@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-30 )
AVTCGDVTSAIAPCMSYATGKASAPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFKGISMGNAATIPGKCGVSVSFPINTNVNCNNIH
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10--.........----20--.----.---.---------------------.-----.-----.------------...---30........40-----------........50.--..--..-.-----..60------.-------.---------.---------.----------.....70--........80........90..---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVTCGDV--TSA---IAPCMSYAT----G---K----A---S---------------------A-----P-----S------------AGC---CSGVRTLNGKAS-----------TSADRQAACRC--LK--NL-A-----GSF-------K-------G---------I---------S----------MGNAATI--PGKCGVSVSFPINTNVNCNNIH---------
11
HHSearch
90.16
59%
-120
- C1 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
---
S
---------------------
G
-----
P
-----
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--
L
K
--
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
29
SP3
89.18
59%
-119
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
---
Q
----
G
---
S
---------------------
G
-----
P
-----
S
------------
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
--
L
K
--
N
A
-
A
-----
A
G
V
-------
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
16
HHSearch
86.70
41%
-123
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
---
V
R
P
C
L
S
Y
V
Q
----
G
---
G
--------
P
---------------------
G
-----
P
-----
S
------------
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
--
L
K
--
G
I
-
A
-----
R
G
I
-------
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------
12
HHSearch
85.80
44%
-128
- C1 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
---
L
A
P
C
L
A
Y
L
R
----
N
---
T
----
G
-------------------------------
P
-----
L
------------
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
--
L
K
--
S
A
-
A
-----
G
A
I
-------
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
14
HHSearch
83.76
47%
-129
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
---
L
A
P
C
I
P
Y
V
R
----
G
---
G
----
G
-------------------------
A
-----
V
-----
P
------------
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
--
L
K
--
Q
L
-
S
-----
A
S
V
-------
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
15
HHSearch
81.09
41%
-125
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
---
L
A
Q
C
I
G
F
L
Q
----
K
---
G
----
G
-------------------------
V
-----
V
-----
P
------------
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
--
L
K
--
A
A
-
A
-----
G
A
V
-------
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
36
SP3
56.51
19%
-98
- C1 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
-
A
G
S
V
--
V
D
A
---
L
R
A
V
R
N
A
-----------------------------------------
A
-----
P
-----
D
------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--
R
D
--
S
R
-
A
-----
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
25
HHSearch
55.99
23%
-115
- C1 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
---
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP---------
S
-----
L
-----
R
------------
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
--
C
V
C
PT
L
K
--
Q
A
-
A
-----
K
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------
23
HHSearch
54.96
22%
-163
- C1 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
---
I
----
G
---
P
---------------------
R
-----
L
P
W
P
E
L
K
------------
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
--
L
S
--
I
L
-
M
-----
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
----------------------
24
HHSearch
51.41
22%
-99
- C1 -
1PSY
-
2SS_RICCO
A:
[25-122]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---
S
S
S
--
R
---
R
S
T
GEEVLRMPGDENQQQES--
Q
-----
Q
-----
L
------------
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
--
I
K
--
Y
I
-
A
-----
E
D
Q
-------
I
Q
Q
G
QLH-
G
---------
E
E
S
E
R
-----
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
T
-----------------
34
SP3
50.19
13%
-138
- C1 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
G
----
S
---
Q
---------------------
V
-----
P
-----
E
A
V
L
---------
R
D
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
--
L
Y
--
S
M
-
L
-----
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
17
HHSearch
47.05
24%
-99
- C1 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
---
E
----
N
---
P
T--------------------
S
-----
P
-----
S
------------
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
--
K
N
--
S
P
W
L
-----
G
S
F
---------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
---------------------
2
Fugue
46.47
21%
-82
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
---
E
N---
P
---
T
---------------------
S
-----
P
-----
S
------------
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
--
K
N
--
S
P
-
W
-----
L
G
S
-------
F
-------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
------
A
N
A
P
T
C
-------------
31
SP3
45.93
16%
-92
- C1 -
1QPO
-
NADC_MYCTU
A:
[116-284]
------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
S
---
V
V
D
A
L
R
A
V
R
-------------
N
---
A
---------------------
A
-----
P
-----
D
------------
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
--
R
D
--
S
R
-
A
-----
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
27
HHSearch
45.91
16%
-121
- C1 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
M
----
K
---
N
LGER
S
---
Q
VSPR
M
R
E
E
-------------
D
-----
H
-----
K
------------
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
--
I
M
--
M
M
-
L
-----
N
E
P
-------
M
-------
W
IRMR
D
----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
------------------------
4
Fugue
45.31
20%
-47
- C1 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
---
S
----
S
---
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
------------
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
A
E
D
Q
--
I
Q
Q
G
Q
L
-
H
-----
G
E
E
-------
S
-------
E
---------
R
---------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
R
Q
T
R
T
N
----------------
22
HHSearch
45.29
14%
-120
- C1 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
S
----
T
---
R
T
CGV
G
---
P
---------------------
R
LA
T
Q
E
M
-----
K
------------
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
--
V
R
--
I
L
-
M
-----
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
---------------------
10
Fugue
44.84
18%
-108
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
---
N
----
L
---
G
---------------------
E
-----
R
-----
S
QVSPR
M
R
E
E
D
H
K
Q
L
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
--
I
M
--
M
M
-
L
N
EPMW
I
R
M
-------
R
-------
D
---------
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
S
Q
-------
P
C
Q
M
-----------
26
HHSearch
40.83
16%
-98
- C1 -
3OB4
-
?
A:
[428-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
------------
E
R
C
---
C
N
E
L
N
E
F
E
N
-----------------
N
Q
R
C
M
C
E
A
--
L
Q
--
Q
I
-
M
-----
E
N
Q
S
DRL---
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
----------------------
30
SP3
40.41
19%
-97
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
Q
---
L
T
V
C
T
G
A
I
A
----
G
---
G
----
A
---
R
---------------------------
P
-----
T
------------
A
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
--
Q
F
--
A
K
-
D
-----
P
R
Y
-------
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVTCGDVTSAIAPCMSYATGKASAPSAGCCSGVRTLNGKASTSADRQAACRCLKNLAGSFKGISMGNAATIPGKCGVSVSFPINTNVNCNNIH
46
44.29
100%
-
- C- -
M046
-
A:
[1-93]
A
V
T
C
G
D
V
T
S
A
I
A
P
C
M
S
Y
A
T
G
K
A
S
A
P
S
A
G
C
C
S
G
V
R
T
L
N
G
K
A
S
T
S
A
D
R
Q
A
A
C
R
C
L
K
N
L
A
G
S
F
K
G
I
S
M
G
N
A
A
T
I
P
G
K
C
G
V
S
V
S
F
P
I
N
T
N
V
N
C
N
N
I
H
44
44.29
100%
-
- C- -
M044
-
A:
[1-93]
A
V
T
C
G
D
V
T
S
A
I
A
P
C
M
S
Y
A
T
G
K
A
S
A
P
S
A
G
C
C
S
G
V
R
T
L
N
G
K
A
S
T
S
A
D
R
Q
A
A
C
R
C
L
K
N
L
A
G
S
F
K
G
I
S
M
G
N
A
A
T
I
P
G
K
C
G
V
S
V
S
F
P
I
N
T
N
V
N
C
N
N
I
H
40
44.29
100%
-
- C- -
M040
-
A:
[1-93]
A
V
T
C
G
D
V
T
S
A
I
A
P
C
M
S
Y
A
T
G
K
A
S
A
P
S
A
G
C
C
S
G
V
R
T
L
N
G
K
A
S
T
S
A
D
R
Q
A
A
C
R
C
L
K
N
L
A
G
S
F
K
G
I
S
M
G
N
A
A
T
I
P
G
K
C
G
V
S
V
S
F
P
I
N
T
N
V
N
C
N
N
I
H