@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 109_tII_WHEAT: (2014-05-01 )
QCNAGSLAVCTSPIISGTPPSKTCCNNLKSQRGCFCKFARNPAYSSYINSRNAGKTLTSCGIAVPKC
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...--......10.-------.----.--...--.--.-20----.--..--......30----------.-----.-.------......40.-.------------....--------.-----.50-----...-......60---------....-------..--------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QCN--AG
S
L
A
V
CTS-------P----I--ISG--T--P-P-----
S
--
K
T
--
C
C
N
N
L
K
S-----------Q-----R-
G
------
C
F
C
K
FARNP-
A
------------
Y
S
S
Y--------I-----NS------RNA-GK
T
L
T
SCG---------IAVP-------KC--------------------------------------------------------------------------
1
HHSearch
95.53
57%
-107
- C1 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
C
Q
--
A
S
Q
L
A
V
C
A
S
-------
A
----
I
--
L
S
G
--
A
--
K
-
P
-----
S
--
G
E
--
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
Y
A
K
D
P
-
T
------------
Y
G
Q
Y
--------
I
-----
R
S
------
P
H
A
-
R
D
T
L
T
S
C
G
---------
L
A
V
P
-------
H
C
--------------------------------------------------------------------------
2
HHSearch
88.60
54%
-114
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[2-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
N
--
A
G
Q
L
T
V
C
T
G
-------
A
----
I
--
A
G
G
--
A
--
R
-
P
-----
T
--
A
A
--
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
A
L
P
-------
T
C
--------------------------------------------------------------------------
26
SP3
87.93
53%
-114
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
N
--
A
G
Q
L
T
V
C
T
G
-------
A
----
I
--
A
G
G
--
A
--
R
-
P
-----
T
--
A
A
--
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
A
L
P
-------
T
C
H-------------------------------------------------------------------------
16
Fugue
87.93
53%
-114
- C1 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
G
C
N
--
A
G
Q
L
T
V
C
T
G
-------
A
----
I
--
A
G
G
--
A
--
R
-
P
-----
T
--
A
A
--
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
------
C
F
C
Q
F
A
K
D
P
-
R
------------
Y
G
R
Y
--------
V
-----
N
S
------
P
N
A
-
R
K
A
V
S
S
C
G
---------
I
A
L
P
-------
T
C
H-------------------------------------------------------------------------
17
Fugue
76.94
26%
-90
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AID
L
C
G
MS
Q
D
E
L
N
E
C
K
P
-------
A
----
V
--
S
K
E
NP
T
--
S
-
P
-----
S
--
Q
P
--
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
------
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
---------
L
A
N
A
P------
T
C
--------------------------------------------------------------------------
3
HHSearch
73.74
25%
-98
- C1 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
D
E
L
N
E
C
K
P
-------
A
----
V
--
S
K
E
--
N
PT
S
-
P
-----
S
--
Q
P
--
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
------
C
L
C
G
Y
K
N
S
P
-
W
------------
L
G
S
F
G-------
V
-----
D
P
------
E
L
A
-
S
A
L
P
K
Q
C
G
---------
L
A
N
A
P------
T
C
--------------------------------------------------------------------------
5
HHSearch
71.72
31%
-75
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
G
N
L
A
Q
C
I
G
-------
F
----
L
--
Q
K
G
--
G
--
V
-
V
-----
P
--
P
S
--
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
------
C
S
C
L
K
A
A
A
G
-
A
------------
V
R
-
G
--------
I
-----
N
P
------
N
N
A
-
E
A
L
P
G
K
C
G
---------
V
N
I
P
-----------------------------------------------------------------------------------
27
SP3
65.75
29%
-69
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
S
C
G
Q
V
A
S
A
I
A
P
C
I
S
-------
Y
----
A
--
R
G
Q
--
G
--
S
G
P
-----
S
--
A
G
--
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
------
A
----
A
R
T
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
G
V
SG------
L
-----
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
---------
V
S
I
P
YTISTST
D
C
SRVN----------------------------------------------------------------------
9
HHSearch
64.68
30%
-83
- C1 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
N
L
A
P
C
L
A
-------
Y
----
L
--
R
N
T
--
G
----
P
-----
L
--
G
R
--
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
------
C
T
C
--
L
K
S
A
-
A
-------------
G
A
I
SG------
I
-----
N
L
------
G
K
A
-
A
G
L
P
S
T
C
G
---------
V
N
I
P
-----------------------------------------------------------------------------------
8
HHSearch
64.29
31%
-83
- C1 -
1AFH
-
NLTP_MAIZE
A:
[9-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
I
A
P
C
I
S
-------
Y
----
A
--
R
G
Q
--
G
--
S
G
P
-----
S
--
A
G
--
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
------
C
N
C
--
L
K
N
A
-
A
-------------
A
G
V
SG------
L
-----
N
A
------
G
N
A
-
A
S
I
P
S
K
C
G
---------
V
S
I
P
-----------------------------------------------------------------------------------
7
HHSearch
63.12
31%
-78
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[9-79]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
S
L
A
P
C
I
P
-------
Y
----
V
--
R
G
G
--
G
--
A
-
V
-----
P
--
P
A
--
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
------
C
N
C
--
L
K
Q
L
-
S
-------------
A
S
V
PG------
V
-----
N
P
------
N
N
A
-
A
A
L
P
G
K
C
G
---------
V
S
I
P
-----------------------------------------------------------------------------------
23
Fugue
58.55
16%
-90
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
K
--
N
L
G
E
R
S
Q
V
S
-------
P
----
R
--
M
R
E
--
E
--
D
-
H
-----
K
--
Q
L
--
C
C
M
Q
L
K
N
L----------
D
-----
E
-
K
------
C
M
C
P
A
I
M
M
M
-
L
------------
N
E
P
M
--------
W
-----
I
R
MR
D
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
---------
L
M
S
Q
-------
P
C
QM------------------------------------------------------------------------
11
HHSearch
58.30
27%
-91
- C1 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
-------
I
----
L
GG
S
L
G
--
T
----------
V
--
D
D
--
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
------
C
L
C
I
Q
L
R
A
---------------
L
G
I
---------
L
-----
N
L
------
N
R
N
L
Q
L
I
L
N
S
C
G
---------
R
S
Y
P
-------
S
---------------------------------------------------------------------------
4
HHSearch
52.05
28%
-56
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
L
V
R
P
C
L
S
-------
Y
----
V
--
Q
G
G
--
P
--
G
-
P
-----
S
--
G
Q
--
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
------
C
N
C
L
K
G
I
A
R
-
G
------------
I
H
-
N
--------
L
-----
N
E
------
D
N
A
-
R
S
I
P
P
K
C
G
---------
V
N
L
P
-----------------------------------------------------------------------------------
20
Fugue
51.82
11%
-90
- C1 -
1VD2
-
KPCI_HUMAN
A:
[11-99]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
L
--
G
S
Q
V
R
V
K
A
Y
Y
RG
D
I
M
I
T
----
H
--
F
E
P
--
S
--
I
-
S
-----
F
--
E
G
--
L
C
N
E
V
R
D
-----------
M
-----
C
-
S
FDN
E
Q
L
F
T
M
K
W
I
D
E
E
-
G
------------
D
P
C
T
--------
V
-----
S
S
------
Q
L
E
-
L
E
E
A
F
R
L
Y
E
L
N
KDSEL
L
I
H
V
F
-------
P
C
--------------------------------------------------------------------------
29
SP3
48.68
8%
-80
- C1 -
1U78
-
TC3A_CAEEL
A:
[2-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PRGS
A
L
S
--
D
T
E
R
A
Q
-
L
D
-------
V
----
M
--
K
L
L
--
N
--
V
-
S
-----
L
--
H
E
--
M
S
R
K
I
S
R
-----------
S
-----
R
-
H
------
C
I
R
V
Y
L
K
D
P
V
S
------------
Y
G
T
S
KRAPRRKA
L
-----
S
V
------
R
D
E
-
R
N
V
I
R
A
A
S
---------
N
S
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G--------------------------------------------------
28
SP3
44.14
10%
-101
- C1 -
1KNG
-
CYCY_BRADU
A:
[50-193]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEGL
Q
A
D
--
N
V
Q
V
P
G
L
D
P
-------
A
----
A
--
F
K
G
-----
K
-
V
S
L
V
N
V
W
--
A
S
--
W
C
V
P
C
H
D
-----------
E
-----
A
-
P
------
L
L
T
E
L
G
K
D
K
-
R
------------
F
Q
L
V
--------
G
I
N
Y
KD
A
A
------
D
N
A
-
R
R
F
L
G
R
Y
G
---------
N
P
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L--------------------
18
Fugue
43.94
18%
-39
- C1 -
2RP4
-
?
A:
[315-385]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
S
--
A
A
E
W
N
V
S
R
T
-------
P
DGD
Y
R
--
L
A
I
--
T
--
C
-
P
-----
N
--
K
E
W
L
L
Q
S
I
E
G
M
-----------
I
-----
K
-
E
------
A
A
A
E
V
L
R
N
P
-
N
------------
Q
E
N
L
--------
R
-----
R
H
------
A
N
K
-
L
L
S
L
K
K
R
A
---------
Y
E
L
P
-----------------------------------------------------------------------------------
33
SP3
43.37
19%
-79
- C1 -
3FRU
2
FCGRN_RAT
A:
[1-178]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AEP
R
L
P
L
M
Y
H
L
A
A
V
SDLSTGLPS
F
W
A
T
G
W
LGAQQY
L
T
Y
N
N
L
--
R
Q
E
A
D
P
C
G
A
-------
W
----
I
--
W
E
N
--
Q
--
V
-
S
-----
W
Y
W
E
K
--
E
T
T
D
L
K
S
-----------
K
-----
E
-
Q
------
L
F
L
E
A
I
R
---
T
------------
L
E
N
Q
--------
I
-----
N
G
------
T
F
T
-
L
Q
G
L
L
G
C
E
---------
L
A
-
P
-------
D
N
S
S
L
P
T
A
V
F
A
L
NGEEFMRFNPRTG
N
W
S
G
E
W
P
E
T
D
I
V
G
N
L
W
M
KQ
P
E
A
A
R
K
E
S
E
F
L
LT
S
C
P
E
R
L
L
G
H
L
E
RG
R
Q
N
L
E
W
21
Fugue
41.96
9%
-68
- C1 -
3NNF
7
?
A:
[25-342]
MN
R
E
Q
V
E
Q
L
K
Q
E
Y
E
E
KG
Y
C
Q
I
K
KIFD
F
S
A
I
K
T
I
Q
K
T
L
D
Q
A
K
Q
E
S
QISK
E
K
V
T
L
K
L
GGIDDIDTNDHAYDLVK
Y
D
F
V
S
SFIQEK
L
A
L
L
N
Y
I
T
G
K
N
L
M
I
M
H
N
A
L
F
S
V
E
P
NHKGLPWHVGVGSFSFTKTE
D
F
G
A
S
I
W
I
P
L
D
K
I
T
KEHRG
G
M
Q
Y
V
S
TKIFPG
Q
F
Y
Y
S
V
F
D
L
H
L
K
N
N
I
K
WDESQGD
L
N
E
Y
V
A
N
ANTIYNKIT
E
D
V
I
D
Y
T
I
KDG
Y
E
E
D
E
Y
N
--
L
G
D
A
F
F
F
N
K
-------
Y
----
V
--
L
H
Q
--
S
--
V
-
P
-----
L
--
K
P
----
G
L
H
K
L
-----------
R
-----
R
-
A
------
F
V
I
R
L
V
D
Y
D
-
T
------------
R
V
D
-----------------------
E
E
R
-
L
G
L
F
S
K
Y
S
---------
Q
L
H
S
-------
R
Y
Y
K
T
L
P
R
Y
N
KDS
V
L
V
M
V
S
R
A
V
Q
K
GLKSPYLRDI
P
H
V
Q
Q
T
LAARMAA-----------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
QCNAG
S
L
A
V
CTSPIISGTPP
S
K
T
C
C
N
N
L
K
SQR
G
C
F
C
K
FARNP
A
Y
S
S
YINSRNAGK
T
L
T
SCGIAVPKC
40
94.24
100%
-130
- C- -
M040
-
A:
[1-89]
Q
C
N
A
G
S
L
A
V
C
T
S
P
I
I
S
G
T
P
P
S
K
T
C
C
N
N
L
K
S
Q
R
G
C
F
C
K
F
A
R
N
P
A
Y
S
S
Y
I
N
S
R
N
A
G
K
T
L
T
S
C
G
I
A
V
P
K
C
42
91.84
100%
-115
- C- -
M042
-
A:
[1-108]
Q
C
N
A
G
S
L
A
V
C
T
S
P
I
I
S
G
T
P
P
S
K
T
C
C
N
N
L
K
S
Q
R
G
C
F
C
K
F
A
R
N
P
A
Y
S
S
Y
I
N
S
R
N
A
G
K
T
L
T
S
C
G
I
A
V
P
K
C