@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-01 )
AVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------.........10--.........----20------------.-.----------------------.---------------.------------.--....30........40........50....-...-.60-.----.-------------.----.--------.-----.--...70.--.......80--........90...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------AVSCNTVIAD---LYPCLSYVT----Q-------------G-G----------------------P---------------V------------P--TLCCNGLTTLKSQAQTSVDRQGVCRCIKSA-IGG-LT--L----S-------------P----R--------T-----I--QNALEL--PSKCGVDLP--YKFSPSTDCDSIQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
94.17
45%
-123
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
N
---
L
A
P
C
L
A
Y
L
R
----
N
-------------
T
-
G
--------------------------------------
P
------------
L
--
G
R
C
C
G
G
V
K
A
L
V
N
S
A
R
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
S
---------------------
G
----
I
--------
N
-----
L
--
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--
Y
K
I
S
P
S
T
D
C
S
K
V
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
SP3
92.64
40%
-132
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
----------------------
S
G--------------
P
------------
S
--
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-----
V
----
S
-------------
G
----
L
--------
N
-----
A
--
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
91.07
39%
-129
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
L
---
V
R
P
C
L
S
Y
V
Q
----
G
-------------
G
-
P
----------------------
G
---------------
P
------------
S
--
G
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
--------
H
-------------
N
----
L
--------
N
-----
E
--
D
N
A
R
S
I
--
P
P
K
C
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V
N
L
P
--
Y
T
I
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L
N
I
D
C
S
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
88.96
41%
-123
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
----------------------
S
G--------------
P
------------
S
--
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
--------
S
-------------
G
----
L
--------
N
-----
A
--
G
N
A
A
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--
P
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K
C
G
V
S
I
P
--
Y
T
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T
S
T
D
C
S
R
V
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
88.51
41%
-125
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
----------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
F
L
Q
----
K
-------------
G
-
G
----------------------
V
---------------
V
------------
P
--
P
S
C
C
T
G
V
K
N
I
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N
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S
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T
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A
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A
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C
S
C
L
K
A
A
-
A
G
A
-
V
--------
R
-------------
G
----
I
--------
N
-----
P
--
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--
Y
K
I
S
T
S
T
N
C
N
S
I
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
87.97
41%
-128
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
---------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
S
---
L
A
P
C
I
P
Y
V
R
----
G
-------------
G
-
G
----------------------
A
---------------
V
------------
P
--
P
A
C
C
N
G
I
R
N
V
N
N
L
A
R
T
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R
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A
A
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N
C
L
K
Q
L
-
S
A
S
-
V
P
---------------------
G
----
V
--------
N
-----
P
--
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--
Y
K
I
S
A
S
T
N
C
A
T
V
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
69.34
29%
-156
- C2 -
1SM7
-
?
A:
[13-101]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA----------
G
-
S
----------------------
P
F
S
E
NQWGPQQGPS--
L
------------
R
--
E
Q
C
C
N
E
L
Y
Q
E
--------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
R
--
V
----
Q
-------------
G
QHGP
F
QST
R
----
I
-----
Y
--
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
64.40
22%
-122
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
NLGERSQVSPR
M
R
E
-
E
----------------------
D
---------------
H
------------
K
--
Q
L
C
C
M
Q
L
K
N
L
D
E
K
C
M
--------
C
P
A
I
M
M
M
-
L
N
E
-
P
M
--
W
----
I
-------------
R
MR
D
-
Q
--------
V
-----
M
--
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------
S
Q
P
C
Q
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
61.29
23%
-137
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-------------
I
-
G
----------------------
P
R--------------
L
P
W
P
E
L
-------
K
--
R
R
C
C
R
E
L
A
D
I
--------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
I
--
P
----
P
G
PDAQ--------
L
E
G
R
-
L
E
D
LPGCP
R
E
-----
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
58.27
29%
-92
- C2 -
1PSY
-
2SS_RICCO
A:
[25-120]
-----------------------------------------------------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
----------
R
R
S
T
GE-------------------
E
VLRMPGDENQQQESQ
Q
------------
L
--
Q
Q
C
C
N
Q
V
K
Q
V
--------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
I
--
Q
Q
G
QL
H
-------------
G
EE
S
E
R
--------
V
-----
A
--
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
--
C
M
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
58.26
23%
-112
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
----------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
-
N
PT--------------------
S
---------------
P
------------
S
--
Q
P
C
C
T
A
L
Q
H
A
--------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
-
F
----------------------
G
----
V
--------
D
-----
P
--
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
58.16
21%
-55
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
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Q
C
R
Q
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V
Q
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KD-
L
S
S
C
E
R
Y
L
R
----
Q
-------------
S
-
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
---------------
Q
------------
L
--
Q
Q
C
C
N
Q
V
K
Q
V
R
D
E
C
Q
C
E
A
I
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Y
I
A
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G
-
Q
L
H
-
G
E
--
E
----
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-------------
E
----
R
--------
V
-----
A
--
Q
R
A
G
E
I
--
V
S
S
C
G
V
R
-
C
--
M
R
Q
T
R
T
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
56.95
19%
-113
- C2 -
1W2Q
-
CONG_ARAHY
A:
[22-121]
----------------------------------------------------------------------------------------------------------------------------------------------
R
V
N
---
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M----------
G
-
E
QEQ-------------------
Y
---------------
D
SYDIRSTR
S
S
D
Q
Q
--
Q
R
C
C
D
E
L
N
E
M
E
-----
N
-
T
Q
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C
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C
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A
L
Q
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I
-
M
E
N
-
Q
C
--
D
RL--
Q
-------------
D
----
R
--------
Q
MV
Q
Q
F
K
--
R
E
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M
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L
--
P
Q
Q
C
N
F
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A
P
QR
C
D
L
D
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
54.69
17%
-160
- C2 -
1HSS
-
IAA1_WHEAT
A:
[15-103]
-----------------------------------------------------------------------------------------------------------------------------------------------
P
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
-
S
----------------------
Q
VP
E
A
-----------
V
------------
L
--
R
D
C
C
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Q
L
A
H
I
--------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
H
GAF-
P
-------------
R
CR
R
E
V
--------
V
-----
K
--
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
53.84
21%
-120
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-----------------------------------------------------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG---------
V
-
G
----------------------
P
RLA
T
Q
E
---------
M
------------
K
--
A
R
C
C
R
Q
L
E
A
I
--------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
-
V
V
--
T
----
P
SG
Q
H
E
G
RLLQDLP
G
CP--
R
Q
V
Q
R
----
A
-----
F
--
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--
H
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
HHSearch
51.05
22%
-106
- C2 -
2LVF
-
?
A:
[16-101]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
M
---
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
----------
E
-
S
----------------------
T
---------------
Y
QTMPRRGMEP
H
-
M
--
S
E
C
C
E
Q
L
E
G
M
--------
D
E
S
C
R
C
E
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L
R
M
M
-
M
R
M
M
Q
Q
--
K
----
E
M
Q
P
R
---------
G
E
Q
M
R
R
--------
M
-----
M
--
R
L
A
E
N
I
--
P
S
R
C
N
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
50.14
26%
-131
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-----------------------------------------------------------------------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
M
----
K
NLGE---------
R
-
S
----------------------
Q
VSPR
M
R
E
E
D
------
H
------------
K
--
Q
L
C
C
M
Q
L
K
N
L
--------
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E
K
C
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C
P
A
I
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M
M
-
L
N
E
-
P
M
-------
W
-------------
I
----
R
MR
D
Q
----
V
-----
M
--
S
M
A
H
N
L
--
P
I
E
C
N
L
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
48.59
22%
-70
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
E
---
L
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E
C
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A
V
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----
K
-------------
E
-
N
----------------------
P
---------------
T
------------
S
PS
Q
P
C
C
T
A
L
Q
H
A
----------
D
F
A
C
L
C
G
Y
K
N
-
S
P
W
-
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G
--
S
----
F
-------------
G
----
V
--------
D
-----
P
--
E
L
A
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A
L
--
P
K
Q
C
G
L
A
N
A
--------
P
T
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
47.12
17%
-48
- C2 -
2OBD
9
CETP_HUMAN
A:
[5-476]
T
S
H
E
A
G
I
V
C
R
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P
A
L
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L
N
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A
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LL
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LHNIQIS
H
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EAKSI
D
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DV
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YTTAWWL
G
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Q
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A
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SG
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T
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A
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C
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---
L
L
L
H
L
Q
---------------------
G
-
E
----------------------
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---------------
E
------------
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--
G
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-------------
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--------
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-----
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--
A
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G
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--
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E
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H
H
KG
H
F
I
Y
KDVSED
L
P
L
P
T
F
S
PTLLGDSRM
L
Y
F
W
F
S
E
R
V
F
H
S
L
A
K
V
A
F
Q
D
GRL
M
L
S
L
M
G
D
E
F
K
A
V
L
E
T
W
GFNTNQEIFQEVVGGFPSQ
A
Q
V
T
V
H
C
L
K
M
P
K
I
S
C
Q
NK
G
V
V
V
D
S
S
V
M
V
K
F
L
FPRPDQQHS
V
A
Y
T
F
E
E
D
I
V
T
T
V
Q
A
S
Y
S
KK
K
L
F
L
S
L
L
D
F
Q
I
T
P
K
T
V
S
N
LTESSS
E
S
I
Q
S
F
L
Q
S
M
I
T
AV
G
I
P
E
V
M
S
R
L
E
V
V
F
T
A
L
M
N
S
K
GVSLFDIIN
P
E
I
I
T
R
DG
F
L
L
L
Q
M
D
F
G
F
P
E
H
L
L
V
D
F
L
Q
S
LS
34
HHSearch
46.96
23%
-103
- C2 -
3OB4
-
?
A:
[427-485]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
------------
Q
--
E
R
C
C
N
E
L
N
E
F
E
N
------
N
Q
R
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
S
DR
L
----
Q
-------------
G
----
R
--------
Q
Q
E
Q
Q
F
K
--
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90...
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ
43
96.60
100%
-150
- C- -
M043
-
A:
[1-95]
A
V
S
C
N
T
V
I
A
D
L
Y
P
C
L
S
Y
V
T
Q
G
G
P
V
P
T
L
C
C
N
G
L
T
T
L
K
S
Q
A
Q
T
S
V
D
R
Q
G
V
C
R
C
I
K
S
A
I
G
G
L
T
L
S
P
R
T
I
Q
N
A
L
E
L
P
S
K
C
G
V
D
L
P
Y
K
F
S
P
S
T
D
C
D
S
I
Q
42
96.32
100%
-139
- C- -
M042
-
A:
[1-95]
A
V
S
C
N
T
V
I
A
D
L
Y
P
C
L
S
Y
V
T
Q
G
G
P
V
P
T
L
C
C
N
G
L
T
T
L
K
S
Q
A
Q
T
S
V
D
R
Q
G
V
C
R
C
I
K
S
A
I
G
G
L
T
L
S
P
R
T
I
Q
N
A
L
E
L
P
S
K
C
G
V
D
L
P
Y
K
F
S
P
S
T
D
C
D
S
I
Q
47
94.97
100%
-154
- C- -
M047
-
A:
[1-95]
A
V
S
C
N
T
V
I
A
D
L
Y
P
C
L
S
Y
V
T
Q
G
G
P
V
P
T
L
C
C
N
G
L
T
T
L
K
S
Q
A
Q
T
S
V
D
R
Q
G
V
C
R
C
I
K
S
A
I
G
G
L
T
L
S
P
R
T
I
Q
N
A
L
E
L
P
S
K
C
G
V
D
L
P
Y
K
F
S
P
S
T
D
C
D
S
I
Q
49
31.78
100%
19
- C- -
M049
-
A:
[2-94]
A
V
S
C
N
T
V
I
A
D
L
Y
P
C
L
S
Y
V
T
Q
G
G
P
V
P
T
L
C
C
N
G
L
T
T
L
K
S
Q
A
Q
T
S
V
D
R
Q
G
V
C
R
C
I
K
S
A
I
G
G
L
T
L
S
P
R
T
I
Q
N
A
L
E
L
P
S
K
C
G
V
D
L
P
Y
K
F
S
P
S
T
D
C
D
S
I
Q