@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : IKKB_HUMAN: (2013-07-21 )
MSWSPSLTTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIKQCRQELSPRNRERWCLEIQIMRRLTHPNVVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYAKELDQGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNGTVKFSSSLPYPNNLNSVLAERLEKWLQLMLMWHPRQRGTDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQCISDGKLNEGHTLDMDLVFLFDNSKITYETQISPRPQPESVSCILQEPKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKLLVERMMALQTDIVDLQRSPMGRKQGGTLDDLEEQARELYRRLREKPRDQRTEGDSQEMVRLLLQAIQSFEKKVRVIYTQLSKTVVCKQKALELLPKVEEVVSLMNEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNASRLSQPGQLMSQPSTASNSLPEPAKKSEELVAEAHNLCTLLENAIQDTVREQDQSFTALDWSWLQTEEEEHSCLEQAS
Atome Classification :
(10 SA)
.........10........20........30--.........40.---..--.....--50..---......60.........70........80........90........100.......110.......120.......130.....-..140.......150........160-.......170..-.....180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620.......630.......640.......650.......660.......670.......680.......690.......700.......710.......720.......730.......740.......750....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
MSWSPSLTTQTCGAWEMKERLGTGGFGNVI---RWHNQETGEQIA---IK--QCRQE--LSPR---NRERWCL-EIQIMRRLTHPNVVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLH-ENRIIHRDLKPENI-VLQQGEQRLIH-KIIDLGYAKELD-QGSLCTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNGTVKFSSSLPYPNNLNSVLAERLEKWLQLMLMWHPRQRGTDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQCISDGKLNEGHTLDMDLVFLFDNSKITYETQISPRPQPESVSCILQEPKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKLLVERMMALQTDIVDLQRSPMGRKQGGTLDDLEEQARELYRRLREKPRDQRTEGDSQEMVRLLLQAIQSFEKKVRVIYTQLSKTVVCKQKALELLPKVEEVVSLMNEDEKTVVRLQEKRQKELWNLLKIACSKVRGPVSGSPDSMNASRLSQPGQLMSQPSTASNSLPEPAKKSEELVAEAHNLCTLLENAIQDTVREQDQSFTALDWSWLQTEEEEHSCLEQAS
130
HHSearch
43.67
30%
-76
- C3 -
4GV1
5
AKT1_HUMAN
A:
[7-253]
-----------
M
N
E
F
E
Y
L
K
L
L
G
K
G
T
F
G
K
V
I
---
L
V
K
E
K
A
T
G
R
Y
Y
A
---
M
K
--
I
L
K
K
E
V
I
V
A
K
D
---
E
V
A
H
T
L
T
-
E
N
R
V
L
Q
N
S
R
H
P
F
L
T
A
L
K
Y
S
F
Q
T
------
H
D
R
L
C
F
V
M
E
Y
A
N
G
G
E
L
F
F
H
L
S
R
---
E
R
V
F
S
E
D
R
A
R
F
Y
G
A
E
I
V
S
A
L
D
Y
L
H
S
E
K
N
V
V
Y
R
D
L
K
L
E
N
L
-
M
L
D
K
-
D
G
--
H
I
-
K
I
T
D
F
G
L
C
K
E
G
I
K
D
G
A
T
M
K
T
F
C
G
T
P
E
Y
L
A
P
E
V
L
E
D
N
D
Y
G
R
A
V
D
W
W
G
L
G
V
V
M
Y
E
M
M
C
G
R
L
P
F
Y
N
Q
-
D
H
E
K
L
F
E
L
I
L
M
-------------
E
E
I
R
------
F
P
R
T
L
G
P
----
E
A
K
S
L
L
S
G
L
L
K
K
D
P
K
Q
R
L
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
72
PsiBlast_CBE
41.85
32%
-76
- C3 -
2CKE
1
DAPK2_HUMAN
D:
[14-219]
--------------
Y
D
I
G
E
E
L
G
S
G
Q
F
A
I
V
K
---
K
C
R
E
K
S
T
G
L
E
Y
A
---
A
K
FI
K
K
R
Q
S
--
R
A
S
R
RGV
S
R
E
E
I
E
R
-
E
V
S
I
L
R
Q
V
L
H
H
N
V
I
T
L
H
D
V
Y
E
N
R
T
D
V
------
V
L
I
L
E
L
V
S
G
G
E
L
F
D
F
L
A
Q
K
E
S
---
L
S
E
E
E
A
T
S
F
I
K
Q
I
L
D
G
V
N
Y
L
H
-
T
K
K
I
A
H
F
D
L
K
P
E
N
I
-
M
L
L
D
K
N
I
P
I
P
H
I
K
L
I
D
F
G
L
A
H
E
I
E
-
D
G
V
E
F
K
N
I
F
G
T
P
E
F
V
A
P
E
I
V
N
Y
E
P
L
G
L
E
A
D
M
W
S
I
G
V
I
T
Y
I
L
L
S
G
A
S
P
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
75
PsiBlast_CBE
41.33
32%
-77
- C3 -
2CKE
1
DAPK2_HUMAN
A:
[14-219]
--------------
Y
D
I
G
E
E
L
G
S
G
Q
F
A
I
V
K
---
K
C
R
E
K
S
T
G
L
E
Y
A
---
A
K
F
I
K
K
R
Q
S
--
R
A
S
R
R
G
V
S
R
E
E
I
E
R
-
E
V
S
I
L
R
Q
V
L
H
H
N
V
I
T
L
H
D
V
Y
E
N
R
T
D
V
------
V
L
I
L
E
L
V
S
G
G
E
L
F
D
F
L
A
Q
K
E
S
---
L
S
E
E
E
A
T
S
F
I
K
Q
I
L
D
G
V
N
Y
L
H
-
T
K
K
I
A
H
F
D
L
K
P
E
N
I
-
M
L
L
D
K
N
I
P
I
P
H
I
K
L
I
D
F
G
L
A
H
E
I
E
-
D
G
V
E
F
K
N
I
F
G
T
P
E
F
V
A
P
E
I
V
N
Y
E
P
L
G
L
E
A
D
M
W
S
I
G
V
I
T
Y
I
L
L
S
G
A
S
P
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
86
PsiBlast_CBE
40.29
32%
-78
- C3 -
3DFC
1
DAPK1_HUMAN
B:
[13-218]
--------------
Y
D
T
G
E
E
L
G
S
G
K
F
A
V
V
K
---
K
C
R
E
K
S
T
G
L
Q
Y
A
AKF
I
K
--
K
R
R
T
K
--
S
S
R
R
GV-
S
R
E
D
I
E
R
-
E
V
S
I
L
K
E
I
Q
H
P
N
V
I
T
L
H
E
V
Y
E
N
K
T
D
V
------
I
L
I
L
E
L
V
A
G
G
E
L
F
D
F
L
A
E
K
E
S
---
L
T
E
E
E
A
T
E
F
L
K
Q
I
L
N
G
V
Y
Y
L
H
-
S
L
Q
I
A
H
F
D
L
K
P
E
N
I
M
L
L
D
R
N
V
P
K
P
R
I
-
K
I
I
D
F
G
L
A
H
K
I
D
-
F
G
N
E
F
K
N
I
F
G
T
P
E
F
V
A
P
E
I
V
N
Y
E
P
L
G
L
E
A
D
M
W
S
I
G
V
I
T
Y
I
L
L
S
G
A
S
P
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
92
PsiBlast_CBE
40.02
32%
-82
- C3 -
2YAK
1
DAPK1_HUMAN
A:
[13-218]
--------------
Y
D
T
G
E
E
L
G
S
G
Q
F
A
V
V
K
---
K
C
R
E
K
S
T
G
L
Q
Y
A
A
K
F
I
K
--
K
R
R
T
K
--
S
S
R
R
GV-
S
R
E
D
I
E
R
-
E
V
S
I
L
K
E
I
Q
H
P
N
V
I
T
L
H
E
V
Y
E
N
K
T
D
V
------
I
L
I
L
E
L
V
A
G
G
E
L
F
D
F
L
A
E
K
E
S
---
L
T
E
E
E
A
T
E
F
L
K
Q
I
L
N
G
V
Y
Y
L
H
-
S
L
Q
I
A
H
F
D
L
K
P
E
N
I
M
L
L
D
R
N
V
P
K
P
R
I
-
K
I
I
D
F
G
L
A
H
K
I
D
-
F
G
N
E
F
K
N
I
F
G
T
P
E
F
V
A
P
E
I
V
N
Y
E
P
L
G
L
E
A
D
M
W
S
I
G
V
I
T
Y
I
L
L
S
G
A
S
P
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
73
PsiBlast_CBE
39.54
32%
-74
- C3 -
2CKE
1
DAPK2_HUMAN
C:
[14-219]
--------------
Y
D
I
G
E
E
L
G
S
G
Q
F
A
I
V
K
---
K
C
R
E
K
S
T
G
L
E
Y
A
---
A
K
FI
K
K
R
Q
S
--
R
A
S
R
RGV
S
R
E
E
I
E
R
-
E
V
S
I
L
R
Q
V
L
H
H
N
V
I
T
L
H
D
V
Y
E
N
R
T
D
V
------
V
L
I
L
E
L
V
S
G
G
E
L
F
D
F
L
A
Q
K
E
S
---
L
S
E
E
E
A
T
S
F
I
K
Q
I
L
D
G
V
N
Y
L
H
-
T
K
K
I
A
H
F
D
L
K
P
E
N
I
-
M
L
L
D
K
N
I
P
I
P
H
I
K
L
I
D
F
G
L
A
H
E
I
E
-
D
G
V
E
F
K
N
I
F
G
T
P
E
F
V
A
P
E
I
V
N
Y
E
P
L
G
L
E
A
D
M
W
S
I
G
V
I
T
Y
I
L
L
S
G
A
S
P
F
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
94
PsiBlast_CBE
32.60
32%
-67
- C3 -
2Z7S
1
KS6A1_HUMAN
A:
[30-230]
--------------
F
E
L
L
K
V
L
G
Q
G
S
F
G
K
V
F
LVR
K
V
T
R
P
D
S
G
H
L
Y
A
---
M
K
--
V
L
K
----------------------
I
L
A
D
V
N
H
P
F
V
V
K
L
H
Y
A
F
Q
T
E
G
K
L
------
Y
L
I
L
D
F
L
R
G
G
D
L
---
F
T
R
L
S
K
E
V
M
F
T
E
E
D
V
K
F
Y
L
A
E
L
A
L
G
L
D
H
L
H
-
S
L
G
I
I
Y
R
D
L
K
P
E
N
I
-
L
L
D
E
-
E
G
H
I
---
K
L
T
D
F
G
L
S
K
E
------------
G
T
V
E
Y
M
A
P
E
V
V
N
R
Q
G
H
S
H
S
A
D
W
W
S
Y
G
V
L
M
F
E
M
L
T
G
S
L
P
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
96
PsiBlast_CBE
31.16
32%
-68
- C3 -
2Z7Q
1
KS6A1_HUMAN
A:
[30-230]
--------------
F
E
L
L
K
V
L
G
Q
G
S
F
G
K
V
F
L
V
R
K
V
T
R
P
D
S
G
H
L
Y
A
---
M
K
--
V
L
-----------------------
I
L
A
D
V
N
H
P
F
V
V
K
L
H
Y
A
F
Q
T
E
G
K
L
------
Y
L
I
L
D
F
L
R
G
G
D
L
---
F
T
R
L
S
K
E
V
M
F
T
E
E
D
V
K
F
Y
L
A
E
L
A
L
G
L
D
H
L
H
-
S
L
G
I
I
Y
R
D
L
K
P
E
N
I
-
L
L
D
E
-
E
G
H
I
---
K
L
T
D
F
G
L
S
K
E
------------
G
T
V
E
Y
M
A
P
E
V
V
N
R
Q
G
H
S
H
S
A
D
W
W
S
Y
G
V
L
M
F
E
M
L
T
G
S
L
P
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
85
PsiBlast_CBE
28.43
31%
-72
- C3 -
2JAM
3
KCC1G_HUMAN
A:
[6-207]
---------
N
I
R
K
T
F
I
F
M
E
V
L
G
S
G
A
F
S
E
V
F
---
L
V
K
Q
R
L
T
G
K
L
F
A
---
L
K
--
C
I
K
K
----
S
---------
S
L
E
N
E
I
A
V
L
K
K
I
K
H
E
N
I
V
T
L
E
D
I
Y
E
S
T
T
H
Y
------
Y
L
V
M
Q
L
V
S
G
G
E
L
F
D
R
I
--
L
E
R
G
V
Y
T
E
K
D
A
S
L
-
V
I
Q
Q
V
L
S
A
V
K
Y
L
H
-
E
N
G
I
V
H
R
D
L
K
P
E
N
L
-
L
Y
L
T
P
E
E
N
S
K
I
-
M
I
T
D
F
G
L
S
K
-
M
E
-
Q
N
G
I
M
S
T
A
C
G
T
P
G
Y
V
A
P
E
V
L
A
Q
K
P
Y
S
K
A
V
D
C
W
S
I
G
V
I
T
Y
I
L
L
C
G
Y
P
P
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
84
PsiBlast_CBE
26.96
31%
-69
- C3 -
2JAM
3
KCC1G_HUMAN
B:
[4-207]
-------
T
T
N
I
R
K
T
F
I
F
M
E
V
L
G
S
G
A
F
S
E
V
F
---
L
V
K
Q
R
L
T
G
K
L
F
A
---
L
K
--
C
I
K
K
----
S
---------
S
L
E
N
E
I
A
V
L
K
K
I
K
H
E
N
I
V
T
L
E
D
I
Y
E
S
T
T
H
Y
------
Y
L
V
M
Q
L
V
S
G
G
E
L
F
D
R
I
--
L
E
R
G
V
Y
T
E
K
D
A
S
L
-
V
I
Q
Q
V
L
S
A
V
K
Y
L
H
-
E
N
G
I
V
H
R
D
L
K
P
E
N
L
-
L
Y
L
T
P
E
E
N
S
K
I
-
M
I
T
D
F
G
L
S
K
-
M
E
-
Q
N
G
I
M
S
T
A
C
G
T
P
G
Y
V
A
P
E
V
L
A
Q
K
P
Y
S
K
A
V
D
C
W
S
I
G
V
I
T
Y
I
L
L
C
G
Y
P
P
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------