@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 089_tII_WHEAT: (2014-05-01 )
CEVTQLAVCASAILGGTKPSGECCGNLRAQQGCFCQYVKDPNYGHYVNSPHARETLQTCGIALPHC
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------.--.--....-...----10..--...--.--.-.-----20.......-----------.-----------30----.-.-.......40-----.-.------------....--------.-----..50.-...-----....60...---------..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------C--E--
V
T
Q
L
-
A
V
C
----
A
S
A
I
--LGG--T--K-P-----
S
G
E
C
C
GNLR-----------A-----------Q-----Q-
G
-
C
F
C
Q
YVKD------P-N------------YGHY--------V-----NS
P
H
A
-
R
E
T
-----
L
Q
T
CGIALP---------HC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
98.34
77%
-127
- C5 -
1N89
1
NLT2G_WHEAT
A:
[2-67]
-----------------------------------------------------------------------------------------
C
--
Q
--
A
S
Q
L
-
A
V
C
----
A
S
A
I
--
L
S
G
--
A
--
K
-
P
-----
S
G
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
Y
A
K
D
------
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
S
P
H
A
-
R
D
T
-----
L
T
S
C
G
L
A
V
P
---------
H
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
83.25
62%
-128
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------AG
C
--
N
--
A
G
Q
L
-
T
V
C
----
T
G
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
-----
V
S
S
C
G
I
A
L
P
---------
T
C
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
83.25
62%
-128
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------AG
C
--
N
--
A
G
Q
L
-
T
V
C
----
T
G
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
-----
V
S
S
C
G
I
A
L
P
---------
T
C
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
83.24
62%
-128
- C5 -
1L6H
-
NLTPX_ORYSJ
A:
[3-68]
-----------------------------------------------------------------------------------------
C
--
N
--
A
G
Q
L
-
T
V
C
----
T
G
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
-
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
P
N
A
-
R
K
A
-----
V
S
S
C
G
I
A
L
P
---------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
73.09
33%
-121
- C5 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------AIDL
C
GM
S
--
Q
D
E
L
-
N
E
C
----
K
P
A
V
--
S
K
E
NP
T
--
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-----
F
-
A
-
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
E
L
A
-
S
A
L
-----
P
K
Q
C
G
L
A
N
A
P--------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
69.04
30%
-110
- C5 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-----------------------------------------------------------------------------------------------
Q
D
E
L
-
N
E
C
----
K
P
A
V
--
S
K
E
--
N
PT
S
-
P
-----
S
Q
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
-
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
E
L
A
-
S
A
L
-----
P
K
Q
C
G
L
A
N
A
P--------
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
67.61
29%
-90
- C5 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
------------------------------------------------------------------------------------------------
S
A
I
-
A
P
C
----
I
S
Y
A
--
R
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
-
C
N
C
--
L
K
N
------
A
-
A
-------------
A
G
V
SG------
L
-----
N
A
G
N
A
-
A
S
I
-----
P
S
K
C
G
V
S
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
65.70
24%
-82
* C5 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------AIS
C
--
G
Q
V
A
S
A
I
-
A
P
C
----
I
S
Y
A
--
R
G
Q
--
G
--
S
G
P
-----
S
A
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
-
A
----
A
R
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
A
G
N
A
-
A
S
I
-----
P
S
K
C
G
V
S
I
P
YTISTST--
D
C
SRVN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
64.77
35%
-100
- C5 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
------------------------------------------------------------------------------------------------
S
N
L
-
A
P
C
----
L
A
Y
L
--
R
N
T
--
G
----
P
-----
L
G
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
-
C
T
C
--
L
K
S
------
A
-
A
-------------
G
A
I
SG------
I
-----
N
L
G
K
A
-
A
G
L
-----
P
S
T
C
G
V
N
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
61.48
31%
-86
- C5 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
------------------------------------------------------------------------------------------------
S
S
L
-
A
P
C
----
I
P
Y
V
--
R
G
G
--
G
--
A
-
V
-----
P
P
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
-
C
N
C
--
L
K
Q
------
L
-
S
-------------
A
S
V
PG------
V
-----
N
P
N
N
A
-
A
A
L
-----
P
G
K
C
G
V
S
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
61.28
29%
-75
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
---------------------------------------------------------------------------------------ID
C
--
G
H
V
D
S
L
V
-
R
P
C
----
L
S
Y
V
--
Q
G
G
P----
G
-
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
-
C
N
C
L
K
G
I
A
------
R
-
G
------------
I
H
N
L
--------
N
------
E
D
N
A
-
R
S
I
-----
P
P
K
C
G
--
V
N
LP
Y
T
I
S
LNI
D
C
SRV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
61.01
16%
-109
- C5 -
1KNG
-
CYCY_BRADU
A:
[50-193]
--------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEGLQ
A
--
D
--
N
V
Q
V
-
P
G
L
----
D
P
A
A
--
F
K
G
-----
K
-
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
-----------
D
-----------
E
-----
A
-
P
-
L
L
T
E
L
G
K
D
------
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
A
D
N
A
-
R
R
F
-----
L
G
R
Y
G
N
P
F
G
---------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
58.47
25%
-110
- C5 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
-------------------------------------------------------------------------------------------------
D
L
-
S
I
C
----
L
N
I
L
GG
S
L
G
--
T
----------
V
D
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
-
C
L
C
I
Q
L
R
A
---------------------
L
G
I
---------
L
-----
N
L
N
R
N
L
Q
L
I
-----
L
N
S
C
G
R
S
Y
P
---------
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
54.67
31%
-47
- C5 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-----------------------------------------------------------------------------------------------
D
S
L
V
-
R
P
C
----
L
S
Y
V
--
Q
G
G
--
P
--
G
-
P
-----
S
G
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
-
C
N
C
L
K
G
I
A
------
R
-
G
------------
I
H
-
N
--------
L
-----
N
E
D
N
A
-
R
S
I
-----
P
P
K
C
G
V
N
L
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
51.61
21%
-71
- C5 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-----------------------------------------------------------------------------------------------
Q
G
N
L
-
A
Q
C
----
I
G
F
L
--
Q
K
G
--
G
--
V
-
V
-----
P
P
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
-
C
S
C
L
K
A
A
A
------
G
-
A
------------
V
R
-
G
--------
I
-----
N
P
N
N
A
-
E
A
L
-----
P
G
K
C
G
V
N
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
50.80
13%
-89
- C5 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
--
K
--
N
L
G
E
-
R
S
Q
----
V
S
P
R
--
M
R
E
--
E
--
D
-
H
-----
K
Q
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
-
C
M
C
P
A
I
M
M
M
L
N
EPM
W
-
I
------------
R
M
R
D
--------
Q
-----
V
M
S
M
A
-
H
N
L
-----
P
I
E
C
N
L
M
S
Q
---------
P
C
QM-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
50.20
13%
-96
- C5 -
1ELK
-
TOM1_HUMAN
A:
[1-153]
SDFLLGNPFSS
P
V
G
Q
R
I
E
K
A
T
DGSLQSED
W
A
L
N
M
E
I
C
D
I
I
N
E
TEE
G
P
K
D
A
L
R
A
V
K
K
R
I
VGNKN
F
H
E
V
M
L
A
L
T
V
L
E
T
C
V
K
N
CG
H
R
F
H
V
L
V
A
--
S
--
Q
D
F
V
E
S
V
L
----
V
R
T
I
--
L
P
K
--
N
--
N
-
P
-----
P
T
I
V
H
D
K
V
L
-----------
N
-----------
L
-----
I
-
Q
-
S
W
A
D
A
F
R
S
S-----
P
-
D
------------
L
T
G
V
----------------
V
T
I
-
Y
E
D
-----
L
R
R
K
G
L
E
F
P
---------
M
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
48.66
15%
-98
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-----------------------------------------------------------------------------------------
P
--
R
--
G
S
A
L
-
S
D
T
E
R
A
Q
L
D
V
M
--
K
L
L
--
N
--
V
-
S
-----
L
H
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
-
C
I
R
V
Y
L
K
D
------
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
V
R
D
E
-
R
N
V
-----
I
R
A
A
S
N
S
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
48.06
24%
-64
- C5 -
1QSD
-
TBCA_YEAST
A:
[4-105]
------------------------------------------------------------------------------------------------
T
Q
L
-
D
I
K
----
V
K
A
L
--
K
R
L
--
T
--
K
-
E
-----
E
G
Y
Y
Q
Q
E
L
K
-----------
D
-----------
Q
-----
E
-
A
-
H
V
A
K
L
K
E
D
------
K
-
S
------------
V
D
P
Y
--------------
D
L
K
K
Q
-
E
E
V
-----
L
D
D
T
K
R
L
L
P
---------
T
L
Y
E
K
I
R
E
F
K
E
D
L
E
Q
F
L
K
T
YQGTEDV
S
D
A
R
S
A
I
T
S
A
Q
E
L
L
D
S-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
44.82
26%
-96
- C1 -
4DTH
2
?
A:
[12-367]
------------------------------------------------------------------------ATPDFPTHFP
K
S
S
I
G
I
E
N
--
E
--
L
A
G
L
-
V
V
A
----
M
P
------------
A
-
N
-----
S
A
Q
K
F
G
Y
V
K
-----------
S
-----------
A
-----
Q
-
G
D
A
L
F
M
L
T
K
D
------
M
-
N
------------
Q
G
S
Y
--------
Q
-----
R
P
P
S
L
-
Q
D
G
KNYQN
W
Q
T
H
T
V
E
L
V
---------
S
Y
PCEMDD
K
A
A
V
E
T
R
K
Q
A
M
L
W
L
A
T
H
F
T
T
H
I
D
QSNHQPLAPIQSEDGR
F
V
I
E
I
TNAK
H
V
I
A
A
GNGISAESQGQT
I
T
M
T
PSG
Q
Q
A
T
V
G
V
AAKGFGTSAT
P
E
L
R
L
L
E
S
APWYQ
K
S
L
K
S
Q
F
A
S
L
T
S
AENLDD
K
E
L
A
A
N
V
F
A
Y
L
T
S
I
Y
L
K
T
A
E
L
A
K
K
F
GIYINEWDPMSEQITPNANGLTD
P
K
V
K
N
A
W
E
ILPRTK
P
S
K
I
V
E
I
L
S
K
S
D
A
K
A
V
M
K
H
I
K
P
Q
L
Q
S
R
YS
E
S
L
S
K
N
V
F
Q
Y
F
Q
D
GGEVAGHGINN
A
T
V
G
DKHSP
E
L
A
I
L
F
E
FRTVPNELQSY
L
P
K
T
E
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60.....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
CE
V
T
Q
L
A
V
C
A
S
A
I
LGGTKP
S
G
E
C
C
GNLRAQQ
G
C
F
C
Q
YVKDPNYGHYVNS
P
H
A
R
E
T
L
Q
T
CGIALPHC
40
96.67
100%
-133
- C- -
M040
-
A:
[1-176]
C
E
V
T
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
N
S
P
H
A
R
E
T
L
Q
T
C
G
I
A
L
P
H
C
41
96.57
100%
-138
- C- -
M041
-
A:
[1-176]
C
E
V
T
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
N
S
P
H
A
R
E
T
L
Q
T
C
G
I
A
L
P
H
C
42
96.02
100%
-131
- C- -
M042
-
A:
[1-102]
C
E
V
T
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
N
S
P
H
A
R
E
T
L
Q
T
C
G
I
A
L
P
H
C
43
95.12
100%
-134
- C- -
M043
-
A:
[1-102]
C
E
V
T
Q
L
A
V
C
A
S
A
I
L
G
G
T
K
P
S
G
E
C
C
G
N
L
R
A
Q
Q
G
C
F
C
Q
Y
V
K
D
P
N
Y
G
H
Y
V
N
S
P
H
A
R
E
T
L
Q
T
C
G
I
A
L
P
H
C