@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-01 )
AISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10--.........----20------------.-.----------------------.--------------.-----.----.---...30........40----------.........50....-....60---.--.---------.----------.----------.....70--........80........90..---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AISCGAV--TG--S---LGQCYNYLT----R-------------G-G----------------------F--------------I-----P----R---GCCSGVQRLNSLAR-----------TTRDRQQACRCIQGA-ARALG----S--R---------L----------N----------AGRAARL--PGACRVRISYPISARTNCNTVR---------
11
HHSearch
92.52
48%
-131
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
P
C
I
P
Y
V
R
----
G
-------------
G
-
G
----------------------
A
--------------
V
-----
P
----
P
---
A
C
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
V
P
-------
G
---------
V
----------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
29
SP3
90.05
47%
-128
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
----------------------
S
G-------------
P
-----
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
S
-------
G
---------
L
----------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
12
HHSearch
89.31
49%
-124
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
R
----
N
-------------
T
-
G
-------------------------------------
P
-----
L
----
G
---
R
C
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
I
-----
S
--
G
---------
I
----------
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
15
HHSearch
86.13
44%
-128
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
Q
----
K
-------------
G
-
G
----------------------
V
--------------
V
-----
P
----
P
---
S
C
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
V
R
-------
G
---------
I
----------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
13
HHSearch
85.08
49%
-121
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
R
----
G
-------------
Q
-
G
----------------------
S
G-------------
P
-----
S
----
A
---
G
C
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
V
-----
S
--
G
---------
L
----------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
16
HHSearch
82.30
38%
-138
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
Q
----
G
-------------
G
-
P
----------------------
G
--------------
P
-----
S
----
G
---
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
I
-----
H
--
N
---------
L
----------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------
28
HHSearch
63.84
21%
-161
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
-
S
----------------------
Q
VP
E
A
----------
V
-----
L
----
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
K
E
H---------------GAFPRCR
R
E
V
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
D
A
S
------------------
26
HHSearch
59.03
20%
-134
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
R
----
Q
QLA----------
G
-
S
----------------------
P
F
S
E
NQWGPQQGPS-
L
-----
R
----
E
---
Q
C
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
V
R
VQ--
G
--
Q
---------
H
----------
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------
33
SP3
58.65
18%
-135
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQ
A
F
Q
------
V
P
--
A
---
L
P
A
C
R
P
L
L
R
----
L
Q
C
N
----------
G
-
S
----------------------
Q
--------------
V
-----
P
E
A
V
L
R
---
D
C
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
M
Y
----
K
--
E
---------
H
----------
G
AFPRCR
R
E
V
V
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
23
HHSearch
57.27
23%
-141
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC
G
-------------
I
-
G
----------------------
P
R-------------
L
P
W
P
E
L
K
----
R
---
R
C
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
A
I
P
P
G
-
P
--
D
AQL
E
G
R
---
L
----------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
---------------------
10
Fugue
53.73
23%
-75
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
G
S
S
S
Q
Q
C
R
Q
E
VQ
R
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
-------------
S
-
S
S
R
R
S
T
GEEVLRMPGDENQQQES
Q
--------------
Q
-----
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
I
----
Q
--
Q
---------
G
----------
Q
LHGEE
S
E
R
V
-
A
Q
R
A
G
E
I
--
V
S
S
C
G
--
V
R
C
M
R
Q
T
R
T
N
--------------
22
HHSearch
52.26
24%
-83
- C2 -
1PSY
-
2SS_RICCO
A:
[25-122]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
----------
R
R
S
T
GEE------------------
V
LRMPGDENQQQESQ
Q
-----
L
----
Q
---
Q
C
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
Q
I
----
Q
Q
G
Q
---------
L
HGEE
S
E
R
---
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
T
-----------------
3
Fugue
50.59
27%
-69
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
-
A
----------------------
R
--------------
P
-----
T
----
A
---
A
C
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R
Y
G
----
R
--
Y
---------
V
----------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
--
I
A
L
P
-----
T
C
H
------------
17
HHSearch
48.39
19%
-105
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
-
N
PT--------------------
S
--------------
P
-----
S
----
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
L
G
S
F
--------
G
---------
V
----------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
---------------------
21
HHSearch
46.36
15%
-131
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
---
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG---------
V
-
G
----------------------
P
RLA
T
Q
E
--------
M
-----
K
----
A
---
R
C
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
-
M
D
G
V
V
T
P--
S
--
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
-
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
---------------------
9
Fugue
44.32
15%
-88
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
M
----
K
NLGERSQVSPR
M
R
E
-
E
----------------------
D
--------------
H
-----
K
----
Q
---
L
C
C
M
Q
L
K
N
L
D
---------------------
E
K
C
M
C
-
P
A
I
-
M
M
M
L
N
----
E
--
P
---------
M
----------
W
----------
I
R
M
R
D
Q
V
--
M
S
M
A
H
N
L
P
I
E
C
N
L
M
S
Q
P
C
Q
M
-----------
2
Fugue
43.46
18%
-74
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
S
----
K
-------------
E
-
N
----------------------
P
--------------
T
-----
S
PS--
Q
---
P
C
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
-
W
L
G
S
F
----
G
------------
V
----------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
------
A
N
A
P
T
C
-------------
35
SP3
41.09
15%
-96
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
R
----
N
-------------
A
-
A
----------------------
P
--------------
D
-----
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
G
--
G
---------
L
----------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
30
SP3
39.33
19%
-59
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
G
C
--
N
--
A
G
--
Q
---
L
T
V
C
T
G
A
I
A
----
G
-------------
G
-
A
----------------------
R
--------------
P
-----
T
----
A
---
A
C
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
F
A
K
-
D
P
R
Y
G
----
R
--
Y
---------
V
----------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
-------
T
C
H
------------
32
SP3
37.43
15%
-78
* C3 *
1QPO
-
NADC_MYCTU
A:
[116-284]
-----------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
--------
G
--
S
---
V
V
D
A
L
R
A
V
R
----
N
-------------
A
-
A
----------------------
P
--------------
D
-----
L
----
P
C
E
V
E
V
D
S
-
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
V
M
L
E
S
S
G
--
G
---------
L
----------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
User Run . : Multi Template Modeling Result:
(5 SA)
.........10........20........30........40........50........60........70........80........90..
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR
39
96.26
100%
-137
- C- -
M039
-
A:
[1-94]
A
I
S
C
G
A
V
T
G
S
L
G
Q
C
Y
N
Y
L
T
R
G
G
F
I
P
R
G
C
C
S
G
V
Q
R
L
N
S
L
A
R
T
T
R
D
R
Q
Q
A
C
R
C
I
Q
G
A
A
R
A
L
G
S
R
L
N
A
G
R
A
A
R
L
P
G
A
C
R
V
R
I
S
Y
P
I
S
A
R
T
N
C
N
T
V
R
46
94.94
100%
-147
- C- -
M046
-
A:
[1-94]
A
I
S
C
G
A
V
T
G
S
L
G
Q
C
Y
N
Y
L
T
R
G
G
F
I
P
R
G
C
C
S
G
V
Q
R
L
N
S
L
A
R
T
T
R
D
R
Q
Q
A
C
R
C
I
Q
G
A
A
R
A
L
G
S
R
L
N
A
G
R
A
A
R
L
P
G
A
C
R
V
R
I
S
Y
P
I
S
A
R
T
N
C
N
T
V
R
40
93.36
100%
-140
- C- -
M040
-
A:
[1-94]
A
I
S
C
G
A
V
T
G
S
L
G
Q
C
Y
N
Y
L
T
R
G
G
F
I
P
R
G
C
C
S
G
V
Q
R
L
N
S
L
A
R
T
T
R
D
R
Q
Q
A
C
R
C
I
Q
G
A
A
R
A
L
G
S
R
L
N
A
G
R
A
A
R
L
P
G
A
C
R
V
R
I
S
Y
P
I
S
A
R
T
N
C
N
T
V
R
45
91.72
100%
-136
- C- -
M045
-
A:
[1-94]
A
I
S
C
G
A
V
T
G
S
L
G
Q
C
Y
N
Y
L
T
R
G
G
F
I
P
R
G
C
C
S
G
V
Q
R
L
N
S
L
A
R
T
T
R
D
R
Q
Q
A
C
R
C
I
Q
G
A
A
R
A
L
G
S
R
L
N
A
G
R
A
A
R
L
P
G
A
C
R
V
R
I
S
Y
P
I
S
A
R
T
N
C
N
T
V
R
43
86.53
100%
-138
- C- -
M043
-
A:
[1-94]
A
I
S
C
G
A
V
T
G
S
L
G
Q
C
Y
N
Y
L
T
R
G
G
F
I
P
R
G
C
C
S
G
V
Q
R
L
N
S
L
A
R
T
T
R
D
R
Q
Q
A
C
R
C
I
Q
G
A
A
R
A
L
G
S
R
L
N
A
G
R
A
A
R
L
P
G
A
C
R
V
R
I
S
Y
P
I
S
A
R
T
N
C
N
T
V
R