@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : PF00105_NR2E3_HUMAN: (2016-03-19 )
METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN

Atome Classification :

(20 SA) .........10........20........30........40........50........60........70........80....-....90........100.......110.......120.-......130.......140----.......150.......160.......170.......180.......190.......200.......------210.......220.......230.......240.......250.......260.....-..270.......280.......---------------290.........300.......310..---.....320.......330-........340.......350.......360.......370.......380.......390.......400.......410
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQV-GAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQ-PRSTAQVHLDSMESNTESR----PESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPY------SSSSPCGLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQ-WSLPLDSCPLLAPPEASAAGGA---------------Q--GRLTLASMETRVLQETISRFRALA---VDPTEFACMKALVLFKP--ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
1 PsiBlast_PDB 87.3599%-139 - C4 -4LOG - NR2E3_HUMAN A:[375-568] ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQ-WSLPLDSCPLLAPP----------------------------LTLASMETRVLQETISRFRALA---VDPTEFACMKALVLFKP--ETRGLKDPEHVEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLSDMFKN
2 PsiBlast_PDB 76.1936% -83 - C4 -4NQA RXRA_HUMAN A:[38-359] ----------------------------------------------CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD-NKD-CLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG-----------SSANEDM----PVERILE-AELAVEPKTETY-EANMGL-------------------------------NPSSPNDPV------TN--------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--S-AGVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
4 PsiBlast_PDB 75.5236% -96 - C4 -3E00 RXRA_HUMAN A:[140-460] ----------------------------------------------CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD-NKD-CLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR--------------ANEDM----PVERILE-AELAVE----------------------------------------------------V------TN--------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--
3 PsiBlast_PDB 74.4536% -94 - C4 -3DZU RXRA_HUMAN A:[140-460] ----------------------------------------------CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRD-NKD-CLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR--------------ANEDM----PVERILE-AELA----------------------------------------------------DPV------TN--------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEML--
46 Fugue 73.9027% -74 - C4 -4NQA NR1H2_HUMAN I:[5-389] --------------------------KGPAPKMLGHEL--------CRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQ-IRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYS--------------------K--DDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSA--DRPNVQEPGRVEALQQPYVEALLSYTRIKRPQDQLRFPRMLMKLVSLRTLSSVHSEQVFALRL-QDKKLPPLLSEIWDV
32 HHSearch 72.0946%-129 - C4 -3CJW - COT2_HUMAN A:[207-401] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQ-CSMPLHVAP----------------------------------VAFMDHIRIFQEQVEKLKALH---VDSAEYSCLKAIVLFTS--DACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLL-
5 PsiBlast_PDB 66.4148%-105 - C4 -4XAJ - MALE_ECO57 (first) A:[376-574] -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQ-WAIPVDANTLLAVSGMNGDNTD---------------S--QRLTLIISEIQALQEVVARFRQLR---LDATEFACLKCIVTFKAVP-LRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPVRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYK-
44 HHSearch 63.3637%-108 - C4 -2P1T RXRA_HUMAN A:[41-234] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKD-GILLATGLHVHRNS---------------A--HSAGVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
20 PsiBlast_PDB 62.8537% -77 - C4 -4J5X - D:[10-247] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNP---------NDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
31 HHSearch 62.3732%-112 - C4 -2NXX - ? A:[36-231] ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSH-RSMQA-QDAIVLATGLTVNKST---------------A--HAVGVGNIYDRVLSELVNKMKEMK---MDKTELGCLRAIILYNP--DVRGIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEG
39 HHSearch 61.7427% -99 - C4 -2E2R ERR3_HUMAN A:[48-241] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVY-RSLSFE-DELVYADDYIMDEDQ------------------SKLAGLLDLNNAILQLVKKYKSMK---LEKEEFVTLKAIALANS--DSMHIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKMLMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEA
10 PsiBlast_PDB 61.2637% -78 - C4 -1FM9 RXRA_HUMAN A:[12-232] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNPS------SPNDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
33 HHSearch 61.1227%-114 - C4 -1HG4 USP_DROME A:[47-268] ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAW-CSIVSL----------------QPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLN---LDRRELSCLKAIILYNP--DIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEA
9 PsiBlast_PDB 60.2537% -75 - C4 -1FM6 RXRA_HUMAN A:[12-232] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNPS------SPNDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
17 PsiBlast_PDB 59.4737% -68 - C4 -1XLS RXRA_HUMAN A:[10-230] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNPS------SPNDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
28 HHSearch 59.4623% -99 - C4 -1XDK RARB_MOUSE B:[72-263] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICT-RYTPE-QDTMTFSDGLTLNRTQ------------------MHNAGFGPLTDLVFTFANQLLPLE---MDDTETGLLSAICLICG--DRQDLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKILMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLE-
13 PsiBlast_PDB 59.2737% -73 - C4 -1K74 RXRA_HUMAN A:[12-232] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNPS------SPNDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
14 PsiBlast_PDB 59.0137% -77 - C4 -1MZN RXRA_HUMAN A:[14-234] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEAN--------------NDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-
26 HHSearch 58.4523% -95 * C4 *3KMR RARA_HUMAN A:[69-260] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICT-RYTPE-QDTMTFSDGLTLNRTQ------------------MHNAGFGPLTDLVFAFANQLLPLE---MDDAETGLLSAICLICG--DRQDLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLE-
19 PsiBlast_PDB 58.2237% -66 - C4 -1XVP RXRA_HUMAN A:[10-230] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LEAELAVEPKTETYVEANMGLNPS------SPNDP--VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSH-RSIAVKDGILLATGLHVHRNSA---------------H--SA-GVGAIFDRVLTELVSKMRDMQ---MDKTELGCLRAIVLFNP--DSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLE-