@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-30 )
AVANCGQVVSYLAPCISYAMGRVSAPGGGCCSGVRGLNAAAATPADRKTTCTCLKQQASGIGGIKPNLVAGIPGKCGVNIPYAISQGTDCSKVR
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-.--...---.....20---..----.---.------------..-----.---..---------------------30--.........40--------.-----------......-.50-..--....--..60-------.-----------.---.----.----------.-----------...70.--.......80..---......90...------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVANCGQVVS--Y--LAP---CISYAM----GR----V---S------------AP-----G---GG---------------------C---CSGVRGLNAAA--------A-----------TPADRK-TTC-TC--LKQQ--ASGI-------G-----------G---I----K----------P-----------NLVAGI--PGKCGVNIPYA---ISQGTDCSKVR------------------------------------------------------------------
21
HHSearch
94.55
58%
-115
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
--
I
A
P
---
C
I
S
Y
A
R
----
G
Q
----
G
---
S
------------
G
P
-----
S
---
A
G
---------------------
C
---
C
S
G
V
R
S
L
N
N
A
A
--------
R
-----------
T
T
A
D
R
R
-
A
A
C
-
N
C
--
L
K
N
A
--
A
A
G
V
-------
S
-----------
G
---
L
----
N
----------
A
-----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
------------------------------------------------------------------
11
SP3
93.53
57%
-114
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
--
I
A
P
---
C
I
S
Y
A
R
----
G
Q
----
G
---
S
------------
G
P
-----
S
---
A
G
---------------------
C
---
C
S
G
V
R
S
L
N
N
A
A
--------
R
-----------
T
T
A
D
R
R
-
A
A
C
-
N
C
--
L
K
N
A
--
A
A
G
V
-------
S
-----------
G
---
L
----
N
----------
A
-----------
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
------------------------------------------------------------------
22
HHSearch
92.19
53%
-119
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
--
N
--
L
A
P
---
C
L
A
Y
L
R
----
N
T
----
G
-----------------
P
-----
L
---
G
R
---------------------
C
---
C
G
G
V
K
A
L
V
N
S
A
--------
R
-----------
T
T
E
D
R
Q
-
I
A
C
-
T
C
--
L
K
S
A
--
A
G
A
I
-------
S
-----------
G
---
I
----
N
----------
L
-----------
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
---
I
S
P
S
T
D
C
S
K
V
Q
------------------------------------------------------------------
24
HHSearch
88.87
49%
-114
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
--
S
--
L
A
P
---
C
I
P
Y
V
R
----
G
G
--------
G
------------
A
V
-----
P
---
P
A
---------------------
C
---
C
N
G
I
R
N
V
N
N
L
A
--------
R
-----------
T
T
P
D
R
Q
-
A
A
C
-
N
C
--
L
K
Q
L
--
S
A
S
V
-------
P
-----------
G
---
V
----
N
----------
P
-----------
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
---
I
S
A
S
T
N
C
A
T
V
K
------------------------------------------------------------------
25
HHSearch
88.55
43%
-120
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
--
N
--
L
A
Q
---
C
I
G
F
L
Q
----
K
G
--------
G
------------
V
V
-----
P
---
P
S
---------------------
C
---
C
T
G
V
K
N
I
L
N
S
S
--------
R
-----------
T
T
A
D
R
R
-
A
V
C
-
S
C
--
L
K
A
A
--
A
G
A
V
-------
R
-----------
G
---
I
----
N
----------
P
-----------
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
---
I
S
T
S
T
N
C
N
S
I
N
------------------------------------------------------------------
26
HHSearch
87.46
46%
-113
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
--
L
--
V
R
P
---
C
L
S
Y
V
Q
----
G
G
--------
P
------------
G
P
-----
S
---
G
Q
---------------------
C
---
C
D
G
V
K
N
L
H
N
Q
A
--------
R
-----------
S
Q
S
D
R
Q
-
S
A
C
-
N
C
--
L
K
G
I
--
A
R
G
I
-------
H
-----------
N
---
L
----
N
----------
E
-----------
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
---
I
S
L
N
I
D
C
S
R
V
-------------------------------------------------------------------
18
SP3
59.95
22%
-106
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--
G
S
V
V
D
--
A
--
L
R
A
---
V
R
N
A
-----------------------------
A
P
-----
D
---
L
P
---------------------
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
--------
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
-
T
A
V
-
Q
R
--
R
D
S
R
--
A
P
T
V
M
L
E
S
S
--
G
-----------
G
---
L
----
S
----------
L
-----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M----------------------------------------------------------
19
SP3
58.86
22%
-106
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--
G
S
V
V
D
--
A
--
L
R
A
---
V
R
N
A
-----------------------------
A
P
-----
D
---
L
P
---------------------
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
--------
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
-
T
A
V
-
Q
R
--
R
D
S
R
--
A
P
T
V
M
L
E
S
S
--
G
-----------
G
---
L
----
S
----------
L
-----------
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M----------------------------------------------------------
34
HHSearch
52.95
19%
-141
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
P
S
---
C
R
W
Y
V
T
S
R
TC
G
I
----
G
---
P
------------
R
L
P
W
P
E
L
K
---
R
R
---------------------
C
---
C
R
E
L
A
D
I
---------------------------
P
A
Y
-
C
R
C
-
T
A
--
L
S
I
L
--
M
D
G
A
-------
I
P
P
G
PDAQ----
L
E
G
R
L
----
E
D
LPGCP
R
E
V
Q
R
-----------
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
----------------------------------------------------------------------------------
35
HHSearch
50.28
23%
-132
- C2 -
1SM7
-
?
A:
[14-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--
L
R
A
---
C
Q
Q
W
I
R
----
Q
Q
----
L
AG
S
P
F
S
E
NQWGPQQGP
S
L
-----
R
---
E
Q
---------------------
C
---
C
N
E
L
Y
Q
E
---------------------------
D
Q
V
---
C
-
V
C
PT
L
K
Q
A
--
A
K
S
V
-------
R
VQ---------
G
Q--
H
----
G
PFQST
R
I
---
Y
-----------
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------
20
SP3
49.68
14%
-116
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPG
Q
A
F
Q
----
V
P
--
A
--
L
P
A
---
C
R
P
L
L
R
L
Q
C
-
N
G
----
S
---
Q
------------
V
P
-----
E
A
V
L
R
D
---------------------
C
---
C
Q
Q
L
A
H
I
---------------------------
S
E
W
-
C
R
C
-
G
A
--
L
Y
S
M
--
L
D
S
M
Y
K
E
HGAF
P
-----------
R
---
C
----
R
R
E
V
V
------
K
-----------
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
-----
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA---------------------------------------------------------
3
Fugue
48.80
25%
-97
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
--
Q
--
L
T
V
---
C
T
G
A
I
A
----
G
G
--------
A
------------
R
P
-----
T
---
A
A
---------------------
C
---
C
S
S
L
R
------------------------------
A
Q
-
Q
G
C
-
F
C
--
Q
F
A
K
--
D
P
R
Y
-------
G
-----------
R
Y--
V
----
N
----------
S
-----------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
T
----------
C
H
---------------------------------------------------------------------
4
Fugue
48.18
21%
-86
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQG
D
S
S
S
C
E
R
Q
V
D
R
V
N
--
L
K
P
---
C
E
Q
H
I
M
----
Q
R
----
I
---
M
------------
G
E
-----
Q
---
E
Q
YDSYDIRSTR
S
S
D
Q
Q
Q
R
----
C
---
C
D
E
L
N
E
M
---------------------------
E
N
T
-
Q
G
C
-
M
C
--
E
A
L
Q
--
Q
I
M
E
-------
N
-----------
Q
---
C
----
D
----------
R
LQDRQMV
Q
Q
F
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
R
CDL
D
V
S
G
G
R
C
S
---------------------------------------------------------------------
31
HHSearch
46.05
18%
-104
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
--
L
N
H
---
C
G
M
Y
L
M
----
K
N
LGER
S
---
Q
VSPR
M
R
E
E
----
D
H
-----
K
---
Q
L
---------------------
C
---
C
M
Q
L
K
N
L
D
---------------------------
E
K
-
C
M
C
-
P
A
--
I
M
M
M
--
L
N
E
P
-------
M
W----------
I
---
R
MR
D
Q
V
----------
M
-----------
S
M
A
H
N
L
--
P
I
E
C
N
L
M
------------------------------------------------------------------------------------
36
HHSearch
45.63
20%
-59
- C2 -
3OB4
-
?
A:
[428-485]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
E
R
---------------------
C
---
C
N
E
L
N
E
F
E
-------------------------
N
N
Q
R
-
C
M
C
-
E
A
--
L
Q
Q
I
--
M
E
N
Q
S
DRL---
Q
-----------
G
---
R
----
Q
Q
E
Q
Q
F
-----
K
-----------
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
----------------------------------------------------------------------------------
9
Fugue
45.14
15%
-79
- C2 -
3PM6
-
ALF_COCIM
A:
[10-302]
--------------------------------------------------------------LKSN
R
A
L
P
L
L
T
F
A
R
T
H
SFAI
P
A
I
C
V
YN
L
E
G
I
L
A
I
I
R
A
A
E
H
K
R
S
P
A
M
I
L
L
F
P
W
A
I
Q
Y
ADS
L
L
V
R
T
A
A
S
A
C
R
A
AS
V
P
I
T
L
H
L
D
HAQD
P
E
I
I
K
R
A
A
D
LSPGFD
S
I
M
VDMSHFS
K
E
E
N
L
R
L
T
R
E
L
V
A
--
Y
--
C
N
A
R
G
I
A
T
E
A
E
P
----
G
R
----
I
---
E
------------
G
G
-----
E
---
D
G
---------------------
V
----
Q
D
T
V
D
L
E
G
V
L
--------
T
-----------
T
P
E
E
S
E
-
E
F
V
A
T
G
--
I
N
W
L
--
A
P
A
F
-------
G
NVHGNYGPRGV
Q
---
L
----
D
----------
Y
-----------
E
R
L
Q
R
I
--
N
E
A
V
G
E
R
V
G
L
V
---
L
H
G
A
D
P
F
T
K
E
I
F
E
K
C
I
E
R
GVA
K
V
N
V
N
RAV
N
N
E
Y
V
K
V
M
R
E
KAGSLP
I
T
R
L
H
E
E
V
T
N
A
M
Q
A
A
V
E
K
I
M
D
M
I
DSTGKAEFM
2
Fugue
45.05
25%
-85
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
D
--
E
--
L
N
E
---
C
K
P
A
V
S
----
K
E
N---
P
---
T
------------
S
P
-----
S
---
Q
P
---------------------
C
---
C
T
A
L
Q
---------------------------
H
A
D
F
A
-
C
L
C
-
G
Y
--
K
N
S
P
--
W
L
G
S
-------
F
-----------
G
---
V
----
D
----------
P
-----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
---------
P
T
C
----------------------------------------------------------------------
6
Fugue
44.98
19%
-57
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
------------------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
V
Q
--
R
KD
L
S
S
---
C
E
R
Y
L
R
----
Q
S
----
S
---
S
------------
R
R
-----
S
---
T
G
EEVLRMPGDENQQQESQQL
Q
Q
C
---
C
N
Q
V
K
Q
V
R
D
E
C
--------
Q
-----------
C
E
A
I
K
Y
-
I
A
E
-
D
Q
--
I
Q
Q
G
QL
H
G
E
E
-------
S
-----------
E
---
R
----
V
----------
A
-----------
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
C
M
R
Q
---
T
R
T
N
-------------------------------------------------------------------------
27
HHSearch
44.54
22%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
L
C
G
M
S
Q
D
--
E
--
L
N
E
---
C
K
P
A
V
S
----
K
E
----
N
---
P
T-----------
S
P
-----
S
---
Q
P
---------------------
C
---
C
T
A
L
Q
H
A
---------------------------
D
F
A
-
C
L
C
-
G
Y
--
K
N
S
P
W
-
L
G
S
F
-------------------
G
---
V
----
D
----------
P
-----------
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
---------------------------------------------------------------------------------
10
Fugue
44.08
18%
-54
- C2 -
4HLB
-
?
A:
[21-115]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
D
R
F
T
A
--
F
--
E
E
E
---
L
L
A
R
Y
A
----
D
K
-------------------------------------------------------------
G
I
R
S
V
D
V
A
A
YAKGIDI
V
F
-----------
V
A
A
D
R
K
M
T
R
A
-
E
F
--
S
A
I
A
--
S
R
S
I
-------
R
-----------
E
---
L
----
K
----------
E
-----------
R
F
G
F
D
K
--
D
V
P
I
G
A
V
L
D
Y
K
---
K
D
A
A
T
D
T
R
T
R
F
VLKLR-------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVANCGQVVSYLAPCISYAMGRVSAPGGGCCSGVRGLNAAAATPADRKTTCTCLKQQASGIGGIKPNLVAGIPGKCGVNIPYAISQGTDCSKVR
39
44.25
100%
-1
- C- -
M039
-
A:
[2-94]
A
V
A
N
C
G
Q
V
V
S
Y
L
A
P
C
I
S
Y
A
M
G
R
V
S
A
P
G
G
G
C
C
S
G
V
R
G
L
N
A
A
A
A
T
P
A
D
R
K
T
T
C
T
C
L
K
Q
Q
A
S
G
I
G
G
I
K
P
N
L
V
A
G
I
P
G
K
C
G
V
N
I
P
Y
A
I
S
Q
G
T
D
C
S
K
V
R
46
42.44
100%
3
- C- -
M046
-
A:
[2-94]
A
V
A
N
C
G
Q
V
V
S
Y
L
A
P
C
I
S
Y
A
M
G
R
V
S
A
P
G
G
G
C
C
S
G
V
R
G
L
N
A
A
A
A
T
P
A
D
R
K
T
T
C
T
C
L
K
Q
Q
A
S
G
I
G
G
I
K
P
N
L
V
A
G
I
P
G
K
C
G
V
N
I
P
Y
A
I
S
Q
G
T
D
C
S
K
V
R
44
41.00
100%
5
- C- -
M044
-
A:
[2-94]
A
V
A
N
C
G
Q
V
V
S
Y
L
A
P
C
I
S
Y
A
M
G
R
V
S
A
P
G
G
G
C
C
S
G
V
R
G
L
N
A
A
A
A
T
P
A
D
R
K
T
T
C
T
C
L
K
Q
Q
A
S
G
I
G
G
I
K
P
N
L
V
A
G
I
P
G
K
C
G
V
N
I
P
Y
A
I
S
Q
G
T
D
C
S
K
V
R