@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 105_tII_WHEAT: (2014-05-01 )
ATCDALQLSPCAGAIVGNAAPTAVCCSRMKAQRPCMCQYARDPNLKQYVNSPNGKKVLAACKVPVPSC
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------...-----.--..--...10-.....--.--..--.--20.-----.-----------......---.------30.-----------.-----.-.....------------------.40----.-.-.------------..-----..--------.50--...---.....60...-..-------..--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC-----D--
A
L
--QLSP--CAGAI--V--GN--A--
A
-
P
-----
T
-----------
A
V
C
C
S
R
---M------K-A-----------Q-----R-P
C
M
C
Q------------------YAR----D-P-
N
------------
L
K
-----
Q
Y
--------VNS--PNG---
K
K
V
L
A
A
CKVP-VP-------SC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
89.29
51%
-108
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
--
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
---
L
------
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
------------------
F
A
K
----
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
89.29
51%
-108
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
--
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
---
L
------
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
------------------
F
A
K
----
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
89.29
51%
-107
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
T
V
--
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
A
C
C
S
S
---
L
------
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
------------------
F
A
K
----
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
86.72
45%
-102
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
A
V
--
C
A
S
A
I
--
L
--
S
G
--
A
--
K
-
P
-----
S
-----------
G
E
C
C
G
N
---
L
------
R
-
A
-----------
Q
-----
Q
-
G
C
F
C
Q
------------------
Y
A
K
----
D
-
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
--
P
H
A
---
R
D
T
L
T
S
C
G
L
A
-
V
P
-------
H
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
68.58
26%
-83
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
-----
G
Q
V
A
S
--
A
I
A
P
--
C
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
---
V
------
R
-
S
-----------
L
-----
N
-
N
A
----------------------
A
R
----
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
--
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST
D
C
SRVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
67.36
23%
-99
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
GM---
S
--
Q
D
--
E
L
N
E
--
C
K
P
A
V
--
S
--
K
E
NP
T
--
S
-
P
-----
S
-----------
Q
P
C
C
T
A
---
L
------
Q
H
A
-----------
D
-----
F
-
A
C
L
C
G
------------------
Y
K
N
----
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
64.40
22%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
--
E
L
N
E
--
C
K
P
A
V
--
S
--
K
E
--
N
PT
S
-
P
-----
S
-----------
Q
P
C
C
T
A
---
L
------
Q
-
H
-----------
A
-----
D
F
A
C
L
C
G
------------------
Y
K
N
----
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
63.54
20%
-76
- C2 -
1MOL
-
MONB_DIOCU
A:
[1-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
W
-----
E
--
I
I
--
D
I
G
P
--
F
T
Q
N
L
--
G
--
K
F
--
A
--
V
-
D
-----
E
-----------
E
N
K
I
G
Q
---
Y
G
R
L
T
F
N
K
-
V
-----------
I
-----
R
-
P
C
M
K
K
T
I
Y
E
N
EREIK
G
Y
E
Y
Q
L
Y
V
Y
A
S
----
D
-
K
-
L
------------
F
R
-----
A
D
--------
I
S
E
D
Y
K
T
R
---
G
R
K
L
L
R
F
N
G
P
-
V
P
-------
P
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
62.77
26%
-86
- C2 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
C
-----
G
--
Q
V
A
S
A
I
A
P
--
C
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
-----
S
-----------
A
G
C
C
S
G
---
V
------
R
-
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--------------------
L
K
----
N
-
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
--
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
62.36
26%
-65
- C2 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
N
L
A
P
--
C
L
A
Y
L
--
R
--
N
T
--
G
----
P
-----
L
-----------
G
R
C
C
G
G
---
V
------
K
-
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--------------------
L
K
----
S
-
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
--
G
K
A
---
A
G
L
P
S
T
C
G
V
N
-
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
61.85
29%
-90
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
C
-----
G
--
Q
V
S
S
S
L
A
P
--
C
I
P
Y
V
--
R
--
G
G
--
G
--
A
-
V
-----
P
-----------
P
A
C
C
N
G
---
I
------
R
-
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--------------------
L
K
----
Q
-
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
--
N
N
A
---
A
A
L
P
G
K
C
G
V
S
-
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
61.42
19%
-126
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
N
H
--
C
G
M
Y
L
--
M
KN
L
G
--
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
L
C
C
M
Q
---
L
------
K
-
N
L----------
D
-----
E
-
K
C
M
C
P
------------------
A
I
M
M
M
L
N
E
-
P
-
M
------------
W
I
-----
R
M
--------
R
D
Q
V
M
S
M
A
---
H
N
L
P
I
E
C
N
L
M
-
S
Q
-------
P
C
QM------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
58.82
25%
-106
- C2 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
S
I
--
C
L
N
I
L
GG
S
--
L
G
--
T
----------
V
-----------
D
D
C
C
A
L
---
I
------
G
-
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
------------------
Q
L
R
----
A
----------------
L
G
-----
I
---------
L
N
L
--
N
R
N
L
--
Q
L
I
L
N
S
C
G
R
S
-
Y
P
-------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
57.94
25%
-64
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
--
L
V
R
P
--
C
L
S
Y
V
--
Q
--
G
G
--
P
--
G
-
P
-----
S
-----------
G
Q
C
C
D
G
---
V
------
K
-
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
------------------
K
G
I
----
A
-
R
-
G
------------
I
H
------
N
--------
L
N
E
--
D
N
A
---
R
S
I
P
P
K
C
G
V
N
-
L
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
55.13
23%
-73
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
--
N
L
A
Q
--
C
I
G
F
L
--
Q
--
K
G
--
G
--
V
-
V
-----
P
-----------
P
S
C
C
T
G
---
V
------
K
-
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
------------------
K
A
A
----
A
-
G
-
A
------------
V
R
------
G
--------
I
N
P
--
N
N
A
---
E
A
L
P
G
K
C
G
V
N
-
I
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
52.71
30%
-54
- C2 -
2ZB6
2
HEMA_MEASE
A:
[12-462]
VA
A
E
E
L
M
NALSK
G
N
C
S
G
P
T
T
I
R
G
Q
F
S
NMSLS
L
L
D
L
Y
L
G
R
GYNVSS
I
V
T
M
T
S
QG
M
Y
G
G
T
Y
L
V
E
K
P
N
LSQ
L
S
M
Y
R
V
F
E
V
G
V
IRNPGLG
A
P
V
F
H
M
T
N
Y
L
E
Q
P
V
SNDL
S
N
C
M
V
A
L
G
EL
K
L
A
A
L
C
H
GED
S
I
T
I
P
Y
QGS
G
K
G
V
S
F
Q
L
V
K
L
G
VWKSPT
D
M
Q
S
W
V
P
L
S
TDD
P
V
I
-----
D
--
R
L
--
Y
L
S
S
--
H
R
G
V
I
--
A
--
D
N
--
Q
--
A
-
K
-----
W
-----------
A
V
P
T
T
R
TDD
K
------
L
-
R
-----------
M
-----
E
-
T
C
F
Q
Q
------------------
A
C
K
----
G
---------------------------------------------
K
I
Q
A
L
C
E
N
P
-
E
W
-------
A
P
L
K
D
N
R
I
P
S
Y
G
V
L
S
V
DLSLTVEL
K
I
K
I
A
S
G
F
G
PLITHGS
G
M
D
L
Y
K
S
NHNN
V
Y
W
L
T
I
P
PMKNLA
L
G
V
I
N
T
L
E
WIP
R
F
K
V
S
P
Y
L
F
T
V
P
I
K
EAGGD
C
H
A
P
T
Y
L
P
A
EVDG
D
V
K
L
S
S
N
L
V
I
L
P
GQ
D
L
Q
Y
V
L
A
T
Y
D
TSRVE
H
A
V
V
Y
Y
V
Y
S
PS
R
S
F
S
Y
F
YPF
R
L
P
I
K
G
V
P
I
E
L
Q
V
E
C
F
T
W
DQ
K
L
W
C
R
H
F
C
V
L
A
D
SES
G
G
H
I
T
H
S
G
M
V
G
M
G
V
S
C
T
23
Fugue
52.45
9%
-108
- C2 -
3ZR8
1
?
X:
[1-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
T
-----
E
--
K
A
--
A
V
K
K
--
M
A
K
A
I
--
M
--
A
D
--
P
--
S
-
K
-----
A
-----------
D
D
V
Y
Q
K
---
W
------
A
-
D
-----------
K
-----
G
-------------------------
Y
T
----
L
-
T
-
Q
------------
L
S
-----
D
F
--------
L
K
S
--
K
T
R
GKY
D
R
V
Y
N
G
Y
M
T
Y
-
R
D
-------
Y
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
50.94
14%
-81
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
------------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
-----
D
--
N
V
--
Q
V
P
G
--
L
D
P
A
A
--
F
--
K
G
-----
K
-
V
S
L
V
N
V
W
-----------
A
S
W
C
V
P
---
C
------
H
-
D
-----------
E
-----
A
-
P
L
L
T
E
------------------
L
G
K
----
D
-
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
--
D
N
A
---
R
R
F
L
G
R
Y
G
N
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L--------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
49.22
10%
-85
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------PRG
S
A
L
-----
S
--
D
T
--
E
R
A
Q
---
L
D
V
M
--
K
--
L
L
--
N
--
V
-
S
-----
L
-----------
H
E
M
S
R
K
---
I
------
S
-
R
-----------
S
-----
R
-
H
C
I
R
V
------------------
Y
L
K
----
D
-
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
--
R
D
E
---
R
N
V
I
R
A
A
S
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
47.59
13%
-79
- C2 -
1F9M
-
TRXF_SPIOL
A:
[10-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------MEA
I
V
G
-----
K
--
V
T
--
E
V
N
K
DT
F
W
P
I
V
--
K
A
-
A
G
--
D
--
K
-
P
V
V
L
D
M
F
-----------
T
Q
W
C
G
P
---
C
------
K
-
A
-----------
M
-----
A
-
P
K
Y
E
K
------------------
L
A
E
----
E
Y
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
C
N
--
Q
E
N
---
K
T
L
A
K
E
L
G
I
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ATCD
A
L
QLSPCAGAIVGNA
A
P
T
A
V
C
C
S
R
MKAQRP
C
M
C
QYARDP
N
L
K
Q
Y
VNSPNG
K
K
V
L
A
A
CKVPVPSC
40
98.01
100%
-121
- C- -
M040
-
A:
[1-99]
A
T
C
D
A
L
Q
L
S
P
C
A
G
A
I
V
G
N
A
A
P
T
A
V
C
C
S
R
M
K
A
Q
R
P
C
M
C
Q
Y
A
R
D
P
N
L
K
Q
Y
V
N
S
P
N
G
K
K
V
L
A
A
C
K
V
P
V
P
S
C