@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-30 )
VVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGGFPAVDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10........----20---.----.---.--.-----------.---------------.-----------..--------------------.30.......-.40.-----------.......50.--.......60-----.------.--------------.---.-----.--------.----------.-----..70..--......80........90.......-----------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVQCGQV--TQ--LMAPCMPYLS----G----A----P---G--M-----------T---------------P-----------YG--------------------ICCNSLGVLN-QLAA-----------STADRVAACN--CVKAAASG------G------F--------------P---A-----V--------D----------F-----SRAAAL--PAACGLAINFAVTPNMDCNQVTDEP-----------------
22
HHSearch
95.48
40%
-154
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
L
A
P
C
L
A
Y
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----
N
----
T
----
G
----------------------------------
P
-----------
L
G
--------------------
R
C
C
G
G
V
K
A
L
V
-
N
S
A
R
-----------
T
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E
D
R
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C
T
--
C
L
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A
A
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-------
A
------
I
--------------
S
---
G
-----
I
--------
N
----------
L
-----
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
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P
S
T
D
C
S
K
V
Q
--------------------
25
HHSearch
91.46
36%
-155
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
--------
P
--------------
G
---------------
P
-----------
S
G
--------------------
Q
C
C
D
G
V
K
N
L
H
-
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
--
C
L
K
G
I
A
R
-------
G
------
I
--------------
H
---
N
-----
L
--------
N
----------
E
-----
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
---------------------
21
HHSearch
91.26
40%
-150
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
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----
Q
----
G
---
S
--------------
G
---------------
P
-----------
S
A
--------------------
G
C
C
S
G
V
R
S
L
N
-
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
--
C
L
K
N
A
A
A
-------
G
------
V
--------------
S
---
G
-----
L
--------
N
----------
A
-----
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
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T
S
T
D
C
S
R
V
N
--------------------
23
HHSearch
89.37
40%
-156
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
----
G
------------------
A
---------------
V
-----------
P
P
--------------------
A
C
C
N
G
I
R
N
V
N
-
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
--
C
L
K
Q
L
S
A
-------
S
------
V
--------------
P
---
G
-----
V
--------
N
----------
P
-----
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------
11
SP3
86.62
37%
-149
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
----
G
---
S
--
G
---------------------------
P
-----------
S
A
--------------------
G
C
C
S
G
V
R
S
L
N
-
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
--
C
L
K
N
A
A
A
G
-------------
V
--------------
S
---
G
-----
L
--------
N
----------
A
-----
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------
26
HHSearch
79.42
32%
-147
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
----
G
------------------
V
---------------
V
-----------
P
P
--------------------
S
C
C
T
G
V
K
N
I
L
-
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
--
C
L
K
A
A
A
G
-------
A
------
V
--------------
R
---
G
-----
I
--------
N
----------
P
-----
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
--------------------
39
HHSearch
69.82
25%
-147
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-106]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
L
P
A
C
R
P
L
L
R
----
L
----
Q
C
N
--
G
---
S
--
Q
-----------
V
---------------
P
E
A
V
--------
L
R
--------------------
D
C
C
Q
Q
L
A
H
I
--------------------
S
E
W
C
R
C
G
--
A
L
Y
S
M
L
D
S
------
M
Y
K
E
HGA
F
--------------
P
---
R
CR
R
E
-
V
--------
V
----------
K
-----
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
-------------------------------
3
Fugue
58.75
13%
-101
- C2 -
4HR1
-
?
A:
[3-120]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------FN
G
A
Q
T
V
I
Q
K
--
I
S
--
W
L
R
T
A
I
A
F
L
K
----
G
----------------
Y
M
----------
E
---------------
T
-----------
T
G
--------------------
A
T
K
K
E
L
E
Q
V
E
-
K
L
K
E
-----------
R
V
D
E
I
A
T
A
V
N
W
D
V
Y
A
Q
Y
A
R
G
------
D
------
F
--------------
N
---
L
-----
L
--------
S
----------
D
-----
D
E
Y
K
E
I
--
Q
K
A
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L
V
L
E
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Q
I
I
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E
M
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V
G
L
A
Q
GQMGT
L
K
I
S
D
Y
L
D
S
L
D
S
37
HHSearch
58.55
24%
-161
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
----
G
---
P
--
R
-----------
L
---------------
P
W
P
E
L
-------
K
R
--------------------
R
C
C
R
E
L
A
D
I
--------------------
P
A
Y
C
R
C
T
--
A
L
S
I
L
M
D
G
------
A
------
I
P
P
G
PDA--------
Q
---
L
E
G
R
--
L
--------
E
D
LPGCP
R
E
V
Q
R
-----
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
--------------------------------
2
Fugue
58.29
30%
-112
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
---
P
--
T
-----------
S
---------------
P
-----------
S
Q
--------------------
P
C
C
T
A
L
--------------------
Q
H
A
D
F
A
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L
C
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--
Y
K
N
S
P
W
L
G
------
S
------
F
--------------
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---------
V
--------
D
----------
P
-----
E
L
A
S
A
L
--
P
K
Q
C
G
------
L
A
N
A
P
T
C
------------------------
33
HHSearch
57.78
24%
-142
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
L
R
A
C
Q
Q
W
I
R
----
Q
----
Q
----
L
AG
S
P
--
F
S
E
NQWGPQQGP
S
---------------
L
-----------
R
E
--------------------
Q
C
C
N
E
L
Y
Q
E
--------------------
D
Q
V
C
V
C
P
--
T
L
K
Q
A
A
K
S
------
V
------
R
V-------------
Q
---
G
-----
Q
HGPFQST
R
I
----------
Y
-----
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
---------------------------------
40
HHSearch
56.80
20%
-129
- C2 -
2LVF
-
?
A:
[16-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
L
S
H
C
R
M
Y
M
R
Q
Q
M
E
E
----
S
----
T
---
Y
--
Q
-----------
T
MPRRGMEP-------
H
-----------
M
S
--------------------
E
C
C
E
Q
L
E
G
M
--------------------
D
E
S
C
R
C
E
--
G
L
R
M
M
M
R
M
M
Q
Q
K
EM
Q
------
P
--------------
R
---
G
E
Q
M
R
-
R
--------
M
----------
M
-----
R
L
A
E
N
I
--
P
S
R
C
N
L
S
-----------------------------------
27
HHSearch
56.67
32%
-115
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
L
N
E
C
K
P
A
V
S
----
K
----
E
----
N
---
P
--
T
-----------
S
---------------
P
-----------
S
Q
--------------------
P
C
C
T
A
L
Q
H
A
--------------------
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F
A
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L
C
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--
Y
K
N
S
P
W
L
G
------
S
------
F
------------------
G
-----
V
--------
D
----------
P
-----
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
--------------------------------
4
Fugue
55.42
19%
-95
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
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VQ
R
K
--
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L
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Y
L
R
----
Q
----
S
----
S
---
S
--
R
-----------
R
---------------
S
-----------
T
G
EEVLRMPGDENQQQESQQL
Q
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
C
-----------
E
A
I
K
Y
I
A
E
D
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--
I
Q
Q
G
Q
L
H
G
------
E
------
E
--------------
S
---
E
-----
R
--------
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----------
A
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A
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E
I
--
V
S
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C
G
V
R
C
M
R
Q
T
R
T
N
---------------------------
34
HHSearch
53.97
21%
-115
- C2 -
1PSY
-
2SS_RICCO
A:
[25-116]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
S
S
C
E
R
Y
L
R
----
Q
----
S
S
S
R
-
R
---
S
T
G
E
-----------
E
VLRMPGDENQQQESQ
Q
-----------
L
Q
--------------------
Q
C
C
N
Q
V
K
Q
V
--------------------
R
D
E
C
Q
C
E
--
A
I
K
Y
I
A
E
D
------
Q
------
I
Q
Q
G
QL---------
H
---
G
EE
S
E
-
R
--------
V
----------
A
-----
Q
R
A
G
E
I
--
V
S
S
C
G
V
------------------------------------
32
HHSearch
51.31
21%
-144
* C2 *
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
----
G
---
P
--
R
-----------
L
---------------
A
T
Q
E
M
-------
K
A
--------------------
R
C
C
R
Q
L
E
A
I
--------------------
P
A
Y
C
R
C
E
--
A
V
R
I
L
M
D
G
------
V
------
V
T
PSG
Q
H
E
G
RLLQDL
P
---
G
CP---
R
Q
V
Q
R
----
A
----------
F
-----
A
P
K
L
V
T
--
E
V
E
C
N
L
A
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I
H
--------------------------------
38
HHSearch
51.13
13%
-120
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
L
K
P
C
E
Q
H
I
M
----
Q
----
R
I
MG-
E
QE-
Q
--
Y
-----------
D
---------------
S
YDIRSTR
S
S
D
Q
Q
Q
--------------------
R
C
C
D
E
L
N
E
M
E
------------------
N
T
Q
G
C
M
C
E
--
A
L
Q
Q
I
M
E
N
------
Q
------
C
--------------
D
RLQ
D
-----
R
--------
Q
----------
M
V
Q
Q
F
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
---------------------------------
36
HHSearch
46.04
22%
-143
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
L
N
H
C
G
M
Y
L
M
----
K
----
N
LGER
S
---
Q
--
V
SPR
M
R
E
E
----
D
---------------
H
-----------
K
Q
--------------------
L
C
C
M
Q
L
K
N
L
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--------------------
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K
C
M
C
P
--
A
I
M
M
M
L
N
-------
E
------
P
--------------
M
---
W
IRMR
D
Q
--------
V
----------
M
-----
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-----------------------------------
35
HHSearch
43.59
20%
-102
- C2 -
3OB4
-
?
A:
[428-485]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
--------------------
R
C
C
N
E
L
N
E
F
E
------------------
N
N
Q
R
C
M
C
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--
A
L
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Q
I
M
E
N
------
Q
S
DR---
L
--------------
Q
---
G
-----
R
--------
Q
Q
E
Q
Q
F
-----
K
-----
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
---------------------------------
14
SP3
41.51
12%
-130
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
V
D
A
L
R
A
V
R
----
N
----
A
----
A
---
P
--
D
-----------
L
---------------
P
-----------
C
E
--------------------
V
E
V
D
S
L
E
Q
L
D
-
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
--
R
R
D
S
R
A
P
T
------
V
------
M
L
E
S
S
----------
G
---
G
-----
L
--------
S
----------
L
-----
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
---
A
L
T
H
S
V
R
VL
D
I
G
L
D
M---------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VVQCGQVTQLMAPCMPYLSGAPGMTPYGICCNSLGVLNQLAASTADRVAACNCVKAAASGGFPAVDFSRAAALPAACGLAINFAVTPNMDCNQVTDEP
43
97.94
100%
-153
- C- -
M043
-
A:
[1-127]
V
V
Q
C
G
Q
V
T
Q
L
M
A
P
C
M
P
Y
L
S
G
A
P
G
M
T
P
Y
G
I
C
C
N
S
L
G
V
L
N
Q
L
A
A
S
T
A
D
R
V
A
A
C
N
C
V
K
A
A
A
S
G
G
F
P
A
V
D
F
S
R
A
A
A
L
P
A
A
C
G
L
A
I
N
F
A
V
T
P
N
M
D
C
N
Q
V
T
D
E
P
46
95.50
100%
-161
- C- -
M046
-
A:
[1-98]
V
V
Q
C
G
Q
V
T
Q
L
M
A
P
C
M
P
Y
L
S
G
A
P
G
M
T
P
Y
G
I
C
C
N
S
L
G
V
L
N
Q
L
A
A
S
T
A
D
R
V
A
A
C
N
C
V
K
A
A
A
S
G
G
F
P
A
V
D
F
S
R
A
A
A
L
P
A
A
C
G
L
A
I
N
F
A
V
T
P
N
M
D
C
N
Q
V
T
D
E
P
42
59.75
100%
-44
- C- -
M042
-
A:
[2-98]
V
V
Q
C
G
Q
V
T
Q
L
M
A
P
C
M
P
Y
L
S
G
A
P
G
M
T
P
Y
G
I
C
C
N
S
L
G
V
L
N
Q
L
A
A
S
T
A
D
R
V
A
A
C
N
C
V
K
A
A
A
S
G
G
F
P
A
V
D
F
S
R
A
A
A
L
P
A
A
C
G
L
A
I
N
F
A
V
T
P
N
M
D
C
N
Q
V
T
D
E
P