@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-29 )
AISCGQVTSALSPCISYARGNGANPPAACCSGVRSLAGAARSTADKQAACKCIKSAAGGLNAGKAAGIPSKCSVSVPYAISSSVDCSKIR
Atome Classification :
(20 SA)
-------------------------------------------------------------.......--..10-.........----20----.---.------------.-------------------.-----.---------------------...---30.......------.40-----------........50.-----.--..--------.--.------.--------------.60-----------------------.-------------.......--.70......--------------..---80........90-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------AISCGQV--TSA--LSPCISYAR----GN----G---A------------N-------------------P-----P---------------------AAC---CSGVRSLAG------AAR-----------STADKQAACKC-----I--KS--------A--A------G--------------GL------------------------N-------------AGKAAGI--PSKCSVSVP--------------YA---ISSSVDCSKIR--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
94.98
70%
-113
- C6 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
--
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
---
S
------------
G
-------------------
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
------
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
-----
L
--
K
N
--------
A
--
A
------
A
G
VS-----------
G
L
------------------------
N
-------------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
89.53
59%
-116
- C6 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
--
L
A
P
C
L
A
Y
L
R
----
N
T
----
G
------------------------------------
P
-----
L
---------------------
G
R
C
---
C
G
G
V
K
A
L
V
N
------
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
-----
L
--
K
S
--------
A
--
A
G
A
I---
S
--------------
G
I
------------------------
N
-------------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--------------
Y
K
---
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
89.34
47%
-120
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
--
V
R
P
C
L
S
Y
V
Q
----
G
G
--------
P
------------
G
-------------------
P
-----
S
---------------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
------
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
-----
L
--
K
G
--------
I
--
A
------
R
G
IH-----------
N
L
------------------------
N
-------------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--------------
Y
T
---
I
S
L
N
I
D
C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
88.62
70%
-116
- C6 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
--
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
---
S
------------
G
-------------------
P
-----
S
---------------------
A
G
C
---
C
S
G
V
R
S
L
N
N
------
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
-----
L
--
K
N
--------
A
--
A
------
A
G
VS-----------
G
L
------------------------
N
-------------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--------------
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
85.39
49%
-121
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
--
L
A
P
C
I
P
Y
V
R
----
G
G
--------
G
------------
A
-------------------
V
-----
P
---------------------
P
A
C
---
C
N
G
I
R
N
V
N
N
------
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
-----
L
--
K
Q
--------
L
--
S
A
S
V---
P
--------------
G
V
------------------------
N
-------------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--------------
Y
K
---
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
82.61
42%
-129
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
--
L
A
Q
C
I
G
F
L
Q
----
K
G
--------
G
------------
V
-------------------
V
-----
P
---------------------
P
S
C
---
C
T
G
V
K
N
I
L
N
------
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
-----
L
--
K
A
--------
A
--
A
------
G
A
VR-----------
G
I
------------------------
N
-------------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--------------
Y
K
---
I
S
T
S
T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
55.63
32%
-95
- C6 -
1PSY
-
2SS_RICCO
A:
[25-121]
-----------------------------------------------------------------------
K
D
--
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
--
R
---
R
------------
S
T
GEEVLRMPGDENQQQESQ
Q
-----
L
---------------------
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------------
R
D
E
C
Q
C
E
A
-----
I
--
K
Y
--------
I
--
A
E
D
Q
I
Q
Q
G
--------------
Q
L
HGEE
S
E
R
-----------------
V
-------------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--------------
C
M
---
R
Q
-----------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
54.55
24%
-101
- C6 -
1SM7
-
?
A:
[14-101]
------------------------------------------------------------------------
H
--
L
R
A
C
Q
Q
W
I
R
----
Q
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP
S
-------------------
L
-----
R
---------------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------------
D
Q
V
--
C
V
C
PT---
L
--
K
Q
--------
A
--
A
------
K
--------------
S
V
------------------------
R
VQGQHGPFQST
R
I
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
49.46
30%
-102
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------
A
G
C
--
N
--
A
G
Q
--
L
T
V
C
T
G
A
I
A
----
G
-----
G
---
A
------------
R
-------------------
P
-----
T
---------------------
A
A
C
---
C
S
S
L
R
A
Q
Q
G
------
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
-----
V
--
N
S
--------
P
------------------------------------------------------------------
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
--------------
T
----------
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
49.27
24%
-99
- C6 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------
N
P
--
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
---
P
------------
R
-------------------
L
P
W
P
E
L
K
---------------------
R
R
C
---
C
R
E
L
A
D
I
-------------------------
P
A
Y
--
C
R
C
T
A
---
L
--
S
I
--------
L
--
M
------
D
--------------
G
A
I
P
P
G
PDAQL
E
G
R
L
-----------
E
D
LPGCP
R
E
V
Q
---
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
SP3
49.08
12%
-66
- C6 -
1A0P
-
?
?:
[3-292]
-----------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KNLA
E
N
T
L
N
A
Y
--
R
R
D
--
L
S
M
M
V
E
W
L
H
----
H
R
----
G
---
L
------------
T
-------------------
L
-----
A
---------------------
T
A
Q
---
S
D
D
L
Q
A
L
L
A
------
E
R
L
-----------
S
S
A
R
L
L
S
A
V
R
R
-----
L
--
F
Q
--------
Y
--
L
------
Y
R
E
KFREDDPSAHLK
D
L
------------------------
S
-------------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
I
D
Q
P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
T
G
---
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
33
HHSearch
47.53
20%
-112
- C6 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------------
E
M
--
L
N
H
C
G
M
Y
L
M
----
K
N
LGER
S
---
Q
VSPR
M
R
E
E
----
D
-------------------
H
-----
K
---------------------
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------------
E
K
C
M
C
P
A
-----
I
--
M
M
--------
M
--
L
------
N
--------------
E
P
------------------------
M
WIRMR
D
Q
V
-----
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
47.30
21%
-74
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
E
--
L
N
E
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A
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----
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----
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---
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------------
T
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S--------------------
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C
---
C
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A
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Q
H
A
---------------------------
D
F
A
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C
G
Y
K
NS
P
--
W
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--------
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--
S
------
F
--------------
G
V
------------------------
D
-------------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
-----------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
12
SP3
46.97
21%
-70
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------
A
G
C
--
N
--
A
G
Q
--
L
T
V
C
T
G
A
I
A
----
G
G
----
A
---
R
--------------------------------
P
-----
T
---------------------
A
A
C
---
C
S
S
L
R
A
--------------------------
Q
Q
G
C
F
C
Q
F
-----
A
--
K
D
PR------
Y
--
G
------
R
--------------
Y
V
------------------------
N
-------------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
------------------------
T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
44.36
20%
-78
- C6 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
--
L
N
E
C
K
P
A
V
S
----
K
E
----
N
---
P
T-----------
S
-------------------
P
-----
S
---------------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------------
D
F
A
C
L
C
G
Y
-----
K
--
N
S
--------
P
W
-
L
G
S
----
F
--------------
G
V
------------------------
D
-------------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------------
P
-----------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
42.05
16%
-57
- C6 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
--
V
D
R
VN
L
K
P
C
E
Q
H
I
M
----
Q
R
----
I
---
M
------------
G
-------------------
E
-----
Q
EQYDSYDIRSTR
S
S
D
Q
Q
----
Q
R
C
---
C
D
E
L
N
E
M
E
N
TQGC
M
C
E
A
L
-----------
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Q
I
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D
R
L
-----
Q
--
D
R
--------
Q
--
M
------
V
--------------
Q
Q
------------------------
F
-------------
K
R
E
L
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S
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--
P
Q
Q
C
N
F
R
A
P
--------------
Q
R
CDL
D
V
S
G
G
R
C
S
-----------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
40.54
22%
-49
- C6 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
--
L
S
S
C
E
R
Y
L
R
----
Q
S
----
S
---
S
------------
R
-------------------
R
-----
S
T
GEEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
EC
Q
C
E
-
A
I
K
-----------
Y
I
A
E
D
Q
I
Q
Q
G
Q
-----
L
--
H
G
--------
E
--
E
------
S
--------------
E
R
------------------------
V
-------------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
--------------
R
Q
---
T
R
T
N
---------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
37.67
16%
-87
- C6 -
1QPO
-
NADC_MYCTU
A:
[116-284]
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
S
--
V
V
D
A
L
R
A
V
R
----
N
A
---------------------
A
-------------------
P
-----
D
---------------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
------
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
-----
R
--
D
S
RAPT
V
M
L
E
S
--
S
------
G
--------------
G
L
------------------------
S
-------------
L
Q
T
A
A
T
Y
--
A
E
-
T
G
V
D
Y
--------------------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
37.54
33%
-72
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
-----------------------------------------------------------------------
G
Q
--
L
T
V
C
T
G
A
I
A
----
G
G
----
A
----------------
R
-------------------
P
-----
T
---------------------
A
A
C
---
C
S
S
L
R
A
----------------------------
Q
Q
G
C
F
C
-----
Q
F
A
K
D
--------
P
RY
G
------
R
--------------
Y
V
------------------------
N
-------------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
37.09
18%
-69
* C6 *
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------
N
P
--
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
---
P
------------
R
LA
T
Q
E
--------------
M
-----
K
---------------------
A
R
C
---
C
R
Q
L
E
A
I
-------------------------
P
A
Y
--
C
R
C
E
A
---
V
--
R
I
--------
L
--
M
------
D
--------------
G
V
V
T
PSG
Q
H
E
G
RLLQDLPGCP
R
Q
V
Q
R
A
-------------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--------------
H
-----------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AISCGQVTSALSPCISYARGNGANPPAACCSGVRSLAGAARSTADKQAACKCIKSAAGGLNAGKAAGIPSKCSVSVPYAISSSVDCSKIR
42
97.50
100%
-128
- C- -
M042
-
A:
[1-96]
A
I
S
C
G
Q
V
T
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
N
P
P
A
A
C
C
S
G
V
R
S
L
A
G
A
A
R
S
T
A
D
K
Q
A
A
C
K
C
I
K
S
A
A
G
G
L
N
A
G
K
A
A
G
I
P
S
K
C
S
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
R
41
94.62
100%
-126
- C- -
M041
-
A:
[1-96]
A
I
S
C
G
Q
V
T
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
N
P
P
A
A
C
C
S
G
V
R
S
L
A
G
A
A
R
S
T
A
D
K
Q
A
A
C
K
C
I
K
S
A
A
G
G
L
N
A
G
K
A
A
G
I
P
S
K
C
S
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
R
43
93.43
100%
-118
- C- -
M043
-
A:
[1-96]
A
I
S
C
G
Q
V
T
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
N
P
P
A
A
C
C
S
G
V
R
S
L
A
G
A
A
R
S
T
A
D
K
Q
A
A
C
K
C
I
K
S
A
A
G
G
L
N
A
G
K
A
A
G
I
P
S
K
C
S
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
R
39
91.01
100%
-117
- C- -
M039
-
A:
[1-96]
A
I
S
C
G
Q
V
T
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
N
P
P
A
A
C
C
S
G
V
R
S
L
A
G
A
A
R
S
T
A
D
K
Q
A
A
C
K
C
I
K
S
A
A
G
G
L
N
A
G
K
A
A
G
I
P
S
K
C
S
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
R