@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-30 )
AITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS
Atome Classification :
(20 SA)
-------------------------------------------------------------.......--..10.......----------------------.20---.----.------------.-------------------..----.---...30........40----------.........50..--..-....-------60------.---------.---------.---------------......70--.........80......----..90.-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------AITCGQV--GSAIAPCISYV----------------------TG----R----G------------G-------------------LT----Q---GCCNGVKGLNNAAR-----------TTADRQAACRCLK--TL-AGTI-------K-------S---------L---------N---------------LGAAAGI---PGKCGVNVGFPISLSTD----CSKVS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
91.89
64%
-140
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
I
A
P
C
I
S
Y
A
----------------------
R
G
----
Q
----
G
------------
S
G------------------
P
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
---------
N
---------------
A
G
N
A
A
S
I
---
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
----
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
88.47
64%
-141
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
I
A
P
C
I
S
Y
A
----------------------
R
G
----
Q
----
G
------------
S
G------------------
P
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
--
N
A
-
A
A
G
V
-------
S
-------
G
---------
L
---------
N
---------------
A
G
N
A
A
S
I
---
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
----
C
S
R
V
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
87.82
54%
-151
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
S
L
A
P
C
I
P
Y
V
----------------------
R
G
----
G
----
G
------------
A
-------------------
V
P
----
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
--
Q
L
-
S
A
S
V
-------
P
-------
G
---------
V
---------
N
---------------
P
N
N
A
A
A
L
---
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
----
C
A
T
V
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
86.94
60%
-142
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
N
L
A
P
C
L
A
Y
L
----------------------
R
N
----
T
----
G
--------------------------------
P
L
----
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
--
S
A
-
A
G
A
I
-------
S
-------
G
---------
I
---------
N
---------------
L
G
K
A
A
G
L
---
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
----
C
S
K
V
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
84.43
53%
-152
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
--------------------------------------------------------------
I
D
C
G
H
V
--
D
S
L
V
R
P
C
L
S
Y
V
----------------------
Q
G
----
G
----
P
------------
G
-------------------
P
S
----
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
--
G
I
-
A
R
G
I
-------
H
-------
N
---------
L
---------
N
---------------
E
D
N
A
R
S
I
---
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
----
C
S
R
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
82.79
46%
-146
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
N
L
A
Q
C
I
G
F
L
----------------------
Q
K
----
G
----
G
------------
V
-------------------
V
P
----
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
--
A
A
-
A
G
A
V
-------
R
-------
G
---------
I
---------
N
---------------
P
N
N
A
E
A
L
---
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
----
C
N
S
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
59.50
25%
-175
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
----------------------
T
S
R
TCG
I
----
G
------------
P
RLP
W
P
E
-------------
L
K
----
R
---
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
--
I
L
-
M
D
G
A
-------
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
-----
R
G
F
A
A
T
L
VT-
E
A
E
C
N
L
A
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
52.46
15%
-161
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
A
L
P
A
C
R
P
L
L
----------------------
R
L
Q
C
N
-
G
----
S
------------
Q
-------------------
V
P
E
A
V
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
--
S
M
-
L
D
S
M
Y
K
E
HGAF
P
-------
R
---------
C
---------
R
R
E
V
V
-----------
K
L
T
A
A
S
I
---
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
----
G
A
Y
V
C
K
D
V
A
A
YPDA--------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
51.32
17%
-173
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-105]
-----------------------------------------------------------------------
P
A
L
P
A
C
R
P
L
L
----------------------
R
L
----
Q
C
N
--
G
------------
S
QVP
E
A
--------------
V
L
----
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
--
S
M
-
L
D
S
M
-------
Y
K
E
H-----GAFPRCR
R
E
V
---------
V
---------------
K
L
T
A
A
S
I
---
T
A
V
C
R
L
P
I
V
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
50.64
27%
-109
- C2 -
1PSY
-
2SS_RICCO
A:
[25-119]
-----------------------------------------------------------------------
K
D
L
S
S
C
E
R
Y
L
----------------------
R
Q
----
S
S
S
--
R
R
-----------
S
T
GEEVLRMPGDENQQQESQ
Q
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
--
Y
I
-
A
E
D
Q
-------
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
--
V
---------------
A
Q
R
A
G
E
I
---
V
S
S
C
G
V
R
C
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
49.82
21%
-130
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
----------------------
R
Q
----
Q
LAG
S
P
F
S
E
NQWGPQQGP
S
-------------------
L
R
----
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
--
Q
A
-
A
K
S
V
-------
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
---------------
Y
Q
I
A
K
N
L
---
P
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
46.90
20%
-118
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
--------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
E
L
N
E
C
K
P
A
V
----------------------
S
K
----
E
----
N
PT----------
S
-------------------
P
S
----
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
--
S
P
W
L
G
S
--------
F
-------
G
---------
V
---------
D
---------------
P
E
L
A
S
A
L
---
P
K
Q
C
G
L
A
N
A
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
45.89
18%
-141
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------------
E
M
L
N
H
C
G
M
Y
L
----------------------
M
K
----
N
LGER
S
------------
Q
VSPR
M
R
E
E
D
----------
H
K
----
Q
---
L
C
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
--
M
M
-
L
N
E
P
-------
M
W------
I
RMR
D
-----
Q
---------
V
---------------
M
S
M
A
H
N
L
---
P
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
43.42
17%
-148
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
----------------------
S
T
----
R
T
CGV
G
------------
P
RLA
T
Q
E
-------------
M
K
----
A
---
R
C
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
--
I
L
-
M
D
G
V
-------
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
---------------
F
A
P
K
L
V
T
---
E
V
E
C
N
L
A
T
I
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
41.73
22%
-71
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
D
L
S
S
C
E
R
Y
L
R
Q
S
S
S
R
R
S
T
GEEVLRMPGDENQ
Q
Q
----
E
----
S
------------
Q
-------------------
Q
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
-----------
C
E
A
I
K
Y
I
A
E
D
Q
I
Q
Q
G
Q
L
-
H
G
E
E
-------
S
-------
E
---------
R
---------
V
---------------
A
Q
R
A
G
E
I
---
V
S
S
C
G
V
R
-----
C
M
R
Q
T
----
R
T
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
40.49
20%
-99
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
E
L
N
E
C
K
P
A
V
----------------------
S
K
----
E
----
N
PT----------
S
-------------------
P
S
----
Q
---
P
C
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
K
N
--
S
P
-
W
L
G
S
-------
F
-------
G
---------
V
---------
D
---------------
P
E
L
A
S
A
L
---
P
K
Q
C
G
L
A
N
------
A
P
T
----
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
38.89
16%
-103
- C2 -
3OB4
-
?
A:
[427-485]
---------------------------------------------------------------------------------------------------------------------------------------------------
H
Q
----
E
---
R
C
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
Q
--
Q
I
-
M
E
N
Q
S
DRL---
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
----------
K
R
E
L
R
N
L
---
P
Q
Q
C
G
L
R
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
SP3
36.09
14%
-79
- C2 -
1B0A
-
FOLD_ECOLI
A:
[2-288]
-----------------------------------------------------AAKIID
G
K
T
I
-
A
Q
Q
V
--
R
S
E
V
A
Q
K
V
Q
A
R
----------------------
I
A
----
A
----
G
------------
L
-------------------
R
A
----
P
-------
G
L
A
V
V
--
L
V
G
-----------
S
N
P
A
S
Q
I
Y
V
A
S
K
R
--
K
A
-
C
E
E
V
---------------
G
---------
F
---------
V
SR
S
Y
D
L
P
ETTS
E
A
E
L
L
E
L
I
D
T
L
N
A
D
N
T
I
D
G
I
L
V
Q
L
P
L
P
A
G
I
D
N
V
K
V
L
E
R
I
H
PDKDVDGFH
P
Y
N
V
G
R
L
C
Q
RAPRLRP
C
T
P
R
G
I
V
T
L
L
E
R
Y
NIDTFG
L
N
A
V
V
IGASNIV
G
R
P
M
S
M
E
L
L
L
A
GCT
T
T
V
T
H
RFTKN
L
R
H
H
V
E
N
AD
L
L
I
V
A
VGKPGFIPGDWIKEG
A
I
V
I
D
V
G
I
N
R
L
ENG
K
V
V
G
DVV
F
E
D
A
A
K
R
AS
Y
I
T
P
VPGG
V
G
P
M
T
V
A
T
L
I
E
N
T
L
Q
A
C
V
EYHDPQDE
20
SP3
34.99
15%
-106
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
S
V
V
D
A
L
R
A
V
----------------------
R
N
----
A
----
A
------------
P
-------------------
D
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
--
S
R
-
A
P
T
V
M
L
E
S
S
--
G
-------
G
---------
L
---------
S
---------------
L
Q
T
A
A
T
Y
----
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
----
T
H
S
V
R
VL
D
I
G
L
D
M---------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
32.14
23%
-79
- C2 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
----------------------------------------------------------------------
A
S
Q
L
A
V
C
A
S
A
I
----------------------
L
S
----
G
----
A
------------
K
-------------------
P
S
----
G
---
E
C
C
G
N
L
R
A
----------------------
Q
Q
G
C
F
C
Q
Y
--
A
K
-
D
P
T
Y
G
------
Q
-------
Y
---------
I
---------
R
---------------
S
P
H
A
R
D
T
---
L
T
S
C
G
L
A
V
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKSLNLGAAAGIPGKCGVNVGFPISLSTDCSKVS
44
97.51
100%
-162
- C- -
M044
-
A:
[1-96]
A
I
T
C
G
Q
V
G
S
A
I
A
P
C
I
S
Y
V
T
G
R
G
G
L
T
Q
G
C
C
N
G
V
K
G
L
N
N
A
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
T
L
A
G
T
I
K
S
L
N
L
G
A
A
A
G
I
P
G
K
C
G
V
N
V
G
F
P
I
S
L
S
T
D
C
S
K
V
S
47
95.70
100%
-156
- C- -
M047
-
A:
[1-124]
A
I
T
C
G
Q
V
G
S
A
I
A
P
C
I
S
Y
V
T
G
R
G
G
L
T
Q
G
C
C
N
G
V
K
G
L
N
N
A
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
T
L
A
G
T
I
K
S
L
N
L
G
A
A
A
G
I
P
G
K
C
G
V
N
V
G
F
P
I
S
L
S
T
D
C
S
K
V
S
41
94.80
100%
-156
- C- -
M041
-
A:
[1-124]
A
I
T
C
G
Q
V
G
S
A
I
A
P
C
I
S
Y
V
T
G
R
G
G
L
T
Q
G
C
C
N
G
V
K
G
L
N
N
A
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
T
L
A
G
T
I
K
S
L
N
L
G
A
A
A
G
I
P
G
K
C
G
V
N
V
G
F
P
I
S
L
S
T
D
C
S
K
V
S
46
94.53
100%
-154
- C- -
M046
-
A:
[1-124]
A
I
T
C
G
Q
V
G
S
A
I
A
P
C
I
S
Y
V
T
G
R
G
G
L
T
Q
G
C
C
N
G
V
K
G
L
N
N
A
A
R
T
T
A
D
R
Q
A
A
C
R
C
L
K
T
L
A
G
T
I
K
S
L
N
L
G
A
A
A
G
I
P
G
K
C
G
V
N
V
G
F
P
I
S
L
S
T
D
C
S
K
V
S