@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 108_tII_WHEAT: (2014-05-01 )
QCNAGSLAVCASPIISGAKPSTTCCNNLKSQRGCFCQYARNPAYSSYINSPNARKTLTSCGVAVPKC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------...--....---..10------------.----..--...--.--.-20----..-------.....--..30----------.-----.-.......40-.-.------------....--------.-----.50-...-......60....-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------QCN--AG
S
L
---
A
V
C
A
------------
S
----
P
I
--ISG--A--K-P-----
S
T
-------
T
C
C
N
N
--
L
K
S-----------Q-----R-
G
C
F
C
QYARN-P-A------------
Y
S
SY--------I-----NS--PNA-
R
K
T
L
T
SCGVAVP-------KC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
96.45
67%
-108
- C6 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
----------------------------------------------------------------------------------------
A
C
Q
--
A
S
Q
L
---
A
V
C
A
------------
S
----
A
I
--
L
S
G
--
A
--
K
-
P
-----
S
G
-------
E
C
C
G
N
--
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
-
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
S
--
P
H
A
-
R
D
T
L
T
S
C
G
L
A
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
81.70
55%
-116
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[2-68]
----------------------------------------------------------------------------------------
G
C
N
--
A
G
Q
L
---
T
V
C
T
------------
G
----
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
-------
A
C
C
S
S
--
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
81.35
55%
-116
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------A
G
C
N
--
A
G
Q
L
---
T
V
C
T
------------
G
----
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
-------
A
C
C
S
S
--
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
81.35
55%
-116
- C6 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
---------------------------------------------------------------------------------------A
G
C
N
--
A
G
Q
L
---
T
V
C
T
------------
G
----
A
I
--
A
G
G
--
A
--
R
-
P
-----
T
A
-------
A
C
C
S
S
--
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
--
P
N
A
-
R
K
A
V
S
S
C
G
I
A
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
65.02
33%
-80
- C6 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------------------------
Q
G
N
L
---
A
Q
C
I
------------
G
----
F
L
--
Q
K
G
--
G
--
V
-
V
-----
P
P
-------
S
C
C
T
G
--
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
-
G
-
A
------------
V
R
-
G
--------
I
-----
N
P
--
N
N
A
-
E
A
L
P
G
K
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
63.98
26%
-87
- C6 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-------------------------------------------------------------------------------------AID
L
C
G
MS
Q
D
E
L
---
N
E
C
K
------------
P
----
A
V
--
S
K
E
NP
T
--
S
-
P
-----
S
Q
-------
P
C
C
T
A
--
L
Q
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
62.83
33%
-84
- C6 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
----------------------------------------------------------------------------------------------
S
A
I
---
A
P
C
I
------------
S
----
Y
A
--
R
G
Q
--
G
--
S
G
P
-----
S
A
-------
G
C
C
S
G
--
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
-
A
-
A
-------------
A
G
V
SG------
L
-----
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
62.13
27%
-97
- C6 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
---------------------------------------------------------------------------------------------
Q
D
E
L
---
N
E
C
K
------------
P
----
A
V
--
S
K
E
--
N
PT
S
-
P
-----
S
Q
-------
P
C
C
T
A
--
L
Q
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
--
E
L
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
61.98
31%
-68
* C6 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
--------------------------------------------------------------------------------------AI
S
C
G
Q
V
A
S
A
I
---
A
P
C
I
------------
S
----
Y
A
--
R
G
Q
--
G
--
S
G
P
-----
S
A
-------
G
C
C
S
G
--
V
R
S
-----------
L
-----
N
-
N
A
----
A
R
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
A
--
G
N
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
60.47
32%
-92
- C6 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
----------------------------------------------------------------------------------------------
S
N
L
---
A
P
C
L
------------
A
----
Y
L
--
R
N
T
--
G
----
P
-----
L
G
-------
R
C
C
G
G
--
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
-
A
-
A
-------------
G
A
I
SG------
I
-----
N
L
--
G
K
A
-
A
G
L
P
S
T
C
G
V
N
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
56.25
25%
-97
- C6 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
-----------------------------------------------------------------------------------------------
D
L
---
S
I
C
L
------------
N
----
I
L
GG
S
L
G
--
T
----------
V
D
-------
D
C
C
A
L
--
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
----------------
L
G
I
---------
L
-----
N
L
--
N
R
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
54.86
33%
-76
- C6 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
----------------------------------------------------------------------------------------------
S
S
L
---
A
P
C
I
------------
P
----
Y
V
--
R
G
G
--
G
--
A
-
V
-----
P
P
-------
A
C
C
N
G
--
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
-
L
-
S
-------------
A
S
V
PG------
V
-----
N
P
--
N
N
A
-
A
A
L
P
G
K
C
G
V
S
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
51.17
13%
-92
- C6 -
1KNG
-
CYCY_BRADU
A:
[50-193]
--------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEGL
Q
A
D
--
N
V
Q
V
---
P
G
L
D
------------
P
----
A
A
--
F
K
G
-----
K
-
V
S
L
V
N
V
W
A
-------
S
W
C
V
P
--
C
H
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
-
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
A
--
D
N
A
-
R
R
F
L
G
R
Y
G
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
49.04
31%
-49
- C6 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------------------------
D
S
L
V
---
R
P
C
L
------------
S
----
Y
V
--
Q
G
G
--
P
--
G
-
P
-----
S
G
-------
Q
C
C
D
G
--
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
-
R
-
G
------------
I
H
-
N
--------
L
-----
N
E
--
D
N
A
-
R
S
I
P
P
K
C
G
V
N
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
45.82
19%
-55
- C1 -
2KSS
-
CARS_MYXXA
A:
[21-106]
----------------------------------------------------------------------------------------
M
I
Q
--
D
P
S
L
---
I
I
C
H
------------
D
VDGA
P
V
--
R
I
G
--
A
--
K
-
V
-----
K
V
VPHSEDG
T
I
S
Q
R
--
F
L
G
-----------
Q
-----
T
-
G
I
V
V
G
L
V
F
D
-
D
-
P
------------
A
T
Q
Y
--------
P
-----
D
D
--
P
L
I
-
Q
V
L
V
E
G
L
G
E
D
L
F
-------
F
P
EELELAPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
43.28
10%
-73
- C6 -
1U78
-
TC3A_CAEEL
A:
[2-104]
------------------------------------------------------------------------------------PRGS
A
L
S
--
D
T
E
R
---
A
Q
-
L
------------
D
----
V
M
--
K
L
L
--
N
--
V
-
S
-----
L
H
-------
E
M
S
R
K
--
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
-
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
V
--
R
D
E
-
R
N
V
I
R
A
A
S
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
41.87
20%
-87
- C3 -
1MOL
-
MONB_DIOCU
A:
[1-94]
-----------------------------------------------------------------------------G
E
W
E
I
I
D
IG
P
F
T
Q
N
--
L
G
K
F
---
A
V
D
E
E
N
K
I
GQY
G
R
L
T
F
N
----
K
V
--
I
R
P
--
C
--
M
-
K
-----
K
T
-------
I
Y
E
N
E
RE
I
K
G
-----------
Y
-----
E
-
Y
Q
L
Y
V
Y
A
S
D
-
K
-
L
------------
F
R
A
D
--------
I
-----
S
E
D
Y
K
T
R
-
G
R
K
L
L
R
F
N
G
P
V
P
-------
P
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
40.84
11%
-87
- C6 -
1TC3
-
TC3A_CAEEL
C:
[1-51]
------------------------------------------------------------------------------------PRGS
A
L
S
--
D
T
E
R
---
A
Q
-
L
------------
D
----
V
M
--
K
L
L
--
N
--
V
-
S
-----
L
H
-------
E
M
S
R
K
--
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
-
P
-
V
--------------
S
Y
--------
G
-----
T
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
40.32
13%
-69
- C6 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
-----------------------V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
T
--
A
G
T
L
T
L
L
P
V
A
L
------------
R
----
A
P
--
V
T
A
--
G
--
Q
-
L
-----
A
V
-------
E
N
G
H
Y
--
V
V
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
-
G
-
E
------------
F
A
A
L
--------
I
-----
T
G
--
P
V
H
-
K
G
V
I
N
D
A
G
I
P
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
33
SP3
39.41
13%
-63
- C6 -
1ELK
-
TOM1_HUMAN
A:
[1-153]
SDFLLGNPFSS
P
V
G
Q
R
I
E
K
A
T
DGSLQSED
W
A
L
N
M
E
I
C
D
I
I
N
E
TEE
G
P
K
D
A
L
R
A
V
K
K
R
I
VGNKN
F
H
E
V
M
L
A
L
T
V
L
E
T
C
V
K
N
CG
H
R
F
H
V
L
V
A
S
--
Q
D
F
V
E
--
S
V
L
V
------------
R
----
T
I
--
L
P
K
--
N
--
N
-
P
-----
P
T
-------
I
V
H
D
K
--
V
L
N
-----------
L
-----
I
-
Q
S
W
A
D
A
F
R
S
S
P
-
D
------------
L
T
G
V
------------------
V
T
I
-
Y
E
D
L
R
R
K
G
L
E
F
P
-------
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QCNAG
S
L
A
V
C
A
S
P
I
ISGAKP
S
T
T
C
C
N
N
L
K
SQR
G
C
F
C
QYARNPA
Y
S
SYINSPNA
R
K
T
L
T
SCGVAVPKC
44
92.95
100%
-121
- C- -
M044
-
A:
[1-84]
Q
C
N
A
G
S
L
A
V
C
A
S
P
I
I
S
G
A
K
P
S
T
T
C
C
N
N
L
K
S
Q
R
G
C
F
C
Q
Y
A
R
N
P
A
Y
S
S
Y
I
N
S
P
N
A
R
K
T
L
T
S
C
G
V
A
V
P
K
C
42
90.28
100%
-109
- C- -
M042
-
A:
[1-172]
Q
C
N
A
G
S
L
A
V
C
A
S
P
I
I
S
G
A
K
P
S
T
T
C
C
N
N
L
K
S
Q
R
G
C
F
C
Q
Y
A
R
N
P
A
Y
S
S
Y
I
N
S
P
N
A
R
K
T
L
T
S
C
G
V
A
V
P
K
C
41
86.91
100%
-108
- C- -
M041
-
A:
[1-172]
Q
C
N
A
G
S
L
A
V
C
A
S
P
I
I
S
G
A
K
P
S
T
T
C
C
N
N
L
K
S
Q
R
G
C
F
C
Q
Y
A
R
N
P
A
Y
S
S
Y
I
N
S
P
N
A
R
K
T
L
T
S
C
G
V
A
V
P
K
C