@TOME V2.3
(Nov 2016)

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3D Common Core:

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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : GPR4_HUMAN: (2016-01-10 )
MGNHTWEGCHVDSRVDHLFPPSLYIFVIGVGLPTNCLALWAAYRQVQQRNELGVYLMNLSIADLLYICTLPLWVDYFLHHDNWIHGPGSCKLFGFIFYTNIYISIAFLCCISVDRYLAVAHPLRFARLRRVKTAVAVSSVVWATELGANSAPLFHDELFRDRYNHTFCFEKFPMEGWVAWMNLYRVFVGFLFPWALMLLSYRGILRAVRGSVSTERQEKAKIKRLALSLIAIVLVCFAPYHVLLLSRSAIYLGRPWDCGFEERVFSAYHSSLAFTSLNCVADPILYCLVNEGARSDVAKALHNLLRFLASDKPQEMANASLTLETPLTSKRNSTAKAMTGSWAATPPSQGDQVQLKMLPPAQ

Atome Classification :

(20 SA) .........---10-.-------------........20...-------.....30........40........50........60........--70..-......80........90........100.......110.......120..-.....130.......140--.......150.......160.......-------170....---.---.--.180-.---......---.190--.-------......200-----......-----------..---------------------------------------------210------------------------------..-.------.------------------..-----------------------------------------...220-..----......230---......----.240.--......250.-.-..---...---------260....--...270-----.........280.......-----290.......300.......310.......----320.......330.......340...-....350.......360------------------------------------------------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) MGNHTWEGC---H--V-------------DSRVDHLFPPSLY-------IFVIGVGLPTNCLALWAAYRQVQQRNELGVYLMNLSIADLLYICT--LPLW-VDYFLHHDNWIHGPGSCKLFGFIFYTNIYISIAFLCCISVDRYLAVAHPLR-FARLRRVKTAVAVSSVVW--ATELGANSAPLFHDELFRDRYNHTFCF-------EKFPMEG---W---V--AWM--N---LYRVFV---GFLF--P-------WALMLLSY------RGILRA-----------VR---------------------------------------------G--------------------------------SV-S------T------------------ER-----------------------------------------QEKAK--IK----RLALSLIAI---VLVCFA----PYHVL--LLSRSAIYLG-R-PW---DCG---------FEERVFS--AYHS-------SLAFTSLNCVADPILYCLV-----NEGARSDVAKALHNLLRFLASDKPQEMANA----SLTLETPLTSKRNSTAKAMTGSWAAT-PPSQGDQVQLKMLPPAQ------------------------------------------------------------------------------------
39 Fugue 92.2130%-132 - C1 -4XNV P2RY1_HUMAN (first) A:[38-382] ----SFKCA---L--T-------------KTGFQFYYLPAVY-------ILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT--LPAL-IFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKS-LGRLKK-KNAICISVLVW--LIVVVAISPILFYSGTGVRKNKTITCY-------DTTSDEY---L---R--SYF--I---YSMCTT---VAMFCVP-------LVLILGCY------GLIVRA-----------LI---------------------------------------------Y--------------------------------KM-K------K------------------YTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEP--LR----RKSIYLVII---VLTVFAVSYIPFHVMKTMNLRARLDFQ-T-PA---MCA---------FNDRVYA--TYQV-------TRGLASLNSCVNPILYFLA-----GDTFRRR-----------------------------------------------------------------------------------------------------------------------------------------------------------
2 PsiBlast_PDB 87.2927%-137 - C1 -4XNW RUBR_CLOPA A:[54-382] --------------------------------------PAVY-------ILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT--LPAL-IFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPLKSLGRLKK-KNAICISVLVW--LIVVVAISPILFYSGTGVRKNKTITCY-------DTTSDEY---L---R--SYFIYS---MCTTVA---MFCV--P-------LVLILGCY------GLIVRALIYKMKKYTCTVC---------------------------------------------GYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGV-G------K------------------DQ-----------------------------------------FEEVEEPLR----RKSIYLVII---VLTVFAVSYIPFHVMKTMNLRARLDFQ-T-PA---MCA---------FNDRVYA--TYQV-------TRGLASLNSCVNPILYFLA-----GDTFRRR-----------------------------------------------------------------------------------------------------------------------------------------------------------
1 PsiBlast_PDB 87.2027%-139 - C1 -4XNV P2RY1_HUMAN A:[54-382] --------------------------------------PAVY-------ILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLT--LPAL-IFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSLGRLKK-KNAICISVLVW--LIVVVAISPILFYSGTGVRKNKTITCY-------DTTSDEY---L---R--SYFIYS---MCTTVA---MFCV--P-------LVLILGCY------GLIVRALIYKMKKYTCTVC---------------------------------------------GYIYNPEDGDPDNGVNPGTDFKDIVCPLC----GV-G------K------------------DQ-----------------------------------------FEEVEEPLR----RKSIYLVII---VLTVFAVSYIPFHVMKTMNLRARLDFQ-T-PA---MCA---------FNDRVYA--TYQV-------TRGLASLNSCVNPILYFLA-----GDTFRRR-----------------------------------------------------------------------------------------------------------------------------------------------------------
43 Fugue 85.5026%-112 - C1 -3ODU CXCR4_HUMAN (first) A:[37-502] -------PC---FREE-------------NANFNKIFLPTIY-------SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT--LPFW-AVDAV--ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN-SQRPRKLLAEKVVYVGVW--IPALL-LTIPDFIFANVSEADDRYICD-------RFYPNDL---W---V--VVF--Q---FQHIMV---GLIL--P-------GIVILSCY------CIIISK-----------LSHSGSNIF--------------------------------------E--------------------------------ML-R------I------------------DE-----------------------------------------GLRLK--IY----KDTEGYYTIGIGHLLTKS----PSLNA--AKSELDKAIG-R-NT---NGVITKDEAEKLFNQDVDA--AVRGILRNAKLKPVYDSLDAVRRAALINMV-----FQMGETGVA-GFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITT-FRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ-
10 PsiBlast_PDB 80.6722%-140 - C1 -4MBS CCR5_HUMAN (first) A:[21-359] -------PCQKIN--V-------------KQIAARLLPP-LY-------SLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLT--VPFW-AHY--AAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVF-ALKARTVTFGVVTSVITW--VVAVFASLPNIIFTRSQKEGLHYT-CS-------SHFPYSQ---Y---Q--FWK--NFQTLKIVIL---GLVL--P-------LLVMVICY------SGILKT-----------LLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVG--------------------------------KD-Q------F------------------EE-----------------------------------------VEEEK--KRHRDVRLIFTIMIV---YFLFWA----PYNIV--LLLNTFQEFF-G-LN---NCS---------SSNRLDQ--AMQV-------TETLGMTHCCINPIIYAFV-----GEEFRNYLLVFFQ-----------------------------------------------------------------------------------------------------------------------------------------------------
5 PsiBlast_PDB 79.4027%-129 - C1 -4RWD C562_ECOLX (first) A:[127-397] ---------------------------------------ALY-------SAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST--LPFQ-SAKYLM-ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPAKAKLINICIW--VLASGVG-VPIMVMAVTRPRDGAVVCM-------LQFPSPS---W---Y---WD--T---VTKICVFLFAFVV--P-------ILIITVCYGLMLLRLRSVRL-----------LS---------------------------------------------G--------------------------------SK-E------K------------------DR-----------------------------------------SLR-R--IT----RMVLVVVGA---FVVCWA----PIHIF--VIVWTLVDID-R-R-----------------DPLVVA--ALHL-------CIALGYANSSLNPVLYAFL-----DENFKRCFRQLC------------------------------------------------------------------------------------------------------------------------------------------------------
4 PsiBlast_PDB 78.9427%-134 - C1 -4RWA C562_ECOLX (first) A:[127-397] ---------------------------------------ALY-------SAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST--LPFQ-SAKYLM-ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPAKAKLINICIW--VLASGVG-VPIMVMAVTRPRDGAVVCM-------LQFPSPS---W---Y---WD--T---VTKICVFLFAFVV--P-------ILIITVCYGLMLL-----------------------------------------------------------------G--------------------------------SK-E------K------------------DR-----------------------------------------SLR-R--IT----RMVLVVVGA---FVVCWA----PIHIF--VIVWTLVDID-R-R-----------------DPLVVA--ALHL-------CIALGYANSSLNPVLYAFL-----DENFKRCFRQLC------------------------------------------------------------------------------------------------------------------------------------------------------
41 Fugue 78.8721%-111 - C1 -1F88 OPSD_BOVIN A:[1-348] MNGTEGPNF---Y--VPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--GFTT-TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFG-ENHAIMGVAFTW--VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNES---F---V--IYM--F---VVH-------FII--P-------LIVIFFCY------GQLVFT-----------VKEA-------------------------------------------A--------------------------------AS-A------T------------------TQ-----------------------------------------KAEKE--VT----RMVIIMVIA---FLICWL----PYAGV--AFYIFT---H-Q-GS---DFG---------PIFMTIP--AFFA-------KTSA-----VYNPVIYIMM-----NKQFRNCMVTTLCC-------------------------------------------GKN-PSTTVSKTETSQVAPA-------------------------------------------------------------------------------------
3 PsiBlast_PDB 77.3727%-128 - C1 -4N6H OPRD_HUMAN A:[130-400] ---------------------------------------ALY-------SAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADALATST--LPFQ-SAKYLM-ETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVK-ALDFRTPAKAKLINICIW--VLASGVG-VPIMVMAVTRPRDGAVVCM-------LQFPSPS---W---Y---WD--T---VTKICVFLFAFVV--P-------ILIITVCYGLMLLRLRSVRL-----------LS---------------------------------------------G--------------------------------SK-E------K------------------DR-----------------------------------------SLR-R--IT----RMVLVVVGA---FVVCWA----PIHIF--VIVWTLVDID-R-R-----------------DPLVVA--ALHL-------CIALGYANSSLNPVLYAFL-----DENFKRCFRQLCRKPCG-------------------------------------------------------------------------------------------------------------------------------------------------
7 PsiBlast_PDB 74.7627%-123 - C1 -4EA3 C562_ECOLX (first) A:[130-402] ---------------------------------------GLY-------LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT--LPFQGTDILLGF--WPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHP--------TSSKAQAVNVAIWALASVVGVPVAIMGSAQV-EDEEIECLVE-------IPTPQDY---W---G--PVF--A---ICIFLF---SFIV--PVLVISVCYSLMIRRL------RGV-RL-----------LS---------------------------------------------G--------------------------------SR-E------K------------------DR-----------------------------------------NLR-R--IT----RLVLVVVAV---FVGCWT----PVQVF--VLAQG---LGVQ-PS----------------SETAVA--ILRF-------CTALGYVNSCLNPILYAFL-----DENFKACFR---------------------------------------------------------------------------------------------------------------------------------------------------------
6 PsiBlast_PDB 74.1228%-128 - C1 -5C1M ? A:[22-293] ---------------------------------------ALY-------SIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST--LPFQSVNYLM--GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK-ALDFRTPRNAKIVNVCNW--ILS-SAIGLPVMFMATTKYRQGSIDCT-------LTFSHPT---W------YWE--N---LLKICVFIFAFIM--PVLIITVCYGLMILRL------KSV-RM-----------LS---------------------------------------------G--------------------------------SK-E------K------------------DR-----------------------------------------NLR-R--IT----RMVLVVVAV---FIVCWT----PIHIY--VIIKALITI----------------------PETTFQTVSWHF-------CIALGYTNSCLNPVLYAFL-----DENFKRCF----------------------------------------------------------------------------------------------------------------------------------------------------------
42 Fugue 73.6621% -87 - C1 -1U19 OPSD_BOVIN A:[4-349] MNGTEGPNF---Y--VPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--GFTT-TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFG-ENHAIMGVAFTW--VMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNES---F---V--IYM--F---VV-------HFII--P-------LIVIFFCY------GQLVFT-----------VK---------------------------------------------E--------------------------------AA-AQQQESAT------------------TQ-----------------------------------------KAEKE--VT----RMVIIMVIA---FLICWL----PYAGV--AF---YIFTH-Q-GS---DFG---------PIFMTIP--AFFA-------KTSA-----VYNPVIYIMM-----NKQFRNCMVTTL-----------------------CCGKNPLGDDEASTTVSKTETSQVA-PA---------------------------------------------------------------------------------------------------
28 HHSearch 69.1617%-116 - C1 -2Z73 OPSD_TODPA A:[35-335] -----------------------------------YSLGIFI-------GICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLM-TIS-CFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA-ASKKMSHRRAFIMIIFVW--LWSVLWAIGPIFGWGAYTLEGVLCNCS-------FDYISRD---ST--T--RSN--I---LCMFIL---GFFG--P-------ILIIFFCY------FNIVMS-----------VS---------------------------------------------N--------------------------------HE-K------EMAAMAKRLNAKELRKAQAGA-----------------------------------------NAEMR--LA----KISIVIVSQ---FLLSWS----PYAVV--ALLAQFGPL---------E-------------WVTPY--AAQL-------PVMFAKASAIHNPMIYSVS-----HPKFREAISQTFPWVLTCCQFDDKETEDDK----DAETEIPAGE----------------------------------------------------------------------------------------------------------------------
8 PsiBlast_PDB 68.8927%-141 - C1 -4XT1 US28_HCMVA A:[70-314] --------------------------------------------------------------------RRIQCSGD--VYFINLAAADLLFVCT--LPLW-MQYLLD-----SVP--CTLLTACFYVAMFASLCFITEIALDRYYAIV-----YMRYRPVKQACLFSIFWW-----IFAVIIAIPHFMVVTKKDNQCMTD-------YDYLEVS---Y---P--IIL--N---VELMLG---AFVI--P-------LSVISYCY------YRISRI-----------VA---------------------------------------------V--------------------------------S----------------------------QS-----------------------------------------RHKGR--IV----RVLIAVVLV---FIIFWL----PYHLT--LFVDTLKLLK----WISSSCE---------FERSLKR--ALIL-------TESLAFCHCCLNPLLYVFV-----GTKFRQE----LHCLLAEFR----------------------------------------------------------------------------------------------------------------------------------------------
26 HHSearch 68.5525%-117 - C1 -2LNL - CXCR1_HUMAN A:[38-321] ---------------------------------NKYVVIIAY-------ALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALT--LPIW-AASK--VNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATR-TLTQ-KRHLVKFVCLGCW--GLSMNLSLPFFLFRQAYHPNNSSPVCY-------EVLGNDTAK-W---R--MVL--R---ILPHTF---GFIV--P-------LFVMLFCY------GFTLRT-----------LF---------------------------------------------K--------------------------------AH-M--------------------------------------------------------------------GQKHR--AM----RVIFAVVLI---FLLCWL----PYNLV--LLADTLMRTQ-VIQE---SCE---------RRNNIGR--ALDA-------TEILGFLHSCLNPIIYAFI-----GQNFRHGFLKILAMHG--------------------------------------------------------------------------------------------------------------------------------------------------
31 HHSearch 68.2518%-126 - C1 -2KS9 NK1R_HUMAN A:[35-323] -------------------------------------WAAAY-------TVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFN-TVVN-FTY-AVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ-PRLSA--TATKVVICVIW--VLALLLAF-PQGYYSTTETMPSRVVCM-------IEWPEHP---NKIYE--KVY--H---ICVTVL---IYFL--P-------LLVIGYAY------TVVGIT-----------LW---------------------------------------------A--------------------------------SE-I------PGDSSDRYHE---------QV-----------------------------------------SAKRK--VV----KMMIVVVCT---FAICWL----PFHIF--FLLPYINP----------DLY---------LKKFIQQ--VYLA-------IMWLAMSSTMYNPIIYCCL-----NDRFRLGFKHAFRCCPFISAGDYEGLEMKS----TRYLQTQGSVYKVSRLETTISTVVGA------------------------------------------------------------------------------------------------------
9 PsiBlast_PDB 65.7627%-135 - C1 -4XT3 US28_HCMVA A:[70-314] --------------------------------------------------------------------RRIQCSGD--VYFINLAAADLLFVCT--LPLW-MQYLLDH---ASVP--CTLLTACFYVAMFASLCFITEIALDRYYAIV-----YMRYRPVKQACLFSIFWW-----IFAVIIAIPHFMVVTKKDNQCMTD-------YDYLEVS---Y---P--IIL--N---VELMLG---AFVI--P-------LSVISYCY------YRISRI-----------VA---------------------------------------------V--------------------------------S----------------------------QS-----------------------------------------RHKGR--IV----RVLIAVVLV---FIIFWL----PYHLT--LFVDTLKLLK----WISSSCE---------FERSLKR--ALIL-------TESLAFCHCCLNPLLYVFV-----GTKFRQE----LHCLLAE------------------------------------------------------------------------------------------------------------------------------------------------
32 HHSearch 65.1219%-105 - C1 -1U19 OPSD_BOVIN A:[42-323] ------------------------------------MLAAYM-------FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG--GFTT-TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRF-GENHAIMGVAFTW--VMALACAAPPLVGWSRYIPEGMQCSCG-------IDYYTPHEETN---N--ESF--V---IYMFVV---HFII--P-------LIVIFFCY------GQLVFT-----------VK---------------------------------------------E--------------------------------AA-A------QQQESAT------------TQ-----------------------------------------KAEKE--VT----RMVIIMVIA---FLICWL----PYAGV--AFYIFTH------QG---S-------------DFGPI--FMTI-------PAFFAKTSAVYNPVIYIMM-----NKQFRNCMVTTLCCGKNPLGDDEASTTVSK----TETSQVAPA-----------------------------------------------------------------------------------------------------------------------
45 Fugue 62.8214% -96 - C1 -2RH1 ADRB2_HUMAN (first) A:[36-477] ------------------------------DEVWVVGMGIVM-------SLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA--VVPF-GAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFK-YQSLLTKNKARVIILMVW--IVSGLTSFLPIQMHWYRATHQEAINCY-------AEETCCD---F---FTNQAY--A---IASSIV---SFYV--P-------LVIMVFVY------SRVFQE-----------AK---------------------------------------------R--------------------------------QLNI------F------------------EM-----------------------------------------LRIDE--GL----RLKIYKDTE---GYYTIG----IGHLL--TKSPSLNAAK-S-EL---DKA---------IGRNTNG--VITK-------DEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF----TNSLRMLQQKRWDEAAVNLAKSRWYN-QTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCL
23 HHSearch 60.6828%-131 - C1 -3ODU CXCR4_HUMAN (first) A:[48-239] ----------------------------------KIFLPTIY-------SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT--LPFW-AVDAV--ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATN-SQRPRKLLAEKVVYVGVW--IPALLLTIPDFIFANVSE-ADDRYICD-------RFYPNDL---W---V--VVF--Q---FQHIMV---GLIL--P-------GIVILSCY------CIIISK-----------LS---------------------------------------------H--------------------------------SG-S------N------------------IF-----------------------------------------EMLRI--DE----GLRLKIYKD---TEGYYT----IGIGH--LLTKSPSLNA-A-KS---ELD---------KAIGRNT--NGVI-------TKDEAEKLFNQDVDAAVRG-----ILRNAKLKPVYDSLDAVRRAALINMVFQMG----ETGVAGFTNSLRMLQQKRWDEAAVNL-AKSRWYNQTPNRAKRVI------------------------------------------------------------------------------------