
D
L
LQCP
11
PsiBlast_PDB
19.28
82%
-96
- C1 -
2OVZ
1
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
19.23
82%
-96
- C1 -
2OW0
1
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
18.74
82%
-96
- C1 -
1GKC
1
MMP9_HUMAN
A:
[5-128]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
PsiBlast_CBE
18.73
82%
-95
- C1 -
4HMA
1
MMP9_HUMAN
B:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYSLFL
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
17.91
82%
-94
- C1 -
2OW1
1
MMP9_HUMAN
B:
[5-124]
------------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
PsiBlast_CBE
17.68
82%
-94
- C1 -
4H82
1
MMP9_HUMAN
B:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYSLFL
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
17.13
82%
-91
- C1 -
4H2E
5
MMP9_HUMAN
A:
[2-128]
-----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
V
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
PsiBlast_CBE
17.02
82%
-92
- C1 -
2OVZ
1
MMP9_HUMAN
B:
[5-124]
------------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
17.01
82%
-92
- C1 -
1GKC
1
MMP9_HUMAN
B:
[8-128]
-----------------------------------------------------------------------------------------------------------------
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
PsiBlast_CBE
16.72
82%
-91
- C1 -
4H1Q
1
MMP9_HUMAN
B:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYSLFL
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
16.72
82%
-93
- C1 -
1GKD
2
MMP9_HUMAN
B:
[9-128]
------------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
16.61
82%
-90
- C1 -
2OW1
1
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
16.56
82%
-92
- C1 -
2OW2
1
MMP9_HUMAN
B:
[5-124]
------------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
16.53
82%
-90
- C1 -
4H1Q
1
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
16.44
82%
-90
- C1 -
2OW0
1
MMP9_HUMAN
B:
[5-124]
------------------------------------------------------------------------------------------------------------------
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
16.10
82%
-90
- C1 -
1GKD
2
MMP9_HUMAN
A:
[5-128]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
16.09
82%
-89
- C1 -
2OW2
1
MMP9_HUMAN
A:
[4-124]
-----------------------------------------------------------------------------------------------------------------
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
15.75
82%
-88
- C1 -
4H3X
6
MMP9_HUMAN
A:
[2-128]
-----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
V
GYS
L
F
L
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
PsiBlast_CBE
15.70
82%
-87
- C1 -
4H2E
5
MMP9_HUMAN
B:
[2-128]
-----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
V
GYSLFL
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
15.45
82%
-88
- C1 -
4H82
3
MMP9_HUMAN
C:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYSLFL
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
15.16
82%
-86
* C1 *
4H3X
2
MMP9_HUMAN
B:
[2-128]
-----------------------------------------------------------------------------------------------------------
F
Q
T
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
V
GYSLFL
V
A
A
H
E
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
15.15
82%
-87
- C1 -
4H82
1
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
14.81
82%
-85
- C1 -
4HMA
9
MMP9_HUMAN
A:
[1-124]
--------------------------------------------------------------------------------------------------------------
F
E
G
D
L
K
W
H
H
H
N
I
T
Y
W
I
Q
N
Y
S
E
D
L
P
R
A
V
I
D
D
A
F
A
R
A
F
A
L
W
S
A
V
T
P
L
T
F
T
R
V
Y
S
R
D
A
D
I
V
I
Q
F
G
V
A
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
P
P
G
P
G
I
Q
G
D
A
H
F
D
D
D
E
L
W
S
L
G
K
G
Q
GYS
L
F
L
V
A
A
H
Q
F
G
H
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
9.24
62%
-80
- C1 -
3AYU
1
MMP2_HUMAN
A:
[9-127]
-------------------------------------------------------------------------------------------------------------------
K
W
D
K
N
Q
I
T
Y
R
I
I
G
Y
T
P
D
L
D
P
E
T
V
D
D
A
F
A
R
A
F
Q
V
W
S
D
V
T
P
L
R
F
S
R
I
H
D
G
E
A
D
I
M
I
N
F
G
R
W
E
H
G
D
G
Y
P
F
D
G
K
D
G
L
L
A
H
A
F
A
P
G
T
G
V
G
G
D
S
H
F
D
D
D
E
L
W
T
L
G
K
G
V
GYS
L
F
L
V
A
A
H
A
F
G
H
A
M
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------