@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : PF00105_COT2_HUMAN: (2016-03-18 )
MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ

Atome Classification :

(20 SA) .........10........20........30........40........50........60........70........80........90........100.......110--.......120.......130.......140.......--------150.......160.------------------------------------.....--.170.......180......-------.190.......200.......210.......220.......230.......240.......250.......260.......270.......280..--.....-290........300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410..
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLS--YTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV--------QRGRMPPTQPTHGQ------------------------------------FALTN--GDPLNCHSYLSGYISLLLRA-------EPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFM-D-HIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
4 PsiBlast_PDB 84.9543%-109 - C1 -4NQA RXRA_HUMAN A:[31-358] ----------------------------------------------------------------------ASFTKHI-CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLT--YTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV--------QEERQRG-----------------------------------------------SSANEDMPVERILEAELAVEPKT-------ETY-EANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILL-ATGLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
1 PsiBlast_PDB 82.4899%-146 - C1 -3CJW - COT2_HUMAN A:[173-407] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NSHSYLSGYISLLLRA-------EPYPT-------------MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP-------------------VAFM-D-HIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN-------
24 HHSearch 82.32100%-148 - C1 -3CJW - COT2_HUMAN A:[178-407] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSGYISLLLRA-------EPYPT-------------MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP-------------------VAFM-D-HIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFN-------
2 PsiBlast_PDB 80.5041%-117 - C1 -3DZU RXRA_HUMAN A:[137-460] --------------------------------------------------------------------------KHI-CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLT--YTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV--------QEERQR-------------------------------------------------A-NEDMPVERILEAELA----------------------------D--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILL-ATGLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
3 PsiBlast_PDB 80.4741%-120 - C1 -3E00 RXRA_HUMAN A:[137-460] --------------------------------------------------------------------------KHI-CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLT--YTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV--------QEERQR-------------------------------------------------A-NEDMPVERILEAELAVE------------------------------VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILL-ATGLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
47 Fugue 79.0132% -95 - C1 -4NQA NR1H2_HUMAN I:[5-389] -----------------------------KGPAP-------------------------------------KMLGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTA--AQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGA--DPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETAR-RYNHETECITFLKDFTYSKDDFHR--AGLQV-E-FINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDK-KLPPLLSEIWDV------------
19 PsiBlast_PDB 69.1343%-112 - C1 -1XLS RXRA_HUMAN A:[19-229] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
15 PsiBlast_PDB 68.8243%-116 - C1 -1FM9 RXRA_HUMAN A:[21-231] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
6 PsiBlast_PDB 68.2945%-135 - C1 -4LOG - NR2E3_HUMAN A:[375-566] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP-------------LTLAS-M-ETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLSDMF--------------
38 HHSearch 68.0640%-125 - C1 -2NXX - ? A:[35-231] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ-DAIVLATGLTVNKSTAH---AVGVG-NIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG------------
18 PsiBlast_PDB 67.9643%-110 - C1 -1K74 RXRA_HUMAN A:[21-231] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
14 PsiBlast_PDB 67.9543%-113 - C1 -1FM6 RXRA_HUMAN A:[21-231] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
11 PsiBlast_PDB 67.8843%-114 - C1 -4J5X - D:[19-246] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLN---PND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
37 HHSearch 66.5637%-130 - C1 -1PZL HNF4A_HUMAN A:[39-236] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFK-DVLLLGNDYIVPRHCPE---LAEMSRV-SIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRFGELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGG-----------
9 PsiBlast_PDB 66.5243%-102 - C1 -1XV9 RXRA_HUMAN A:[19-229] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
10 PsiBlast_PDB 66.4743%-105 - C1 -1XVP RXRA_HUMAN A:[19-229] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
26 HHSearch 65.0325%-121 - C1 -1XDK RARB_MOUSE B:[71-268] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMH---NAGFG-P-LTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGH--------
31 HHSearch 64.6330%-123 * C1 *2E2R ERR3_HUMAN A:[46-242] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFE-DELVYADDYIMDEDQ-SK--LAGLL-D-LNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEAK-----------
16 PsiBlast_PDB 63.8543%-105 - C1 -1G5Y - RXRA_HUMAN A:[21-231] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KT-------ETYVEANMGLNPSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-GLHVHRNSAHSAGVGAIF-D---RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--------------
41 HHSearch 63.0727%-125 - C1 -1FCY RARG_HUMAN A:[43-236] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQ-DTMTFSDGLTLNRTQMH---NAGFG-P-LTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPLIREMLE-------------